Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 52332)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 481648)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-217	-5.000e+02	0.0000	19818.0	37.87%	149455.3	31.03%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-176	-4.075e+02	0.0000	22113.0	42.25%	172924.1	35.90%
SeqBias: GA-repeat	GAGAGAGAGA	1e-136	-3.137e+02	0.0000	47593.0	90.94%	420527.4	87.31%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-92	-2.120e+02	0.0000	46519.0	88.88%	412860.0	85.72%
SeqBias: CA-repeat	CACACACACA	1e-80	-1.855e+02	0.0000	43072.0	82.30%	379522.4	78.79%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-66	-1.528e+02	0.0000	36019.0	68.82%	313413.3	65.07%
SeqBias: CG bias	SSSSSSSSSS	1e-65	-1.519e+02	0.0000	50969.0	97.39%	462042.4	95.93%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-54	-1.263e+02	0.0000	34456.0	65.83%	300395.8	62.37%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-52	-1.205e+02	0.0000	32722.0	62.52%	284557.6	59.08%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-47	-1.102e+02	0.0000	32662.0	62.41%	284747.2	59.12%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-47	-1.099e+02	0.0000	39475.0	75.42%	349033.2	72.46%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-44	-1.022e+02	0.0000	30414.0	58.11%	264448.8	54.90%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-41	-9.500e+01	0.0000	24187.0	46.21%	207697.6	43.12%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-41	-9.448e+01	0.0000	28372.0	54.21%	246170.2	51.11%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-39	-9.021e+01	0.0000	27936.0	53.38%	242501.9	50.35%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-35	-8.258e+01	0.0000	25532.0	48.78%	221051.0	45.89%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-33	-7.715e+01	0.0000	18518.0	35.38%	157693.9	32.74%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-33	-7.599e+01	0.0000	27981.0	53.46%	244159.9	50.69%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-30	-7.005e+01	0.0000	21190.0	40.49%	182531.2	37.90%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-28	-6.589e+01	0.0000	27973.0	53.45%	245043.0	50.87%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-28	-6.588e+01	0.0000	27113.0	51.80%	237121.7	49.23%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-28	-6.565e+01	0.0000	17248.0	32.96%	147240.7	30.57%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-27	-6.359e+01	0.0000	21892.0	41.83%	189533.4	39.35%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-25	-5.800e+01	0.0000	25175.0	48.10%	220113.9	45.70%
SeqBias: A/T bias	WWWWWWWWWW	1e-25	-5.764e+01	0.0000	45490.0	86.92%	410586.3	85.24%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-23	-5.433e+01	0.0000	31020.0	59.27%	274406.5	56.97%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-23	-5.418e+01	0.0000	20911.0	39.95%	181551.6	37.69%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-23	-5.348e+01	0.0000	19494.0	37.25%	168743.6	35.03%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-22	-5.294e+01	0.0000	19519.0	37.29%	169027.0	35.09%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-22	-5.225e+01	0.0000	17937.0	34.27%	154755.4	32.13%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-22	-5.182e+01	0.0000	12812.0	24.48%	108671.4	22.56%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-22	-5.171e+01	0.0000	20702.0	39.56%	179911.3	37.35%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-22	-5.133e+01	0.0000	14682.0	28.05%	125485.5	26.05%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-22	-5.130e+01	0.0000	17562.0	33.56%	151460.6	31.45%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-21	-5.041e+01	0.0000	18196.0	34.77%	157293.9	32.66%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-21	-4.974e+01	0.0000	21117.0	40.35%	183905.9	38.18%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-21	-4.936e+01	0.0000	17182.0	32.83%	148225.4	30.77%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-21	-4.924e+01	0.0000	22557.0	43.10%	197098.2	40.92%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-21	-4.909e+01	0.0000	21271.0	40.64%	185380.1	38.49%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-20	-4.739e+01	0.0000	12051.0	23.03%	102282.1	21.24%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-20	-4.698e+01	0.0000	14869.0	28.41%	127602.4	26.49%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-20	-4.661e+01	0.0000	22054.0	42.14%	192803.9	40.03%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-20	-4.648e+01	0.0000	13806.0	26.38%	118095.7	24.52%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-20	-4.642e+01	0.0000	18164.0	34.71%	157432.0	32.69%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-19	-4.531e+01	0.0000	12093.0	23.11%	102857.9	21.35%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-18	-4.265e+01	0.0000	20248.0	38.69%	176799.4	36.71%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-18	-4.255e+01	0.0000	18551.0	35.45%	161381.2	33.51%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-18	-4.214e+01	0.0000	13226.0	25.27%	113331.2	23.53%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-18	-4.188e+01	0.0000	10465.0	20.00%	88650.1	18.41%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-18	-4.182e+01	0.0000	51950.0	99.26%	476163.5	98.86%
Tal1	CATCTG	1e-18	-4.167e+01	0.0000	14222.0	27.17%	122337.4	25.40%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-17	-4.139e+01	0.0000	17099.0	32.67%	148348.9	30.80%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-17	-4.056e+01	0.0000	18556.0	35.45%	161660.8	33.56%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-17	-4.000e+01	0.0000	14496.0	27.70%	124987.6	25.95%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-17	-3.966e+01	0.0000	16169.0	30.89%	140131.4	29.09%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-16	-3.894e+01	0.0000	20580.0	39.32%	180274.1	37.43%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-16	-3.877e+01	0.0000	15029.0	28.72%	129934.0	26.98%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-16	-3.857e+01	0.0000	13454.0	25.71%	115763.2	24.03%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-16	-3.817e+01	0.0000	16988.0	32.46%	147720.4	30.67%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-16	-3.705e+01	0.0000	16982.0	32.45%	147802.0	30.69%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-15	-3.676e+01	0.0000	11552.0	22.07%	98882.9	20.53%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-15	-3.660e+01	0.0000	19354.0	36.98%	169401.4	35.17%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-15	-3.628e+01	0.0000	14103.0	26.95%	121867.3	25.30%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-15	-3.618e+01	0.0000	13127.0	25.08%	113088.1	23.48%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-15	-3.599e+01	0.0000	12056.0	23.04%	103485.9	21.49%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-15	-3.460e+01	0.0000	20245.0	38.68%	177777.4	36.91%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-14	-3.425e+01	0.0000	9241.0	17.66%	78491.5	16.30%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-14	-3.397e+01	0.0000	14061.0	26.87%	121760.3	25.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-14	-3.234e+01	0.0000	11510.0	21.99%	98993.3	20.55%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-13	-3.199e+01	0.0000	8504.0	16.25%	72156.0	14.98%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-13	-3.148e+01	0.0000	11374.0	21.73%	97871.2	20.32%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-13	-3.131e+01	0.0000	8608.0	16.45%	73151.2	15.19%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-13	-3.097e+01	0.0000	12224.0	23.36%	105571.0	21.92%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-13	-3.026e+01	0.0000	10403.0	19.88%	89303.2	18.54%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-12	-2.983e+01	0.0000	18457.0	35.27%	162140.4	33.66%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-12	-2.879e+01	0.0000	17304.0	33.06%	151800.7	31.52%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-12	-2.825e+01	0.0000	8452.0	16.15%	72083.4	14.97%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-12	-2.792e+01	0.0000	13257.0	25.33%	115261.2	23.93%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-11	-2.762e+01	0.0000	9530.0	18.21%	81787.9	16.98%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-11	-2.741e+01	0.0000	14484.0	27.67%	126418.6	26.25%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-11	-2.726e+01	0.0000	9556.0	18.26%	82061.6	17.04%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-11	-2.693e+01	0.0000	10388.0	19.85%	89559.5	18.59%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-11	-2.681e+01	0.0000	9800.0	18.72%	84299.2	17.50%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-11	-2.639e+01	0.0000	4815.0	9.20%	40038.3	8.31%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-11	-2.615e+01	0.0000	11190.0	21.38%	96863.0	20.11%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-10	-2.500e+01	0.0000	7659.0	14.63%	65367.5	13.57%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-10	-2.489e+01	0.0000	10757.0	20.55%	93128.7	19.34%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-10	-2.478e+01	0.0000	12394.0	23.68%	107889.9	22.40%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-10	-2.422e+01	0.0000	10920.0	20.86%	94681.5	19.66%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-10	-2.382e+01	0.0000	8972.0	17.14%	77239.7	16.04%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-10	-2.376e+01	0.0000	11022.0	21.06%	95660.1	19.86%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-10	-2.374e+01	0.0000	14702.0	28.09%	128913.8	26.76%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-10	-2.321e+01	0.0000	8462.0	16.17%	72747.7	15.10%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-10	-2.320e+01	0.0000	15551.0	29.71%	136694.6	28.38%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-10	-2.310e+01	0.0000	7638.0	14.59%	65394.7	13.58%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-9	-2.238e+01	0.0000	10617.0	20.29%	92198.3	19.14%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.238e+01	0.0000	15413.0	29.45%	135568.5	28.15%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-9	-2.233e+01	0.0000	15971.0	30.52%	140644.9	29.20%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-9	-2.230e+01	0.0000	7697.0	14.71%	66015.1	13.71%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-9	-2.223e+01	0.0000	9663.0	18.46%	83639.8	17.36%
SeqBias: TA-repeat	TATATATATA	1e-9	-2.174e+01	0.0000	20752.0	39.65%	184322.8	38.27%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-9	-2.134e+01	0.0000	7478.0	14.29%	64172.2	13.32%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-9	-2.123e+01	0.0000	8365.0	15.98%	72122.6	14.97%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-9	-2.086e+01	0.0000	15564.0	29.74%	137180.5	28.48%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-8	-2.050e+01	0.0000	17543.0	33.52%	155244.0	32.23%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-8	-2.036e+01	0.0000	7519.0	14.37%	64658.9	13.42%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-8	-2.030e+01	0.0000	7502.0	14.33%	64513.4	13.39%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-1.999e+01	0.0000	7136.0	13.63%	61279.1	12.72%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-8	-1.991e+01	0.0000	13630.0	26.04%	119781.8	24.87%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-8	-1.976e+01	0.0000	10246.0	19.58%	89221.3	18.52%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-8	-1.976e+01	0.0000	9285.0	17.74%	80573.6	16.73%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-8	-1.961e+01	0.0000	7564.0	14.45%	65154.5	13.53%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-8	-1.943e+01	0.0000	12124.0	23.17%	106222.9	22.05%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-8	-1.934e+01	0.0000	7546.0	14.42%	65026.8	13.50%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-8	-1.866e+01	0.0000	5811.0	11.10%	49618.2	10.30%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-8	-1.850e+01	0.0000	4970.0	9.50%	42162.4	8.75%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-7	-1.823e+01	0.0000	6765.0	12.93%	58180.8	12.08%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-7	-1.811e+01	0.0000	5181.0	9.90%	44077.2	9.15%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-7	-1.803e+01	0.0000	12712.0	24.29%	111765.2	23.20%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-7	-1.795e+01	0.0000	6669.0	12.74%	57357.8	11.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-7	-1.781e+01	0.0000	6434.0	12.29%	55275.5	11.48%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-7	-1.727e+01	0.0000	9151.0	17.48%	79720.0	16.55%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-7	-1.698e+01	0.0000	8381.0	16.01%	72835.5	15.12%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-7	-1.695e+01	0.0000	6669.0	12.74%	57484.5	11.93%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-7	-1.683e+01	0.0000	9331.0	17.83%	81406.0	16.90%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-7	-1.681e+01	0.0000	6850.0	13.09%	59122.7	12.27%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-7	-1.675e+01	0.0000	8888.0	16.98%	77429.2	16.08%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-7	-1.668e+01	0.0000	11623.0	22.21%	102128.8	21.20%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-7	-1.655e+01	0.0000	7474.0	14.28%	64749.1	13.44%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-7	-1.634e+01	0.0000	11899.0	22.74%	104683.6	21.73%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-7	-1.628e+01	0.0000	7743.0	14.79%	67202.7	13.95%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.623e+01	0.0000	7767.0	14.84%	67424.1	14.00%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-6	-1.602e+01	0.0000	8119.0	15.51%	70618.8	14.66%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-6	-1.580e+01	0.0000	7256.0	13.86%	62898.9	13.06%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-6	-1.577e+01	0.0000	6246.0	11.93%	53853.7	11.18%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-6	-1.559e+01	0.0000	12406.0	23.70%	109404.9	22.71%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-6	-1.557e+01	0.0000	3320.0	6.34%	27870.4	5.79%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-6	-1.491e+01	0.0000	4792.0	9.16%	40985.9	8.51%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-6	-1.474e+01	0.0000	10546.0	20.15%	92708.5	19.25%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.445e+01	0.0000	9443.0	18.04%	82790.6	17.19%
SeqBias: CG-repeat	CGCGCGCGCG	1e-6	-1.444e+01	0.0000	20361.0	38.90%	182123.9	37.81%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-6	-1.443e+01	0.0000	7608.0	14.54%	66257.4	13.76%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-6	-1.413e+01	0.0000	8054.0	15.39%	70316.1	14.60%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-5	-1.378e+01	0.0000	4033.0	7.71%	34368.9	7.14%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-5	-1.372e+01	0.0000	6814.0	13.02%	59227.5	12.30%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-5	-1.364e+01	0.0000	5895.0	11.26%	50997.6	10.59%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-5	-1.362e+01	0.0000	10562.0	20.18%	93047.0	19.32%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.318e+01	0.0000	8577.0	16.39%	75183.7	15.61%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-5	-1.297e+01	0.0000	7296.0	13.94%	63675.0	13.22%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.292e+01	0.0000	4996.0	9.55%	43053.0	8.94%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-5	-1.288e+01	0.0000	4850.0	9.27%	41754.0	8.67%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-5	-1.285e+01	0.0000	5565.0	10.63%	48152.8	10.00%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-5	-1.284e+01	0.0000	7975.0	15.24%	69810.9	14.49%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.277e+01	0.0000	5578.0	10.66%	48279.6	10.02%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-5	-1.264e+01	0.0000	5622.0	10.74%	48691.4	10.11%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-5	-1.253e+01	0.0000	11299.0	21.59%	99925.9	20.75%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-5	-1.252e+01	0.0000	4926.0	9.41%	42480.1	8.82%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-5	-1.244e+01	0.0000	4043.0	7.72%	34615.0	7.19%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-5	-1.241e+01	0.0000	4961.0	9.48%	42808.1	8.89%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-5	-1.240e+01	0.0000	3660.0	6.99%	31214.1	6.48%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-5	-1.220e+01	0.0000	3928.0	7.51%	33620.5	6.98%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-5	-1.212e+01	0.0000	5431.0	10.38%	47054.2	9.77%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-5	-1.205e+01	0.0000	6124.0	11.70%	53281.0	11.06%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-5	-1.194e+01	0.0000	7403.0	14.14%	64802.8	13.45%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.194e+01	0.0000	4282.0	8.18%	36806.9	7.64%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-5	-1.188e+01	0.0000	4455.0	8.51%	38357.6	7.96%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-5	-1.184e+01	0.0000	8995.0	17.19%	79190.8	16.44%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-5	-1.160e+01	0.0000	5630.0	10.76%	48913.3	10.16%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.136e+01	0.0000	1773.0	3.39%	14670.9	3.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-4	-1.126e+01	0.0000	1379.0	2.63%	11247.4	2.34%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-4	-1.114e+01	0.0000	12722.0	24.31%	113130.8	23.49%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-4	-1.107e+01	0.0000	7560.0	14.44%	66365.6	13.78%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-4	-1.103e+01	0.0000	2381.0	4.55%	20039.7	4.16%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-4	-1.097e+01	0.0000	3079.0	5.88%	26220.6	5.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-4	-1.096e+01	0.0000	2218.0	4.24%	18610.5	3.86%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-4	-1.095e+01	0.0000	2873.0	5.49%	24396.3	5.07%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-1.088e+01	0.0000	5788.0	11.06%	50441.6	10.47%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-4	-1.079e+01	0.0000	3645.0	6.96%	31274.9	6.49%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-4	-1.070e+01	0.0000	9516.0	18.18%	84118.0	17.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-4	-1.060e+01	0.0001	4543.0	8.68%	39318.3	8.16%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-4	-1.052e+01	0.0001	5203.0	9.94%	45244.3	9.39%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.037e+01	0.0001	8560.0	16.36%	75527.1	15.68%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-4	-1.035e+01	0.0001	2117.0	4.04%	17780.3	3.69%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-4	-1.034e+01	0.0001	2079.0	3.97%	17447.5	3.62%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-4	-1.015e+01	0.0001	2625.0	5.02%	22288.3	4.63%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-4	-9.946e+00	0.0001	4372.0	8.35%	37880.6	7.86%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-4	-9.945e+00	0.0001	4216.0	8.06%	36484.1	7.57%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-9.825e+00	0.0001	4805.0	9.18%	41778.2	8.67%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-4	-9.756e+00	0.0001	1981.0	3.79%	16641.5	3.46%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-4	-9.646e+00	0.0001	9438.0	18.03%	83622.7	17.36%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-4	-9.469e+00	0.0002	2864.0	5.47%	24487.3	5.08%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-9.433e+00	0.0002	4884.0	9.33%	42547.6	8.83%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-4	-9.423e+00	0.0002	6542.0	12.50%	57471.1	11.93%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-3	-9.197e+00	0.0002	1004.0	1.92%	8149.3	1.69%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-3	-9.171e+00	0.0002	4944.0	9.45%	43127.1	8.95%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-3	-9.013e+00	0.0002	4361.0	8.33%	37919.7	7.87%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-3	-8.883e+00	0.0003	9480.0	18.11%	84164.4	17.47%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-8.858e+00	0.0003	5937.0	11.34%	52116.1	10.82%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-3	-8.855e+00	0.0003	5027.0	9.61%	43924.1	9.12%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-8.822e+00	0.0003	8127.0	15.53%	71912.5	14.93%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-8.640e+00	0.0003	145.0	0.28%	955.3	0.20%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-3	-8.526e+00	0.0004	2421.0	4.63%	20664.5	4.29%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-3	-8.521e+00	0.0004	3680.0	7.03%	31891.3	6.62%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-3	-8.435e+00	0.0004	5307.0	10.14%	46514.0	9.66%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-3	-8.393e+00	0.0004	4975.0	9.51%	43533.8	9.04%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-3	-8.369e+00	0.0004	5396.0	10.31%	47327.3	9.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-8.329e+00	0.0005	2723.0	5.20%	23373.9	4.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-3	-8.319e+00	0.0005	5415.0	10.35%	47507.8	9.86%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.319e+00	0.0005	3338.0	6.38%	28861.6	5.99%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-3	-8.298e+00	0.0005	10960.0	20.94%	97743.8	20.29%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-8.193e+00	0.0005	1663.0	3.18%	13994.4	2.91%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.166e+00	0.0005	8747.0	16.71%	77670.7	16.13%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-3	-8.141e+00	0.0005	2520.0	4.81%	21590.9	4.48%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-8.012e+00	0.0006	6851.0	13.09%	60528.2	12.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-3	-7.959e+00	0.0006	4581.0	8.75%	40062.3	8.32%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.818e+00	0.0007	3098.0	5.92%	26786.8	5.56%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-7.772e+00	0.0008	3978.0	7.60%	34675.5	7.20%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-3	-7.730e+00	0.0008	3785.0	7.23%	32950.4	6.84%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.624e+00	0.0009	2220.0	4.24%	18986.6	3.94%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-3	-7.605e+00	0.0009	8420.0	16.09%	74828.7	15.54%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-7.408e+00	0.0011	3349.0	6.40%	29091.1	6.04%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-3	-7.359e+00	0.0011	1153.0	2.20%	9591.2	1.99%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-3	-7.294e+00	0.0012	3768.0	7.20%	32866.6	6.82%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-3	-7.248e+00	0.0012	4635.0	8.86%	40670.7	8.44%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-3	-7.218e+00	0.0013	2784.0	5.32%	24064.7	5.00%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-3	-7.113e+00	0.0014	2442.0	4.67%	21026.2	4.37%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-3	-7.112e+00	0.0014	4099.0	7.83%	35870.0	7.45%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-6.900e+00	0.0017	3339.0	6.38%	29079.1	6.04%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.794e+00	0.0019	1872.0	3.58%	15994.6	3.32%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.775e+00	0.0019	3473.0	6.64%	30302.0	6.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.656e+00	0.0022	7214.0	13.78%	64104.3	13.31%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-2	-6.626e+00	0.0022	1734.0	3.31%	14789.2	3.07%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-6.620e+00	0.0022	1292.0	2.47%	10881.4	2.26%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-2	-6.524e+00	0.0024	2259.0	4.32%	19472.6	4.04%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-6.506e+00	0.0025	3823.0	7.30%	33491.7	6.95%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-2	-6.360e+00	0.0028	258.0	0.49%	1945.0	0.40%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-2	-6.271e+00	0.0031	2501.0	4.78%	21668.8	4.50%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-2	-6.139e+00	0.0035	7469.0	14.27%	66539.5	13.81%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.064e+00	0.0038	1833.0	3.50%	15736.1	3.27%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-6.010e+00	0.0040	2672.0	5.11%	23237.9	4.82%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-5.944e+00	0.0042	2089.0	3.99%	18033.3	3.74%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.888e+00	0.0044	2497.0	4.77%	21688.6	4.50%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-2	-5.829e+00	0.0047	5713.0	10.92%	50688.1	10.52%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-2	-5.812e+00	0.0047	2116.0	4.04%	18292.9	3.80%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-5.801e+00	0.0048	2373.0	4.53%	20591.7	4.28%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-5.695e+00	0.0053	2523.0	4.82%	21950.6	4.56%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-2	-5.458e+00	0.0067	3778.0	7.22%	33275.4	6.91%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.457e+00	0.0067	2831.0	5.41%	24751.5	5.14%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-5.438e+00	0.0068	2426.0	4.64%	21120.2	4.38%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-5.437e+00	0.0068	3173.0	6.06%	27829.8	5.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.366e+00	0.0072	1812.0	3.46%	15639.2	3.25%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-2	-5.306e+00	0.0076	3547.0	6.78%	31221.1	6.48%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-2	-5.288e+00	0.0077	2030.0	3.88%	17597.1	3.65%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-5.285e+00	0.0077	1037.0	1.98%	8766.3	1.82%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-5.125e+00	0.0090	5940.0	11.35%	52909.2	10.98%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-5.087e+00	0.0093	2674.0	5.11%	23402.9	4.86%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-5.075e+00	0.0094	7811.0	14.92%	69922.5	14.52%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-2	-5.056e+00	0.0096	1258.0	2.40%	10747.7	2.23%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-2	-4.965e+00	0.0104	4860.0	9.29%	43157.1	8.96%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-2	-4.960e+00	0.0104	1364.0	2.61%	11700.5	2.43%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-2	-4.950e+00	0.0105	3577.0	6.83%	31560.6	6.55%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-4.949e+00	0.0105	1358.0	2.59%	11648.4	2.42%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-4.908e+00	0.0109	8690.0	16.60%	77972.4	16.19%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-4.897e+00	0.0110	982.0	1.88%	8320.7	1.73%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-2	-4.792e+00	0.0121	706.0	1.35%	5899.7	1.22%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-2	-4.754e+00	0.0125	1849.0	3.53%	16055.3	3.33%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-2	-4.715e+00	0.0130	1823.0	3.48%	15828.5	3.29%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-2	-4.673e+00	0.0135	4675.0	8.93%	41549.0	8.63%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-4.671e+00	0.0135	2261.0	4.32%	19761.8	4.10%
SeqBias: C/A-bias	MMMMMMMMMM	1e-2	-4.642e+00	0.0138	52337.0	100.00%	481613.7	99.99%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.584e+00	0.0146	3218.0	6.15%	28392.0	5.89%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-4.542e+00	0.0152	3854.0	7.36%	34146.4	7.09%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-4.509e+00	0.0156	3045.0	5.82%	26846.0	5.57%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-4.487e+00	0.0159	1208.0	2.31%	10370.8	2.15%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-1	-4.461e+00	0.0162	1383.0	2.64%	11932.7	2.48%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-4.447e+00	0.0164	808.0	1.54%	6829.5	1.42%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.443e+00	0.0164	4646.0	8.88%	41339.0	8.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.356e+00	0.0179	2731.0	5.22%	24044.7	4.99%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-4.269e+00	0.0194	608.0	1.16%	5085.2	1.06%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.256e+00	0.0196	2444.0	4.67%	21477.3	4.46%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-1	-4.237e+00	0.0199	1380.0	2.64%	11935.6	2.48%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-4.175e+00	0.0211	2726.0	5.21%	24033.5	4.99%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-4.128e+00	0.0220	1690.0	3.23%	14724.0	3.06%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-1	-4.117e+00	0.0222	2970.0	5.67%	26246.8	5.45%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.087e+00	0.0228	1298.0	2.48%	11223.0	2.33%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-4.048e+00	0.0236	3119.0	5.96%	27606.2	5.73%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-4.026e+00	0.0241	1429.0	2.73%	12402.5	2.57%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.962e+00	0.0256	3119.0	5.96%	27624.4	5.74%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-3.904e+00	0.0270	2322.0	4.44%	20442.1	4.24%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.824e+00	0.0292	1805.0	3.45%	15804.4	3.28%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-3.731e+00	0.0319	3021.0	5.77%	26787.8	5.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-3.725e+00	0.0320	978.0	1.87%	8416.5	1.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-3.724e+00	0.0320	2213.0	4.23%	19493.7	4.05%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.707e+00	0.0323	6174.0	11.80%	55418.6	11.51%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.685e+00	0.0329	1083.0	2.07%	9357.2	1.94%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-1	-3.601e+00	0.0357	4782.0	9.14%	42787.6	8.88%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-3.587e+00	0.0361	1028.0	1.96%	8879.4	1.84%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.580e+00	0.0362	3214.0	6.14%	28567.1	5.93%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-3.556e+00	0.0369	52336.0	100.00%	481606.1	99.99%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-3.494e+00	0.0392	789.0	1.51%	6762.7	1.40%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.487e+00	0.0394	2377.0	4.54%	21018.1	4.36%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-3.453e+00	0.0406	562.0	1.07%	4755.1	0.99%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.450e+00	0.0406	576.0	1.10%	4879.5	1.01%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-3.404e+00	0.0423	62.0	0.12%	438.7	0.09%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.316e+00	0.0460	113.0	0.22%	862.8	0.18%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.272e+00	0.0480	958.0	1.83%	8295.1	1.72%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-1	-3.183e+00	0.0523	1690.0	3.23%	14879.8	3.09%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-3.159e+00	0.0534	511.0	0.98%	4333.7	0.90%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.095e+00	0.0567	1381.0	2.64%	12114.0	2.52%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-3.084e+00	0.0571	547.0	1.05%	4659.5	0.97%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-3.082e+00	0.0571	932.0	1.78%	8088.5	1.68%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.063e+00	0.0580	1424.0	2.72%	12505.7	2.60%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-1	-3.039e+00	0.0592	1626.0	3.11%	14328.6	2.97%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.988e+00	0.0621	1104.0	2.11%	9642.9	2.00%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-2.980e+00	0.0624	797.0	1.52%	6895.6	1.43%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.969e+00	0.0629	4927.0	9.41%	44290.0	9.20%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-1	-2.960e+00	0.0632	868.0	1.66%	7532.7	1.56%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-2.918e+00	0.0658	1970.0	3.76%	17456.7	3.62%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-2.860e+00	0.0695	399.0	0.76%	3372.4	0.70%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-2.844e+00	0.0704	1465.0	2.80%	12912.5	2.68%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.797e+00	0.0735	793.0	1.52%	6883.1	1.43%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.771e+00	0.0752	1058.0	2.02%	9262.7	1.92%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-2.747e+00	0.0769	1917.0	3.66%	17012.4	3.53%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-2.745e+00	0.0769	1672.0	3.19%	14798.1	3.07%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-2.678e+00	0.0818	925.0	1.77%	8082.9	1.68%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.668e+00	0.0823	846.0	1.62%	7375.5	1.53%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.617e+00	0.0864	168.0	0.32%	1367.3	0.28%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.617e+00	0.0864	2024.0	3.87%	18008.3	3.74%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.608e+00	0.0866	898.0	1.72%	7850.3	1.63%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-2.561e+00	0.0905	1075.0	2.05%	9448.9	1.96%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.538e+00	0.0924	3885.0	7.42%	34935.1	7.25%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-2.531e+00	0.0928	1322.0	2.53%	11679.6	2.42%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.417e+00	0.1036	215.0	0.41%	1790.9	0.37%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-2.411e+00	0.1040	2280.0	4.36%	20377.5	4.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.342e+00	0.1110	4054.0	7.75%	36537.3	7.59%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.315e+00	0.1138	3100.0	5.92%	27857.0	5.78%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.257e+00	0.1201	890.0	1.70%	7833.0	1.63%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.156e+00	0.1326	7838.0	14.98%	71186.9	14.78%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.154e+00	0.1326	6207.0	11.86%	56266.5	11.68%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.098e+00	0.1397	472.0	0.90%	4101.0	0.85%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.062e+00	0.1444	816.0	1.56%	7197.3	1.49%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.039e+00	0.1472	140.0	0.27%	1160.6	0.24%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.996e+00	0.1532	19.0	0.04%	129.2	0.03%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.935e+00	0.1624	486.0	0.93%	4247.5	0.88%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.884e+00	0.1705	1635.0	3.12%	14650.4	3.04%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.836e+00	0.1784	592.0	1.13%	5214.7	1.08%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.815e+00	0.1816	1533.0	2.93%	13740.8	2.85%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.769e+00	0.1896	1902.0	3.63%	17108.1	3.55%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.760e+00	0.1909	1857.0	3.55%	16701.6	3.47%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.681e+00	0.2060	748.0	1.43%	6649.0	1.38%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.568e+00	0.2298	52336.0	100.00%	481630.1	99.99%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.525e+00	0.2393	1331.0	2.54%	11975.4	2.49%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.515e+00	0.2409	2234.0	4.27%	20211.1	4.20%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.514e+00	0.2409	1037.0	1.98%	9303.6	1.93%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.476e+00	0.2492	201.0	0.38%	1746.4	0.36%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.442e+00	0.2571	47.0	0.09%	383.9	0.08%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.429e+00	0.2596	3579.0	6.84%	32539.9	6.76%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.428e+00	0.2596	1098.0	2.10%	9878.9	2.05%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.415e+00	0.2617	258.0	0.49%	2264.6	0.47%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.268e+00	0.3024	680.0	1.30%	6110.8	1.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.268e+00	0.3024	730.0	1.39%	6565.9	1.36%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.268e+00	0.3024	730.0	1.39%	6565.9	1.36%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.261e+00	0.3024	724.0	1.38%	6512.1	1.35%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.246e+00	0.3059	488.0	0.93%	4369.5	0.91%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.232e+00	0.3093	1263.0	2.41%	11434.3	2.37%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.209e+00	0.3157	77.0	0.15%	661.2	0.14%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.182e+00	0.3235	668.0	1.28%	6019.4	1.25%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.177e+00	0.3242	1015.0	1.94%	9185.4	1.91%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.132e+00	0.3381	744.0	1.42%	6723.5	1.40%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.123e+00	0.3402	258.0	0.49%	2301.7	0.48%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-9.671e-01	0.3966	64.0	0.12%	562.4	0.12%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-9.566e-01	0.3997	608.0	1.16%	5522.2	1.15%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-9.386e-01	0.4059	476.0	0.91%	4320.0	0.90%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.332e-01	0.4070	171.0	0.33%	1536.8	0.32%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-7.831e-01	0.4716	57.0	0.11%	513.9	0.11%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.990e-01	0.5116	519.0	0.99%	4771.2	0.99%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.461e-01	0.5380	133.0	0.25%	1227.8	0.25%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.207e-01	0.5504	585.0	1.12%	5402.2	1.12%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.791e-01	0.5723	570.0	1.09%	5277.1	1.10%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.751e-01	0.5730	1110.0	2.12%	10262.3	2.13%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-5.229e-01	0.6022	1389.0	2.65%	12863.6	2.67%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-4.126e-01	0.6706	52337.0	100.00%	481654.3	100.00%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-3.732e-01	0.6957	68.0	0.13%	662.1	0.14%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.756e-01	0.7650	238.0	0.45%	2293.6	0.48%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.427e-01	0.7886	771.0	1.47%	7304.9	1.52%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.022e-03	0.9986	1758.0	3.36%	17255.9	3.58%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	52337.0	100.00%	481658.2	100.00%