Information for 4-TCMCTCTS (Motif 7)


Reverse Opposite:

p-value:1e-28
log p-value:-6.571e+01
Information Content per bp:1.580
Number of Target Sequences with motif7505.0
Percentage of Target Sequences with motif29.43%
Number of Background Sequences with motif19601.5
Percentage of Background Sequences with motif25.82%
Average Position of motif in Targets211.5 +/- 141.0bp
Average Position of motif in Background222.2 +/- 157.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:TCMCTCTS-
-CTCTCTCY

Trl/dmmpmm(Pollard)/fly

Match Rank:2
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:TCMCTCTS--
TTGCTCTCTC

Trl/MA0205.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TCMCTCTS--
TTGCTCTCTC

SPIB/MA0081.1/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:TCMCTCTS
TTCCTCT-

z/dmmpmm(Down)/fly

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TCMCTCTS
-CACTCA-

PB0114.1_Egr1_2/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCMCTCTS----
NNAGTCCCACTCNNNN

RME1/MA0370.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCMCTCTS--
TTCCTTTGGA

GAGA-repeat/Arabidopsis-Promoters/Homer

Match Rank:8
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TCMCTCTS---
-CTCTCTCTCY

z/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCMCTCTS
-CACTCA-

SeqBias: GA-repeat

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:TCMCTCTS--
TCTCTCTCTC