Information for 16-ATGCTGCAGA (Motif 20)


Reverse Opposite:

p-value:1e-10
log p-value:-2.425e+01
Information Content per bp:1.823
Number of Target Sequences with motif442.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif1126.7
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets191.7 +/- 123.4bp
Average Position of motif in Background221.8 +/- 166.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHD1/MA0355.1/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ATGCTGCAGA-
-ACCTGCAGCA

SWI5/Literature(Harbison)/Yeast

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGCTGCAGA
-GGCTGA---

SOK2/MA0385.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATGCTGCAGA-
NNCCTGCAGGT

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ATGCTGCAGA
TNCCTGCA--

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-ATGCTGCAGA
NATGTTGCAA-

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:ATGCTGCAGA
-NGCTN----

SWI5(MacIsaac)/Yeast

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:ATGCTGCAGA
-TGCTGGTT-

ACE2/MA0267.1/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGCTGCAGA
-TGCTGGT--

SeqBias: GCW-triplet

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ATGCTGCAGA---
-AGCAGCAGCAGC

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---ATGCTGCAGA
AATTTGCTGAC--