Information for 19-ACGCGTGCGGCT (Motif 19)


Reverse Opposite:

p-value:1e-13
log p-value:-3.140e+01
Information Content per bp:1.694
Number of Target Sequences with motif239.0
Percentage of Target Sequences with motif0.94%
Number of Background Sequences with motif373.2
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets238.7 +/- 145.6bp
Average Position of motif in Background228.9 +/- 135.3bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hes1/MA1099.1/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGTGCGGCT
NNCGCGTGNN---

STP1/MA0394.1/Jaspar

Match Rank:2
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ACGCGTGCGGCT-
-----TGCGGCGC

STP1(MacIsaac)/Yeast

Match Rank:3
Score:0.68
Offset:5
Orientation:forward strand
Alignment:ACGCGTGCGGCT-
-----TGCGGCGC

h/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACGCGTGCGGCT
NTGGCGCGTGCCNN-

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:ACGCGTGCGGCT
-TGCGTG-----

MBP1/MBP1_H2O2Hi/[](Harbison)/Yeast

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-ACGCGTGCGGCT
GACGCGT------

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACGCGTGCGGCT
-NGCCTGAGGCN

MBP1::SWI6/MA0330.1/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGTGCGGCT
AACGCGT------

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ACGCGTGCGGCT
-TGCCTGAGGCN

MBP1(MacIsaac)/Yeast

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGTGCGGCT
GACGCGT------