Information for 11-CGCTCCGCGG (Motif 11)


Reverse Opposite:

p-value:1e-20
log p-value:-4.697e+01
Information Content per bp:1.645
Number of Target Sequences with motif2542.0
Percentage of Target Sequences with motif9.97%
Number of Background Sequences with motif6105.5
Percentage of Background Sequences with motif8.04%
Average Position of motif in Targets237.3 +/- 151.6bp
Average Position of motif in Background226.5 +/- 135.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IME1/MA0320.1/Jaspar

Match Rank:1
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CGCTCCGCGG
--CTCGGCGG

PDR1/MA0352.1/Jaspar

Match Rank:2
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CGCTCCGCGG-
---TCCGCGGA

IME1(MacIsaac)/Yeast

Match Rank:3
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CGCTCCGCGG
--CTCGGCGG

PDR3/Literature(Harbison)/Yeast

Match Rank:4
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CGCTCCGCGG-
---TCCGCGGA

PDR3/MA0353.1/Jaspar

Match Rank:5
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CGCTCCGCGG-
---TCCGCGGA

PDR3(MacIsaac)/Yeast

Match Rank:6
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CGCTCCGCGG-
---TCCGCGGA

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.76
Offset:1
Orientation:forward strand
Alignment:CGCTCCGCGG
-GCTCCG---

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CGCTCCGCGG-
NNGCNCTGCGCGGC

SUT1(MacIsaac)/Yeast

Match Rank:9
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CGCTCCGCGG
--CCCCGCG-

CDC5(MYB)/Arabidopsis thaliana/AthaMap

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CGCTCCGCGG-
GGCTCAGCGCG