Information for 12-SGCGCCTC (Motif 20)


Reverse Opposite:

p-value:1e-13
log p-value:-3.085e+01
Information Content per bp:1.536
Number of Target Sequences with motif7067.0
Percentage of Target Sequences with motif27.71%
Number of Background Sequences with motif19224.5
Percentage of Background Sequences with motif25.33%
Average Position of motif in Targets230.0 +/- 147.0bp
Average Position of motif in Background225.8 +/- 142.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SWI6(MacIsaac)/Yeast

Match Rank:1
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:SGCGCCTC
--CGCGTC

RPN4/MA0373.1/Jaspar

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:SGCGCCTC-
--CGCCACC

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--SGCGCCTC
AGCGCGCC--

brk/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SGCGCCTC
GGCGCCAG

brk/MA0213.1/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:SGCGCCTC
GGCGCCAG

MBP1(MacIsaac)/Yeast

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:SGCGCCTC
-ACGCGTC

RAP2-10/MA0980.1/Jaspar

Match Rank:7
Score:0.68
Offset:1
Orientation:forward strand
Alignment:SGCGCCTC-
-GCGCCGCC

brk/dmmpmm(Papatsenko)/fly

Match Rank:8
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:SGCGCCTC
GGCGCCAG

brk/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-SGCGCCTC
CGGCGCC--

Mad/MA0535.1/Jaspar

Match Rank:10
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------SGCGCCTC
CNGCGNCGGCGCCNG