Information for 12-GGACAACAGT (Motif 12)


Reverse Opposite:

p-value:1e-19
log p-value:-4.377e+01
Information Content per bp:1.702
Number of Target Sequences with motif1094.0
Percentage of Target Sequences with motif4.29%
Number of Background Sequences with motif2337.0
Percentage of Background Sequences with motif3.08%
Average Position of motif in Targets211.6 +/- 139.2bp
Average Position of motif in Background217.0 +/- 155.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GGACAACAGT
RAACAATGGN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GGACAACAGT
RNAACAATGG-

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GGACAACAGT--
CTCACACAATGGCGC

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGACAACAGT
-RACAAWGG-

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGACAACAGT--
TCACGGAACAATAGGTG

PB0047.1_Myf6_1/Jaspar

Match Rank:6
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGACAACAGT-----
CNGACACCTGTTCNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GGACAACAGT
GAACAATGGN

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGACAACAGT
AAAACAATGG-

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGACAACAGT
AAAACAAAGG-

SOX9/MA0077.1/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGACAACAGT
GAACAATGG-