| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-1498 | -3.450e+03 | 0.0000 | 4753.0 | 11.34% | 531.3 | 0.73% | motif file (matrix) |
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| 2 |  | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-525 | -1.209e+03 | 0.0000 | 17984.0 | 42.90% | 20686.7 | 28.57% | motif file (matrix) |
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| 3 |  | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-497 | -1.145e+03 | 0.0000 | 19740.0 | 47.09% | 23756.2 | 32.80% | motif file (matrix) |
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| 4 |  | RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer | 1e-24 | -5.698e+01 | 0.0000 | 15860.0 | 37.84% | 25185.0 | 34.78% | motif file (matrix) |
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| 5 |  | SeqBias: G/A bias | 1e-3 | -8.678e+00 | 0.0132 | 41918.0 | 100.00% | 72398.7 | 99.97% | motif file (matrix) |
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| 6 |  | ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer | 1e-3 | -8.096e+00 | 0.0197 | 1126.0 | 2.69% | 1706.0 | 2.36% | motif file (matrix) |
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