Information for 22-ADGTGCTCTTAA (Motif 18)


Reverse Opposite:

p-value:1e-54
log p-value:-1.266e+02
Information Content per bp:1.587
Number of Target Sequences with motif637.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif417.9
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets170.7 +/- 104.4bp
Average Position of motif in Background200.1 +/- 151.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

bap/MA0211.1/Jaspar

Match Rank:1
Score:0.75
Offset:5
Orientation:reverse strand
Alignment:ADGTGCTCTTAA
-----CACTTAA

bap/dmmpmm(Noyes_hd)/fly

Match Rank:2
Score:0.74
Offset:4
Orientation:reverse strand
Alignment:ADGTGCTCTTAA--
----NCACTTAANN

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:forward strand
Alignment:ADGTGCTCTTAA
----GCACTTAA

NKX3-2/MA0122.2/Jaspar

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:ADGTGCTCTTAA
---ACCACTTAA

PH0004.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-ADGTGCTCTTAA----
CATAACCACTTAACAAC

tin/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.66
Offset:5
Orientation:forward strand
Alignment:ADGTGCTCTTAA
-----CACTTAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.66
Offset:2
Orientation:forward strand
Alignment:ADGTGCTCTTAA
--AASCACTCAA

PHO2(MacIsaac)/Yeast

Match Rank:8
Score:0.66
Offset:7
Orientation:reverse strand
Alignment:ADGTGCTCTTAA-
-------CTTAAT

Nkx3-1/MA0124.2/Jaspar

Match Rank:9
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ADGTGCTCTTAA
---ACCACTTAA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ADGTGCTCTTAA-
---RSCACTYRAG