Information for 20-TATAGCAA (Motif 26)


Reverse Opposite:

p-value:1e-8
log p-value:-1.963e+01
Information Content per bp:1.788
Number of Target Sequences with motif1630.0
Percentage of Target Sequences with motif6.39%
Number of Background Sequences with motif4102.9
Percentage of Background Sequences with motif5.41%
Average Position of motif in Targets202.9 +/- 141.3bp
Average Position of motif in Background231.1 +/- 167.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RFX1/MA0365.1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:TATAGCAA--
--TAGCAACC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TATAGCAA
NATGTTGCAA

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---TATAGCAA----
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TATAGCAA----
TACCATAGCAACGGT

br-Z2/dmmpmm(SeSiMCMC)/fly

Match Rank:5
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TATAGCAA
--TAGTAA

PB0054.1_Rfx3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------TATAGCAA--------
TGTGACCCTTAGCAACCGATTAA

GTS1(MacIsaac)/Yeast

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TATAGCAA
--TACCAA

MAC1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TATAGCAA-
--GAGCAAA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TATAGCAA---
SCCTAGCAACAG

PB0119.1_Foxa2_2/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TATAGCAA----
AAAAATAACAAACGG