Information for 25-GGAGTAGTAGTR (Motif 22)


Reverse Opposite:

p-value:1e-8
log p-value:-1.905e+01
Information Content per bp:1.783
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets246.6 +/- 214.8bp
Average Position of motif in Background185.6 +/- 165.2bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-GGAGTAGTAGTR
GGGAATTGTAGT-

SMP1/Literature(Harbison)/Yeast

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGAGTAGTAGTR
CTAAAAATAGTAGT-

SMP1(MacIsaac)/Yeast

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GGAGTAGTAGTR
CTAAAAATAGTAGT-

schlank/MA0193.1/Jaspar

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:GGAGTAGTAGTR
---TTGGTAG--

br(var.2)/MA0011.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGAGTAGTAGTR
-AAATAGTA---

Aef1/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGAGTAGTAGTR
--TGTTGTTG--

odd/MA0454.1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGAGTAGTAGTR
AACAGTAGCAG--

br-Z2/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.58
Offset:4
Orientation:forward strand
Alignment:GGAGTAGTAGTR
----TAGTAA--

ARR1/Literature(Harbison)/Yeast

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGAGTAGTAGTR
---TTAGTAA--

YAP3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GGAGTAGTAGTR
---TTAGTAA--