Information for 22-CGCSGSCGSC (Motif 21)


Reverse Opposite:

p-value:1e-17
log p-value:-4.025e+01
Information Content per bp:1.768
Number of Target Sequences with motif2390.0
Percentage of Target Sequences with motif5.70%
Number of Background Sequences with motif3288.3
Percentage of Background Sequences with motif4.54%
Average Position of motif in Targets238.3 +/- 150.4bp
Average Position of motif in Background227.5 +/- 109.9bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.47
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: CG bias

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCSGSCGSC
CCCCCCCCCC

Os05g0497200/MA1034.1/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CGCSGSCGSC
CGCCGCCA--

abi4/MA0123.1/Jaspar

Match Rank:3
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CGCSGSCGSC
CGGTGCCCCC

ERF4/MA0992.1/Jaspar

Match Rank:4
Score:0.73
Offset:2
Orientation:forward strand
Alignment:CGCSGSCGSC
--CCGCCGCC

ERF3/MA1005.1/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CGCSGSCGSC
CGCCGCCA--

RAP2-6/MA1052.1/Jaspar

Match Rank:6
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CGCSGSCGSC
GCGCCGCC---

Mad/MA0535.1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CGCSGSCGSC-
CAGGCGCCGCCGCCG

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:8
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CGCSGSCGSC
CGCCGCC---

CRF4/MA0976.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGCSGSCGSC
GCGCCGCC---

RAP2-10/MA0980.1/Jaspar

Match Rank:10
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CGCSGSCGSC
GCGCCGCC---