Information for 2-GAGGCCAGAAGA (Motif 2)


Reverse Opposite:

p-value:1e-826
log p-value:-1.904e+03
Information Content per bp:1.891
Number of Target Sequences with motif5390.0
Percentage of Target Sequences with motif12.86%
Number of Background Sequences with motif2303.6
Percentage of Background Sequences with motif3.18%
Average Position of motif in Targets164.3 +/- 71.3bp
Average Position of motif in Background192.2 +/- 136.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GAGGCCAGAAGA
-ATGCCAGACN-

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGGCCAGAAGA-
ARGAGGMCAAAATGW

SKN7/MA0381.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGGCCAGAAGA
--GGCCAT----

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:GAGGCCAGAAGA-----
AAGGCCAGATGGTCCGG

Eip74EF/MA0026.1/Jaspar

Match Rank:5
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAGGCCAGAAGA
----CCGGAAG-

Tal1

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GAGGCCAGAAGA
-----CAGATG-

RARA/MA0729.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGGCCAGAAGA------
GAGGTCAAAAGGTCAATG

ELK4/MA0076.2/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGGCCAGAAGA--
---NCCGGAAGTGG

POL008.1_DCE_S_I/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GAGGCCAGAAGA
------NGAAGC

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGGCCAGAAGA
CAAAGGTCAAGGG-