Information for 5-GCTCACTGCTGC (Motif 4)


Reverse Opposite:

p-value:1e-101
log p-value:-2.334e+02
Information Content per bp:1.862
Number of Target Sequences with motif407.0
Percentage of Target Sequences with motif1.60%
Number of Background Sequences with motif208.6
Percentage of Background Sequences with motif0.27%
Average Position of motif in Targets215.2 +/- 137.3bp
Average Position of motif in Background209.6 +/- 138.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:GCTCACTGCTGC-
-CCCCCTGCTGTG

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GCTCACTGCTGC-
---CGCAGCTGCG

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GCTCACTGCTGC-
-----CAGCTGNT

Trl/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GCTCACTGCTGC
TTGCTCTCTC----

Trl/MA0205.1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GCTCACTGCTGC
TTGCTCTCTC----

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCTCACTGCTGC
--NNACAGCTGC

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCTCACTGCTGC---
---AGCAGCTGCTNN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:GCTCACTGCTGC--
----NCAGCTGCTG

Tcf12/MA0521.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCTCACTGCTGC--
---AACAGCTGCAG

Myog/MA0500.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCTCACTGCTGC--
---GACAGCTGCAG