Information for 7-AGTACCCAYA (Motif 4)


Reverse Opposite:

p-value:1e-233
log p-value:-5.366e+02
Information Content per bp:1.631
Number of Target Sequences with motif4174.0
Percentage of Target Sequences with motif9.96%
Number of Background Sequences with motif3506.7
Percentage of Background Sequences with motif4.84%
Average Position of motif in Targets175.2 +/- 103.7bp
Average Position of motif in Background215.0 +/- 168.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RAP1(MacIsaac)/Yeast

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGTACCCAYA---
-ACACCCATACAC

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:2
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGTACCCAYA
-GCACCC---

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AGTACCCAYA
GGACCACCCACG

GCM1/MA0646.1/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGTACCCAYA--
-GTACCCGCATN

RAP1/MA0359.1/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:AGTACCCAYA--
--CACCCATACA

Su(H)/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:AGTACCCAYA
-GTTCCCACG

PB0133.1_Hic1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTACCCAYA---
GGGTGTGCCCAAAAGG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:8
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AGTACCCAYA
AAGCACTTAA-

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTACCCAYA--
--CRCCCACGCA

Su(H)/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGTACCCAYA
--CTCCCAC-