Information for 7-RTTCCCAGCACC (Motif 7)


Reverse Opposite:

p-value:1e-190
log p-value:-4.385e+02
Information Content per bp:1.743
Number of Target Sequences with motif2497.0
Percentage of Target Sequences with motif5.96%
Number of Background Sequences with motif1772.5
Percentage of Background Sequences with motif2.45%
Average Position of motif in Targets171.6 +/- 95.4bp
Average Position of motif in Background222.8 +/- 174.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT3/MA0144.2/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:RTTCCCAGCACC
TTTCCCAGAAN-

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-RTTCCCAGCACC
ATTTCCAAGAA--

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RTTCCCAGCACC
HTTTCCCASG---

STAT1/MA0137.3/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:RTTCCCAGCACC
TTTCCTGGAAA-

Stat4/MA0518.1/Jaspar

Match Rank:5
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---RTTCCCAGCACC
NNNTTTCCTGGAAA-

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-RTTCCCAGCACC--
ATTTCCCAGVAKSCY

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-RTTCCCAGCACC
NTTTCTNAGAAA-

SWI5/MA0402.1/Jaspar

Match Rank:8
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:RTTCCCAGCACC
--AACCAGCA--

ACE2/MA0267.1/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:RTTCCCAGCACC
---ACCAGCA--

SWI5/Literature(Harbison)/Yeast

Match Rank:10
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:RTTCCCAGCACC
----CCAGCA--