Information for 3-CDCCMCCTRGHG (Motif 2)


Reverse Opposite:

p-value:1e-209
log p-value:-4.815e+02
Information Content per bp:1.771
Number of Target Sequences with motif7949.0
Percentage of Target Sequences with motif31.17%
Number of Background Sequences with motif16277.5
Percentage of Background Sequences with motif21.44%
Average Position of motif in Targets201.4 +/- 110.7bp
Average Position of motif in Background201.2 +/- 120.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.83
Offset:-6
Orientation:forward strand
Alignment:------CDCCMCCTRGHG--
CNNBRGCGCCCCCTGSTGGC

CTCF/MA0531.1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--CDCCMCCTRGHG-
GGCGCCATCTAGCGG

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---CDCCMCCTRGHG----
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.75
Offset:-4
Orientation:forward strand
Alignment:----CDCCMCCTRGHG----
ANAGTGCCACCTGGTGGCCA

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----CDCCMCCTRGHG
GGTCCCGCCCCCTTCTC

btd/MA0443.1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CDCCMCCTRGHG
TCCGCCCCCT----

RPN4/MA0373.1/Jaspar

Match Rank:7
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CDCCMCCTRGHG
CGCCACC-----

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CDCCMCCTRGHG---
GACCCCCCGCTGTGC

AtMYB15(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CDCCMCCTRGHG---
--CCACCTACCGTCG

MYB15/MA0574.1/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CDCCMCCTRGHG---
--CCACCTACCGTCG