Information for 25-CCCTTCTCAGCA (Motif 30)


Reverse Opposite:

p-value:1e-6
log p-value:-1.464e+01
Information Content per bp:1.961
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets178.7 +/- 108.7bp
Average Position of motif in Background158.9 +/- 72.6bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAFK/MA0496.1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCCTTCTCAGCA----
-CTGAGTCAGCAATTT

MAFF/MA0495.1/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CCCTTCTCAGCA------
GCTGAGTCAGCAATTTTT

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:CCCTTCTCAGCA----
-----GTCAGCANNTN

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCTTCTCAGCA-----
--HWWGTCAGCAWWTTT

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CCCTTCTCAGCA-----
--CCACACAGCAGGAGA

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CCCTTCTCAGCA--
--TTTCTNAGAAAN

Unknown5/Drosophila-Promoters/Homer

Match Rank:7
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCCTTCTCAGCA
-BSTTATCAGC-

PB0022.1_Gata5_1/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCCTTCTCAGCA--
NTNTTCTTATCAGTNTN

SWI5/Literature(Harbison)/Yeast

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CCCTTCTCAGCA
------CCAGCA

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCCTTCTCAGCA--
----DCTCAGCAGG