Information for 1-SHAGRKGGCRCT (Motif 1)


Reverse Opposite:

p-value:1e-1792
log p-value:-4.128e+03
Information Content per bp:1.590
Number of Target Sequences with motif12722.0
Percentage of Target Sequences with motif55.82%
Number of Background Sequences with motif19976.9
Percentage of Background Sequences with motif23.61%
Average Position of motif in Targets183.4 +/- 95.5bp
Average Position of motif in Background211.3 +/- 134.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0531.1/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---SHAGRKGGCRCT
CCGCTAGATGGCGCC

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.81
Offset:-4
Orientation:reverse strand
Alignment:----SHAGRKGGCRCT----
GCCASCAGGGGGCGCYVNNG

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.79
Offset:-6
Orientation:forward strand
Alignment:------SHAGRKGGCRCT-
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.79
Offset:-6
Orientation:reverse strand
Alignment:------SHAGRKGGCRCT--
TGGCCACCAGGTGGCACTNT

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--SHAGRKGGCRCT---
NNNAAGGGGGCGGGNNN

INSM1/MA0155.1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--SHAGRKGGCRCT
TGTCAGGGGGCG--

RPN4/MA0373.1/Jaspar

Match Rank:7
Score:0.70
Offset:3
Orientation:forward strand
Alignment:SHAGRKGGCRCT
---GGTGGCG--

MSN4/MA0342.1/Jaspar

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:SHAGRKGGCRCT
--AGGGG-----

MSN4/Literature(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:SHAGRKGGCRCT
-AAGGGGN----

MSN4(MacIsaac)/Yeast

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:SHAGRKGGCRCT
-AAGGGGG----