Information for 4-CWCTGCTGCC (Motif 2)


Reverse Opposite:

p-value:1e-214
log p-value:-4.935e+02
Information Content per bp:1.574
Number of Target Sequences with motif3680.0
Percentage of Target Sequences with motif16.15%
Number of Background Sequences with motif7362.4
Percentage of Background Sequences with motif8.70%
Average Position of motif in Targets188.6 +/- 118.5bp
Average Position of motif in Background221.2 +/- 158.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RAV1(1)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CWCTGCTGCC-
NTTCTGTTGCNN

RAV1/MA0582.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CWCTGCTGCC-
NTTCTGTTGCNN

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.64
Offset:5
Orientation:forward strand
Alignment:CWCTGCTGCC----
-----CTGCCCGCA

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CWCTGCTGCC---
---TGCTGACTCA

UGA3/MA0410.1/Jaspar

Match Rank:5
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CWCTGCTGCC-
---TCCCGCCG

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:CWCTGCTGCC
---CGCCGCC

NRL/MA0842.1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CWCTGCTGCC
AATTTGCTGAC

PB0041.1_Mafb_1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CWCTGCTGCC-----
AAATTTGCTGACTTAGA

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CWCTGCTGCC-
AAAATGCTGACT

SUM1(MacIsaac)/Yeast

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CWCTGCTGCC----
ATTTACTGACGCNT