Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 34255)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 481992)	% of Background Sequences with Motif
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-404	-9.325e+02	0.0000	16223.0	47.36%	171541.1	35.59%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-387	-8.922e+02	0.0000	14362.0	41.92%	148129.9	30.73%
SeqBias: GA-repeat	GAGAGAGAGA	1e-70	-1.620e+02	0.0000	31044.0	90.62%	421591.8	87.46%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-49	-1.129e+02	0.0000	30385.0	88.69%	414104.0	85.91%
SeqBias: CA-repeat	CACACACACA	1e-31	-7.352e+01	0.0000	27903.0	81.45%	379787.0	78.79%
SeqBias: CG bias	SSSSSSSSSS	1e-30	-7.017e+01	0.0000	33237.0	97.02%	461748.8	95.79%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-26	-6.078e+01	0.0000	23243.0	67.85%	313357.9	65.01%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-25	-5.891e+01	0.0000	21239.0	62.00%	284928.1	59.11%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-25	-5.878e+01	0.0000	25640.0	74.84%	348191.6	72.23%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-23	-5.428e+01	0.0000	18526.0	54.08%	247070.7	51.25%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-23	-5.330e+01	0.0000	21187.0	61.85%	284906.0	59.10%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-21	-4.981e+01	0.0000	5822.0	16.99%	72444.7	15.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-21	-4.911e+01	0.0000	15727.0	45.91%	208461.1	43.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-21	-4.902e+01	0.0000	12091.0	35.29%	157932.7	32.76%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-20	-4.758e+01	0.0000	19773.0	57.72%	265611.9	55.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-16	-3.861e+01	0.0000	18143.0	52.96%	243925.2	50.60%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-16	-3.789e+01	0.0000	6921.0	20.20%	88551.1	18.37%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-16	-3.766e+01	0.0000	16579.0	48.39%	222085.9	46.07%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-16	-3.715e+01	0.0000	18108.0	52.86%	243665.5	50.55%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-15	-3.635e+01	0.0000	22136.0	64.62%	300857.9	62.41%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-13	-3.158e+01	0.0000	7861.0	22.95%	102184.8	21.20%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-13	-3.034e+01	0.0000	14184.0	41.40%	189799.0	39.37%
SeqBias: A/T bias	WWWWWWWWWW	1e-12	-2.987e+01	0.0000	29679.0	86.63%	410681.6	85.20%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-12	-2.970e+01	0.0000	13945.0	40.71%	186576.2	38.71%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-12	-2.773e+01	0.0000	9638.0	28.13%	127175.5	26.38%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-12	-2.765e+01	0.0000	11636.0	33.97%	154821.9	32.12%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-11	-2.674e+01	0.0000	12583.0	36.73%	168135.2	34.88%
Tal1	CATCTG	1e-11	-2.664e+01	0.0000	9232.0	26.95%	121760.9	25.26%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-11	-2.660e+01	0.0000	11170.0	32.61%	148545.1	30.82%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-10	-2.488e+01	0.0000	34009.0	99.27%	476791.8	98.91%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-10	-2.404e+01	0.0000	11077.0	32.33%	147719.8	30.64%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-10	-2.358e+01	0.0000	13669.0	39.90%	183865.8	38.14%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-9	-2.118e+01	0.0000	9477.0	27.66%	126105.8	26.16%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-8	-2.056e+01	0.0000	7773.0	22.69%	102723.8	21.31%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-8	-2.016e+01	0.0000	13326.0	38.90%	179782.1	37.30%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-8	-1.938e+01	0.0000	8225.0	24.01%	109163.3	22.65%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-8	-1.930e+01	0.0000	17949.0	52.39%	244791.1	50.78%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-8	-1.923e+01	0.0000	13456.0	39.28%	181799.7	37.71%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-8	-1.878e+01	0.0000	11078.0	32.34%	148776.3	30.86%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-8	-1.864e+01	0.0000	11009.0	32.14%	147847.5	30.67%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-7	-1.836e+01	0.0000	12536.0	36.59%	169158.7	35.09%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-7	-1.812e+01	0.0000	9118.0	26.62%	121741.8	25.26%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-7	-1.808e+01	0.0000	11042.0	32.23%	148426.9	30.79%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-7	-1.805e+01	0.0000	9532.0	27.82%	127485.5	26.45%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-7	-1.795e+01	0.0000	3039.0	8.87%	38640.2	8.02%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-7	-1.759e+01	0.0000	17211.0	50.24%	234803.4	48.71%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.714e+01	0.0000	12042.0	35.15%	162548.7	33.72%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-7	-1.708e+01	0.0000	7467.0	21.80%	99160.2	20.57%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-6	-1.560e+01	0.0000	8808.0	25.71%	117984.1	24.48%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-6	-1.482e+01	0.0000	16322.0	47.64%	222998.2	46.26%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-6	-1.459e+01	0.0000	11841.0	34.56%	160353.7	33.27%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-6	-1.417e+01	0.0000	14130.0	41.25%	192435.9	39.92%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-6	-1.414e+01	0.0000	8425.0	24.59%	113008.0	23.44%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-6	-1.407e+01	0.0000	7860.0	22.94%	105209.7	21.83%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-6	-1.401e+01	0.0000	3068.0	8.96%	39568.3	8.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.384e+01	0.0000	8630.0	25.19%	115914.7	24.05%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-6	-1.384e+01	0.0000	6030.0	17.60%	80030.7	16.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-5	-1.235e+01	0.0000	7379.0	21.54%	98951.1	20.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-5	-1.215e+01	0.0000	4904.0	14.31%	64907.6	13.47%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-5	-1.206e+01	0.0000	5439.0	15.88%	72270.2	14.99%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-5	-1.194e+01	0.0000	6219.0	18.15%	83032.5	17.23%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-5	-1.179e+01	0.0000	4237.0	12.37%	55843.0	11.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-4	-1.136e+01	0.0001	13507.0	39.43%	184497.3	38.27%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-4	-1.123e+01	0.0001	4872.0	14.22%	64654.7	13.41%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-1.100e+01	0.0001	7355.0	21.47%	98944.0	20.53%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-4	-1.079e+01	0.0001	2685.0	7.84%	34873.2	7.23%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-4	-1.067e+01	0.0001	12606.0	36.80%	172100.5	35.70%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-4	-1.063e+01	0.0001	4620.0	13.49%	61319.7	12.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-4	-1.006e+01	0.0002	11568.0	33.77%	157785.3	32.73%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-1.002e+01	0.0002	14328.0	41.82%	196404.6	40.74%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-4	-9.818e+00	0.0003	10291.0	30.04%	140046.4	29.05%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-9.750e+00	0.0003	13189.0	38.50%	180539.4	37.45%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-4	-9.639e+00	0.0003	6116.0	17.85%	82149.1	17.04%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-4	-9.547e+00	0.0004	5444.0	15.89%	72897.3	15.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-4	-9.537e+00	0.0004	4882.0	14.25%	65158.8	13.52%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-4	-9.424e+00	0.0004	6624.0	19.34%	89227.2	18.51%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-4	-9.387e+00	0.0004	8322.0	24.29%	112778.6	23.40%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-4	-9.343e+00	0.0004	11822.0	34.51%	161554.6	33.51%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-9.289e+00	0.0005	4830.0	14.10%	64499.6	13.38%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-4	-9.228e+00	0.0005	13142.0	38.36%	180050.0	37.35%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-3	-9.197e+00	0.0005	3724.0	10.87%	49330.9	10.23%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-3	-9.192e+00	0.0005	10285.0	30.02%	140152.6	29.07%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-3	-9.096e+00	0.0005	5742.0	16.76%	77119.5	16.00%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-3	-9.075e+00	0.0005	4883.0	14.25%	65278.8	13.54%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-3	-8.981e+00	0.0006	3787.0	11.05%	50238.4	10.42%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-3	-8.924e+00	0.0006	11127.0	32.48%	151982.8	31.53%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-8.628e+00	0.0008	1400.0	4.09%	17846.3	3.70%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-8.591e+00	0.0008	12899.0	37.65%	176862.8	36.69%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-3	-8.533e+00	0.0009	2405.0	7.02%	31448.0	6.52%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-3	-8.524e+00	0.0009	7941.0	23.18%	107736.6	22.35%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-8.492e+00	0.0009	1120.0	3.27%	14117.2	2.93%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-3	-8.321e+00	0.0010	4326.0	12.63%	57787.7	11.99%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-3	-8.236e+00	0.0011	4350.0	12.70%	58137.0	12.06%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-3	-8.208e+00	0.0011	3139.0	9.16%	41522.4	8.61%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-3	-8.161e+00	0.0012	6727.0	19.64%	90996.8	18.88%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-3	-8.069e+00	0.0013	9496.0	27.72%	129511.5	26.87%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-3	-8.067e+00	0.0013	1747.0	5.10%	22600.9	4.69%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-3	-7.938e+00	0.0014	5664.0	16.53%	76341.8	15.84%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-7.771e+00	0.0016	1642.0	4.79%	21226.3	4.40%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-3	-7.719e+00	0.0017	4906.0	14.32%	65927.2	13.68%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-3	-7.717e+00	0.0017	9540.0	27.85%	130240.7	27.02%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.668e+00	0.0018	7647.0	22.32%	103910.7	21.56%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-3	-7.488e+00	0.0021	11148.0	32.54%	152760.9	31.69%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-3	-7.470e+00	0.0021	6831.0	19.94%	92640.7	19.22%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-3	-7.425e+00	0.0022	3299.0	9.63%	43879.9	9.10%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.387e+00	0.0023	6095.0	17.79%	82460.5	17.11%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-3	-7.252e+00	0.0026	3228.0	9.42%	42943.5	8.91%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.148e+00	0.0028	5562.0	16.24%	75149.0	15.59%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.073e+00	0.0030	4922.0	14.37%	66318.7	13.76%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.046e+00	0.0031	8821.0	25.75%	120447.5	24.99%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-3	-6.969e+00	0.0033	4836.0	14.12%	65158.7	13.52%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-2	-6.901e+00	0.0035	5765.0	16.83%	78030.8	16.19%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-2	-6.896e+00	0.0035	6599.0	19.26%	89597.0	18.59%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.712e+00	0.0041	2984.0	8.71%	39715.8	8.24%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-2	-6.636e+00	0.0044	2133.0	6.23%	28087.6	5.83%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-6.624e+00	0.0044	3857.0	11.26%	51740.7	10.73%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-6.557e+00	0.0047	1332.0	3.89%	17222.2	3.57%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.424e+00	0.0053	9923.0	28.97%	136039.2	28.22%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-2	-6.325e+00	0.0058	2764.0	8.07%	36783.5	7.63%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-6.262e+00	0.0062	1674.0	4.89%	21905.7	4.54%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-2	-6.117e+00	0.0071	19727.0	57.58%	273772.9	56.79%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-2	-6.079e+00	0.0073	2526.0	7.37%	33575.0	6.97%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-2	-5.988e+00	0.0079	3145.0	9.18%	42095.6	8.73%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.876e+00	0.0088	6128.0	17.89%	83384.4	17.30%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-5.858e+00	0.0088	5906.0	17.24%	80308.6	16.66%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-2	-5.848e+00	0.0089	6551.0	19.12%	89270.9	18.52%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.763e+00	0.0096	4922.0	14.37%	66694.0	13.84%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-2	-5.662e+00	0.0105	9012.0	26.31%	123615.7	25.64%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.620e+00	0.0109	2626.0	7.67%	35049.9	7.27%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-2	-5.583e+00	0.0112	1347.0	3.93%	17580.6	3.65%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-5.503e+00	0.0120	4594.0	13.41%	62231.7	12.91%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-5.400e+00	0.0132	5531.0	16.15%	75254.1	15.61%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-2	-5.372e+00	0.0135	2628.0	7.67%	35135.9	7.29%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-2	-5.363e+00	0.0135	3271.0	9.55%	43989.2	9.13%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-2	-5.320e+00	0.0140	1055.0	3.08%	13667.4	2.84%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.316e+00	0.0140	1889.0	5.51%	25015.7	5.19%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-5.307e+00	0.0140	5318.0	15.52%	72329.3	15.00%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-2	-5.262e+00	0.0145	3561.0	10.39%	48018.1	9.96%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.260e+00	0.0145	6974.0	20.36%	95363.7	19.78%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-5.201e+00	0.0152	3954.0	11.54%	53466.6	11.09%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-2	-5.149e+00	0.0159	2162.0	6.31%	28789.9	5.97%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-2	-5.137e+00	0.0160	6212.0	18.13%	84806.4	17.59%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-2	-5.109e+00	0.0163	1135.0	3.31%	14783.5	3.07%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-5.108e+00	0.0163	6918.0	20.19%	94640.9	19.63%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-5.084e+00	0.0165	1223.0	3.57%	15981.1	3.32%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.082e+00	0.0165	3067.0	8.95%	41251.1	8.56%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.077e+00	0.0165	4985.0	14.55%	67785.7	14.06%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-4.986e+00	0.0179	5275.0	15.40%	71840.3	14.90%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-2	-4.932e+00	0.0187	1443.0	4.21%	19001.4	3.94%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-2	-4.832e+00	0.0206	3119.0	9.10%	42036.3	8.72%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.792e+00	0.0213	5095.0	14.87%	69408.2	14.40%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-2	-4.772e+00	0.0215	9906.0	28.92%	136474.2	28.31%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-4.602e+00	0.0254	4949.0	14.45%	67447.3	13.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-4.573e+00	0.0260	4195.0	12.25%	56997.0	11.82%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.566e+00	0.0260	5828.0	17.01%	79676.5	16.53%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-4.555e+00	0.0261	871.0	2.54%	11296.3	2.34%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.481e+00	0.0279	8019.0	23.41%	110241.0	22.87%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-1	-4.472e+00	0.0280	7472.0	21.81%	102613.1	21.29%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-4.463e+00	0.0281	3126.0	9.12%	42237.1	8.76%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-1	-4.428e+00	0.0289	1807.0	5.27%	24082.9	5.00%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.394e+00	0.0297	7250.0	21.16%	99550.1	20.65%
SeqBias: CG-repeat	CGCGCGCGCG	1e-1	-4.389e+00	0.0297	13298.0	38.82%	184167.2	38.21%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-1	-4.374e+00	0.0299	6997.0	20.42%	96031.3	19.92%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-4.360e+00	0.0302	2814.0	8.21%	37958.7	7.87%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-4.246e+00	0.0336	4329.0	12.64%	58965.4	12.23%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-4.225e+00	0.0341	890.0	2.60%	11605.5	2.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.224e+00	0.0341	3416.0	9.97%	46319.5	9.61%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-4.052e+00	0.0400	7678.0	22.41%	105670.1	21.92%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-1	-3.949e+00	0.0442	4655.0	13.59%	63599.0	13.19%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-1	-3.938e+00	0.0444	2373.0	6.93%	31990.1	6.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.870e+00	0.0472	2797.0	8.16%	37865.2	7.86%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.769e+00	0.0519	1264.0	3.69%	16785.9	3.48%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.751e+00	0.0526	1402.0	4.09%	18679.9	3.88%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-3.705e+00	0.0547	922.0	2.69%	12128.0	2.52%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.690e+00	0.0552	3126.0	9.12%	42474.4	8.81%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.681e+00	0.0554	3541.0	10.34%	48229.5	10.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.659e+00	0.0563	1120.0	3.27%	14838.6	3.08%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.648e+00	0.0566	1179.0	3.44%	15647.7	3.25%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-3.634e+00	0.0571	1084.0	3.16%	14351.7	2.98%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-3.631e+00	0.0571	3551.0	10.37%	48385.4	10.04%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-3.592e+00	0.0589	367.0	1.07%	4644.8	0.96%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-1	-3.579e+00	0.0593	9765.0	28.50%	135077.1	28.02%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-3.571e+00	0.0595	4713.0	13.76%	64551.8	13.39%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-3.562e+00	0.0597	837.0	2.44%	10996.8	2.28%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-1	-3.562e+00	0.0597	732.0	2.14%	9569.6	1.99%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.556e+00	0.0597	949.0	2.77%	12523.9	2.60%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.539e+00	0.0601	6941.0	20.26%	95618.8	19.84%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.497e+00	0.0623	268.0	0.78%	3337.2	0.69%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.496e+00	0.0623	1554.0	4.54%	20824.5	4.32%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-3.488e+00	0.0623	1570.0	4.58%	21046.1	4.37%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-3.469e+00	0.0631	7710.0	22.51%	106393.0	22.07%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-3.450e+00	0.0640	4835.0	14.11%	66298.3	13.75%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-3.411e+00	0.0662	2305.0	6.73%	31201.1	6.47%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-1	-3.399e+00	0.0667	2146.0	6.26%	29008.0	6.02%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.362e+00	0.0688	3193.0	9.32%	43513.9	9.03%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.262e+00	0.0756	5704.0	16.65%	78487.5	16.28%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-1	-3.240e+00	0.0769	1965.0	5.74%	26554.8	5.51%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-3.199e+00	0.0798	1213.0	3.54%	16209.5	3.36%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-1	-3.182e+00	0.0807	2282.0	6.66%	30952.5	6.42%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-3.170e+00	0.0812	2001.0	5.84%	27071.0	5.62%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-3.153e+00	0.0823	2444.0	7.13%	33203.6	6.89%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-3.121e+00	0.0845	897.0	2.62%	11896.9	2.47%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-3.002e+00	0.0947	3047.0	8.89%	41615.8	8.63%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.990e+00	0.0954	790.0	2.31%	10459.8	2.17%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.976e+00	0.0962	1739.0	5.08%	23508.1	4.88%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-1	-2.906e+00	0.1027	5389.0	15.73%	74260.9	15.41%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.905e+00	0.1027	1661.0	4.85%	22451.0	4.66%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.843e+00	0.1084	618.0	1.80%	8139.9	1.69%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-1	-2.821e+00	0.1102	1481.0	4.32%	19990.3	4.15%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-2.815e+00	0.1104	34258.0	100.00%	482003.8	99.99%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-2.791e+00	0.1125	464.0	1.35%	6054.2	1.26%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-2.734e+00	0.1186	368.0	1.07%	4763.1	0.99%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-2.729e+00	0.1186	11129.0	32.49%	154685.3	32.09%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-1	-2.726e+00	0.1186	5098.0	14.88%	70288.0	14.58%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.647e+00	0.1276	1954.0	5.70%	26580.5	5.51%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.633e+00	0.1288	1342.0	3.92%	18123.5	3.76%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.589e+00	0.1339	2043.0	5.96%	27832.4	5.77%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.579e+00	0.1346	603.0	1.76%	7981.5	1.66%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-2.561e+00	0.1365	1128.0	3.29%	15191.4	3.15%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.544e+00	0.1382	1332.0	3.89%	18009.5	3.74%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-2.522e+00	0.1406	508.0	1.48%	6695.0	1.39%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-2.512e+00	0.1413	390.0	1.14%	5092.9	1.06%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.469e+00	0.1470	2953.0	8.62%	40514.3	8.40%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.443e+00	0.1501	694.0	2.03%	9252.7	1.92%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-1	-2.412e+00	0.1542	6101.0	17.81%	84462.0	17.52%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-2.395e+00	0.1561	3439.0	10.04%	47311.0	9.81%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.378e+00	0.1581	8411.0	24.55%	116813.0	24.23%
SeqBias: TA-repeat	TATATATATA	1e-1	-2.366e+00	0.1594	12951.0	37.80%	180507.3	37.45%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-2.313e+00	0.1672	368.0	1.07%	4823.6	1.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-2.278e+00	0.1725	34256.0	99.99%	481968.3	99.98%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.277e+00	0.1725	1141.0	3.33%	15444.5	3.20%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.256e+00	0.1747	5043.0	14.72%	69761.3	14.47%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.214e+00	0.1814	3172.0	9.26%	43672.5	9.06%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.181e+00	0.1868	1787.0	5.22%	24420.7	5.07%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.158e+00	0.1903	110.0	0.32%	1367.6	0.28%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.136e+00	0.1936	3083.0	9.00%	42467.5	8.81%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.101e+00	0.1998	1710.0	4.99%	23379.5	4.85%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.051e+00	0.2091	44.0	0.13%	511.8	0.11%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.051e+00	0.2091	1089.0	3.18%	14788.5	3.07%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-2.014e+00	0.2153	1277.0	3.73%	17402.3	3.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.984e+00	0.2209	2373.0	6.93%	32643.8	6.77%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.977e+00	0.2214	618.0	1.80%	8306.5	1.72%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.969e+00	0.2224	3707.0	10.82%	51254.2	10.63%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.947e+00	0.2263	141.0	0.41%	1800.5	0.37%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.946e+00	0.2263	726.0	2.12%	9801.3	2.03%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.926e+00	0.2292	4267.0	12.46%	59101.0	12.26%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.913e+00	0.2313	2480.0	7.24%	34164.4	7.09%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.900e+00	0.2334	122.0	0.36%	1550.6	0.32%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.881e+00	0.2370	442.0	1.29%	5907.6	1.23%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.866e+00	0.2395	494.0	1.44%	6624.1	1.37%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.864e+00	0.2395	642.0	1.87%	8662.6	1.80%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.839e+00	0.2442	815.0	2.38%	11057.1	2.29%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.833e+00	0.2446	1171.0	3.42%	15989.3	3.32%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.804e+00	0.2510	3845.0	11.22%	53272.0	11.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.789e+00	0.2536	916.0	2.67%	12468.6	2.59%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.778e+00	0.2553	3761.0	10.98%	52111.8	10.81%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.667e+00	0.2843	605.0	1.77%	8198.2	1.70%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.648e+00	0.2885	2094.0	6.11%	28901.2	6.00%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.541e+00	0.3199	316.0	0.92%	4240.3	0.88%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.532e+00	0.3216	1773.0	5.18%	24476.7	5.08%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.512e+00	0.3268	1997.0	5.83%	27610.9	5.73%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.505e+00	0.3280	1773.0	5.18%	24488.8	5.08%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.490e+00	0.3318	3811.0	11.12%	52982.6	10.99%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.470e+00	0.3371	3628.0	10.59%	50433.5	10.46%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.449e+00	0.3429	3379.0	9.86%	46961.8	9.74%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.416e+00	0.3532	6619.0	19.32%	92389.1	19.17%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.410e+00	0.3538	134.0	0.39%	1766.9	0.37%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.408e+00	0.3538	2611.0	7.62%	36241.1	7.52%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.404e+00	0.3538	4115.0	12.01%	57295.2	11.89%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.399e+00	0.3540	1399.0	4.08%	19317.9	4.01%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.395e+00	0.3540	1573.0	4.59%	21746.3	4.51%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.380e+00	0.3579	9045.0	26.40%	126471.2	26.24%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.365e+00	0.3618	3410.0	9.95%	47448.0	9.84%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.365e+00	0.3618	589.0	1.72%	8054.2	1.67%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.325e+00	0.3739	3114.0	9.09%	43328.3	8.99%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.306e+00	0.3800	1567.0	4.57%	21703.0	4.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.305e+00	0.3800	2554.0	7.46%	35502.8	7.37%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.301e+00	0.3800	4420.0	12.90%	61642.9	12.79%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.292e+00	0.3800	478.0	1.40%	6533.0	1.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.292e+00	0.3800	478.0	1.40%	6533.0	1.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.261e+00	0.3902	5161.0	15.07%	72063.7	14.95%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.255e+00	0.3911	51.0	0.15%	655.5	0.14%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.252e+00	0.3911	5698.0	16.63%	79604.5	16.51%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.248e+00	0.3913	6077.0	17.74%	84926.5	17.62%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.233e+00	0.3958	2980.0	8.70%	41510.7	8.61%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.226e+00	0.3970	605.0	1.77%	8316.7	1.73%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.210e+00	0.4021	503.0	1.47%	6902.6	1.43%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.204e+00	0.4033	806.0	2.35%	11123.4	2.31%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.192e+00	0.4064	1267.0	3.70%	17562.8	3.64%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.184e+00	0.4083	1066.0	3.11%	14758.3	3.06%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.170e+00	0.4129	10959.0	31.99%	153576.5	31.86%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.146e+00	0.4214	171.0	0.50%	2312.7	0.48%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.136e+00	0.4242	144.0	0.42%	1941.2	0.40%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.108e+00	0.4346	88.0	0.26%	1174.5	0.24%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.093e+00	0.4396	2360.0	6.89%	32912.9	6.83%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.044e+00	0.4601	4552.0	13.29%	63698.6	13.21%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.031e+00	0.4648	169.0	0.49%	2304.6	0.48%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.017e+00	0.4697	42.0	0.12%	553.2	0.11%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.008e+00	0.4722	1208.0	3.53%	16821.5	3.49%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.809e-01	0.4837	72.0	0.21%	969.1	0.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-9.523e-01	0.4961	488.0	1.42%	6769.1	1.40%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.327e-01	0.5042	2857.0	8.34%	39994.6	8.30%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-8.912e-01	0.5239	567.0	1.66%	7895.4	1.64%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.910e-01	0.5239	547.0	1.60%	7615.5	1.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.880e-01	0.5239	1718.0	5.01%	24038.0	4.99%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.715e-01	0.5291	5165.0	15.08%	72472.6	15.03%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-8.657e-01	0.5304	2163.0	6.31%	30299.1	6.29%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.509e-01	0.5365	88.0	0.26%	1208.0	0.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-8.496e-01	0.5365	7910.0	23.09%	111088.9	23.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-8.377e-01	0.5402	2395.0	6.99%	33578.6	6.97%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-8.267e-01	0.5444	483.0	1.41%	6741.7	1.40%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-8.250e-01	0.5444	298.0	0.87%	4149.1	0.86%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.186e-01	0.5453	3215.0	9.38%	45116.4	9.36%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.165e-01	0.5453	4607.0	13.45%	64685.8	13.42%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-7.890e-01	0.5582	62.0	0.18%	854.1	0.18%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-7.826e-01	0.5600	34257.0	100.00%	482018.3	99.99%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.537e-01	0.5746	597.0	1.74%	8369.4	1.74%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.450e-01	0.5778	2589.0	7.56%	36380.0	7.55%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-7.347e-01	0.5819	1438.0	4.20%	20201.6	4.19%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.317e-01	0.5819	833.0	2.43%	11696.5	2.43%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-7.283e-01	0.5820	854.0	2.49%	11993.9	2.49%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.173e-01	0.5866	829.0	2.42%	11647.1	2.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.009e-01	0.5945	3188.0	9.31%	44845.3	9.30%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.934e-01	0.5971	373.0	1.09%	5243.1	1.09%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.414e-01	0.6270	397.0	1.16%	5600.1	1.16%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.230e-01	0.6367	1881.0	5.49%	26518.1	5.50%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.155e-01	0.6395	1434.0	4.19%	20227.0	4.20%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-6.022e-01	0.6461	511.0	1.49%	7224.4	1.50%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-5.985e-01	0.6465	2497.0	7.29%	35217.9	7.31%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-5.708e-01	0.6627	27.0	0.08%	388.0	0.08%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.444e-01	0.6783	430.0	1.26%	6106.1	1.27%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.073e-01	0.7018	500.0	1.46%	7114.0	1.48%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.042e-01	0.7019	30.0	0.09%	439.0	0.09%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.864e-01	0.7124	667.0	1.95%	9489.7	1.97%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-4.644e-01	0.7261	480.0	1.40%	6853.9	1.42%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-4.526e-01	0.7325	1371.0	4.00%	19470.4	4.04%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.432e-01	0.7372	376.0	1.10%	5388.2	1.12%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-4.385e-01	0.7385	667.0	1.95%	9519.3	1.97%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.114e-01	0.7566	1216.0	3.55%	17315.8	3.59%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.040e-01	0.7599	1963.0	5.73%	27889.0	5.79%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.034e-01	0.7599	920.0	2.69%	13130.4	2.72%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.701e-01	0.7815	1973.0	5.76%	28070.8	5.82%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-3.487e-01	0.7961	7890.0	23.03%	111628.3	23.16%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.352e-01	0.8046	44.0	0.13%	670.5	0.14%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.246e-01	0.8108	1991.0	5.81%	28384.5	5.89%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.186e-01	0.8134	515.0	1.50%	7441.4	1.54%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.108e-01	0.8173	5443.0	15.89%	77196.2	16.01%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.964e-01	0.8268	1287.0	3.76%	18441.1	3.83%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.885e-01	0.8310	1480.0	4.32%	21190.2	4.40%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-2.864e-01	0.8310	1836.0	5.36%	26242.4	5.44%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.850e-01	0.8310	323.0	0.94%	4719.3	0.98%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.834e-01	0.8310	1358.0	3.96%	19465.4	4.04%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.567e-01	0.8481	806.0	2.35%	11645.6	2.42%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.537e-01	0.8482	628.0	1.83%	9108.8	1.89%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.528e-01	0.8482	892.0	2.60%	12875.9	2.67%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.166e-01	0.8754	292.0	0.85%	4320.4	0.90%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.133e-01	0.8758	1411.0	4.12%	20318.6	4.22%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.048e-01	0.8808	6786.0	19.81%	96444.1	20.01%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.923e-01	0.8894	1655.0	4.83%	23826.6	4.94%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.904e-01	0.8894	2166.0	6.32%	31093.3	6.45%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.764e-01	0.8987	3882.0	11.33%	55465.9	11.51%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.727e-01	0.8995	1440.0	4.20%	20802.5	4.32%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.640e-01	0.9048	152.0	0.44%	2323.1	0.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.567e-01	0.9089	285.0	0.83%	4269.6	0.89%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.316e-01	0.9296	4833.0	14.11%	69091.5	14.33%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.121e-01	0.9452	6.0	0.02%	130.1	0.03%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.042e-01	0.9502	1002.0	2.92%	14686.8	3.05%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.011e-01	0.9505	4871.0	14.22%	69767.7	14.47%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.306e-02	0.9556	430.0	1.26%	6458.4	1.34%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.977e-02	0.9561	2952.0	8.62%	42573.6	8.83%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.900e-02	0.9561	605.0	1.77%	9003.2	1.87%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.727e-02	0.9561	282.0	0.82%	4308.8	0.89%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.621e-02	0.9561	688.0	2.01%	10209.9	2.12%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-8.365e-02	0.9561	633.0	1.85%	9420.7	1.95%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-7.940e-02	0.9561	4568.0	13.33%	65588.9	13.61%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-5.917e-02	0.9701	668.0	1.95%	9993.2	2.07%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-4.730e-02	0.9791	1067.0	3.11%	15809.2	3.28%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.660e-02	0.9791	346.0	1.01%	5332.5	1.11%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.443e-02	0.9965	34257.0	100.00%	482041.1	100.00%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.732e-02	1.0000	2193.0	6.40%	32267.9	6.69%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.246e-02	1.0000	782.0	2.28%	11925.5	2.47%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.170e-02	1.0000	1362.0	3.98%	20377.0	4.23%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-7.735e-03	1.0000	1875.0	5.47%	27888.0	5.79%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.268e-03	1.0000	3811.0	11.12%	55759.3	11.57%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.114e-03	1.0000	5749.0	16.78%	83796.4	17.38%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	265.0	0.77%	16388.5	3.40%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	34258.0	100.00%	482044.9	100.00%