Information for 10-CAGTGACCCCTC (Motif 9)


Reverse Opposite:

p-value:1e-22
log p-value:-5.200e+01
Information Content per bp:1.531
Number of Target Sequences with motif220.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif257.2
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets216.1 +/- 138.6bp
Average Position of motif in Background231.1 +/- 149.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGACCCCTC---
NNNNTTGACCCCTNNNN

RGM1/MA0366.1/Jaspar

Match Rank:2
Score:0.72
Offset:6
Orientation:reverse strand
Alignment:CAGTGACCCCTC
------CCCCT-

usp/MA0016.1/Jaspar

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CAGTGACCCCTC
CCGTGACCCC--

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:CAGTGACCCCTC
---TGACACCT-

MSN4/MA0342.1/Jaspar

Match Rank:5
Score:0.72
Offset:6
Orientation:reverse strand
Alignment:CAGTGACCCCTC
------CCCCT-

PB0030.1_Hnf4a_1/Jaspar

Match Rank:6
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGACCCCTC---
NNANTTGACCCCTNNNN

MSN4/Literature(Harbison)/Yeast

Match Rank:7
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:CAGTGACCCCTC
-----NCCCCTG

usp/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CAGTGACCCCTC
-CGTGACCCC--

TBX5/MA0807.1/Jaspar

Match Rank:9
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CAGTGACCCCTC
---TCACACCT-

GIS1/MA0306.1/Jaspar

Match Rank:10
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CAGTGACCCCTC--
-----ACCCCTAAA