Information for 23-TCTGCCACTAGA (Motif 23)


Reverse Opposite:

p-value:1e-6
log p-value:-1.567e+01
Information Content per bp:1.952
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif40.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets178.9 +/- 124.4bp
Average Position of motif in Background205.6 +/- 114.0bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)1.96
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

tin/MA0247.2/Jaspar

Match Rank:1
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TCTGCCACTAGA--
----CCACTTGANA

ceh-22/MA0264.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCTGCCACTAGA--
---ACCACTTGAAA

MA0264.1_ceh-22/Jaspar

Match Rank:3
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TCTGCCACTAGA--
---ACCACTTGAAA

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TCTGCCACTAGA
TGTCTGDCACCT--

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCTGCCACTAGA----
TAAGCCACTTGAAATT

tin/dmmpmm(Noyes_hd)/fly

Match Rank:6
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:TCTGCCACTAGA--
----CCACTTGAGN

tin/dmmpmm(Pollard)/fly

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCTGCCACTAGA--
--AGCCACTTGAGA

vnd/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:TCTGCCACTAGA---
-NNNCCACTTNACAN

RPN4/RPN4_H2O2Lo/[](Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCTGCCACTAGA
TTTGCCACC---

BHLH112/MA0961.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TCTGCCACTAGA
---GCCACTTGC