Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 27245)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 471899)	% of Background Sequences with Motif
SeqBias: GA-repeat	GAGAGAGAGA	1e-411	-9.476e+02	0.0000	26101.0	95.80%	415979.2	88.15%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-371	-8.554e+02	0.0000	20960.0	76.93%	307240.1	65.11%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-366	-8.437e+02	0.0000	19939.0	73.19%	288163.4	61.07%
SeqBias: CA-repeat	CACACACACA	1e-363	-8.376e+02	0.0000	23960.0	87.95%	368796.0	78.16%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-326	-7.512e+02	0.0000	18894.0	69.35%	272139.1	57.67%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-323	-7.440e+02	0.0000	18744.0	68.80%	269660.4	57.15%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-322	-7.418e+02	0.0000	25864.0	94.93%	415241.9	88.00%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-310	-7.155e+02	0.0000	16803.0	61.68%	235857.7	49.98%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-300	-6.925e+02	0.0000	15181.0	55.72%	208509.0	44.19%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-293	-6.750e+02	0.0000	16439.0	60.34%	231055.1	48.97%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-284	-6.544e+02	0.0000	14233.0	52.24%	193847.8	41.08%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-277	-6.380e+02	0.0000	12146.0	44.58%	159743.1	33.85%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-276	-6.365e+02	0.0000	13527.0	49.65%	182672.5	38.71%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-271	-6.246e+02	0.0000	13953.0	51.21%	190313.7	40.33%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-259	-5.966e+02	0.0000	16302.0	59.84%	231902.5	49.14%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-258	-5.964e+02	0.0000	21723.0	79.73%	331781.5	70.31%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-257	-5.919e+02	0.0000	11694.0	42.92%	154157.4	32.67%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-247	-5.700e+02	0.0000	12752.0	46.81%	172451.6	36.55%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-246	-5.666e+02	0.0000	17405.0	63.89%	252732.9	53.56%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-240	-5.527e+02	0.0000	16337.0	59.97%	234434.4	49.68%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-237	-5.468e+02	0.0000	10793.0	39.62%	141350.0	29.95%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-234	-5.409e+02	0.0000	11964.0	43.91%	160644.4	34.04%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-231	-5.335e+02	0.0000	12610.0	46.29%	171632.1	36.37%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-230	-5.300e+02	0.0000	13464.0	49.42%	186058.9	39.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-227	-5.247e+02	0.0000	9923.0	36.42%	128299.6	27.19%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-227	-5.244e+02	0.0000	18434.0	67.66%	273158.9	57.89%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-224	-5.163e+02	0.0000	13381.0	49.12%	185270.8	39.26%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-217	-5.004e+02	0.0000	11098.0	40.74%	148198.3	31.41%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-213	-4.921e+02	0.0000	10650.0	39.09%	141284.9	29.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-212	-4.882e+02	0.0000	9647.0	35.41%	125371.7	26.57%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-208	-4.809e+02	0.0000	10513.0	38.59%	139547.7	29.57%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-208	-4.806e+02	0.0000	15905.0	58.38%	230186.3	48.78%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-208	-4.795e+02	0.0000	9592.0	35.21%	124849.5	26.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-207	-4.783e+02	0.0000	11376.0	41.76%	153687.0	32.57%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-203	-4.693e+02	0.0000	15286.0	56.11%	219962.5	46.61%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-202	-4.665e+02	0.0000	10561.0	38.76%	140942.0	29.87%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-201	-4.636e+02	0.0000	10810.0	39.68%	145105.0	30.75%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-199	-4.595e+02	0.0000	9323.0	34.22%	121401.2	25.73%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-197	-4.555e+02	0.0000	13315.0	48.87%	186943.1	39.62%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-195	-4.510e+02	0.0000	8769.0	32.19%	113005.0	23.95%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-192	-4.427e+02	0.0000	8757.0	32.14%	113153.3	23.98%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-189	-4.364e+02	0.0000	8952.0	32.86%	116489.7	24.69%
SeqBias: A/T bias	WWWWWWWWWW	1e-186	-4.288e+02	0.0000	24428.0	89.66%	393102.5	83.31%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-183	-4.216e+02	0.0000	12346.0	45.32%	172326.4	36.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-182	-4.204e+02	0.0000	12976.0	47.63%	182930.4	38.77%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-181	-4.189e+02	0.0000	12781.0	46.91%	179732.9	38.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-181	-4.173e+02	0.0000	6907.0	25.35%	85497.5	18.12%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-180	-4.166e+02	0.0000	7963.0	29.23%	101793.2	21.57%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-180	-4.150e+02	0.0000	9852.0	36.16%	131775.3	27.93%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-180	-4.150e+02	0.0000	7586.0	27.84%	96009.9	20.35%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-177	-4.077e+02	0.0000	8530.0	31.31%	111044.0	23.53%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-176	-4.053e+02	0.0000	12356.0	45.35%	173287.6	36.72%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-175	-4.036e+02	0.0000	11528.0	42.31%	159627.9	33.83%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-171	-3.947e+02	0.0000	13760.0	50.51%	197487.8	41.85%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-170	-3.927e+02	0.0000	10809.0	39.67%	148337.4	31.44%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-166	-3.831e+02	0.0000	10258.0	37.65%	139818.0	29.63%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-165	-3.821e+02	0.0000	7183.0	26.37%	91111.2	19.31%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-165	-3.803e+02	0.0000	9844.0	36.13%	133243.7	28.24%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-161	-3.729e+02	0.0000	9490.0	34.83%	127885.4	27.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-161	-3.726e+02	0.0000	9990.0	36.67%	135973.1	28.82%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-160	-3.690e+02	0.0000	10724.0	39.36%	148105.5	31.39%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-157	-3.625e+02	0.0000	7840.0	28.78%	102156.6	21.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-157	-3.617e+02	0.0000	8934.0	32.79%	119500.7	25.32%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-150	-3.471e+02	0.0000	7211.0	26.47%	93008.1	19.71%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-149	-3.451e+02	0.0000	7258.0	26.64%	93825.9	19.88%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-149	-3.442e+02	0.0000	6325.0	23.22%	79486.3	16.84%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-148	-3.418e+02	0.0000	8313.0	30.51%	110549.7	23.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-147	-3.406e+02	0.0000	6283.0	23.06%	78988.5	16.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-147	-3.391e+02	0.0000	6217.0	22.82%	78044.1	16.54%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-145	-3.353e+02	0.0000	7793.0	28.60%	102635.7	21.75%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-141	-3.258e+02	0.0000	7686.0	28.21%	101386.3	21.49%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-138	-3.184e+02	0.0000	7034.0	25.82%	91518.6	19.39%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-137	-3.173e+02	0.0000	7102.0	26.07%	92625.0	19.63%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-136	-3.139e+02	0.0000	7624.0	27.98%	100963.3	21.40%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-136	-3.136e+02	0.0000	7867.0	28.88%	104814.8	22.21%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-134	-3.091e+02	0.0000	8929.0	32.77%	121981.1	25.85%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-133	-3.080e+02	0.0000	8572.0	31.46%	116305.3	24.65%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-132	-3.048e+02	0.0000	6458.0	23.70%	83191.4	17.63%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-132	-3.045e+02	0.0000	10908.0	40.04%	154506.1	32.74%
SeqBias: TA-repeat	TATATATATA	1e-130	-3.011e+02	0.0000	11887.0	43.63%	170979.0	36.23%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-129	-2.983e+02	0.0000	7391.0	27.13%	98035.3	20.78%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-128	-2.954e+02	0.0000	6562.0	24.09%	85221.8	18.06%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-126	-2.905e+02	0.0000	9058.0	33.25%	125025.5	26.50%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-124	-2.876e+02	0.0000	6949.0	25.51%	91608.2	19.41%
SeqBias: CG bias	SSSSSSSSSS	1e-122	-2.829e+02	0.0000	26928.0	98.84%	455476.9	96.52%
SeqBias: CG-repeat	CGCGCGCGCG	1e-121	-2.798e+02	0.0000	14368.0	52.74%	214376.4	45.43%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-120	-2.776e+02	0.0000	4923.0	18.07%	60955.7	12.92%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-120	-2.774e+02	0.0000	9992.0	36.68%	140946.0	29.87%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-119	-2.741e+02	0.0000	7315.0	26.85%	98015.8	20.77%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-117	-2.712e+02	0.0000	4545.0	16.68%	55557.6	11.77%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-116	-2.681e+02	0.0000	5020.0	18.43%	62803.2	13.31%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-116	-2.677e+02	0.0000	4896.0	17.97%	60953.1	12.92%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-116	-2.675e+02	0.0000	7079.0	25.98%	94626.3	20.05%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-116	-2.674e+02	0.0000	7927.0	29.10%	108078.1	22.90%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-114	-2.634e+02	0.0000	5318.0	19.52%	67520.2	14.31%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-114	-2.633e+02	0.0000	8344.0	30.63%	114972.4	24.36%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-113	-2.609e+02	0.0000	5679.0	20.84%	73152.3	15.50%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-111	-2.572e+02	0.0000	9910.0	36.37%	140767.6	29.83%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-110	-2.547e+02	0.0000	5732.0	21.04%	74249.4	15.73%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-110	-2.538e+02	0.0000	10110.0	37.11%	144258.3	30.57%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-108	-2.503e+02	0.0000	4825.0	17.71%	60606.7	12.84%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-108	-2.493e+02	0.0000	4355.0	15.99%	53594.3	11.36%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-107	-2.468e+02	0.0000	5560.0	20.41%	71969.6	15.25%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-107	-2.464e+02	0.0000	8868.0	32.55%	124379.4	26.36%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-106	-2.463e+02	0.0000	6871.0	25.22%	92417.0	19.59%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-105	-2.433e+02	0.0000	5702.0	20.93%	74319.5	15.75%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-105	-2.419e+02	0.0000	5237.0	19.22%	67237.6	14.25%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-103	-2.374e+02	0.0000	6654.0	24.42%	89457.6	18.96%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-102	-2.359e+02	0.0000	4360.0	16.00%	54216.9	11.49%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-102	-2.357e+02	0.0000	6861.0	25.18%	92814.0	19.67%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-100	-2.321e+02	0.0000	8978.0	32.95%	127007.8	26.92%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-94	-2.177e+02	0.0000	3858.0	14.16%	47473.8	10.06%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-93	-2.149e+02	0.0000	5480.0	20.11%	72264.0	15.31%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-93	-2.148e+02	0.0000	3919.0	14.38%	48502.7	10.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-91	-2.098e+02	0.0000	5878.0	21.58%	78718.0	16.68%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-90	-2.083e+02	0.0000	4571.0	16.78%	58610.2	12.42%
Tal1	CATCTG	1e-88	-2.047e+02	0.0000	7805.0	28.65%	109643.6	23.24%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-87	-2.013e+02	0.0000	5129.0	18.83%	67508.5	14.31%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-86	-1.993e+02	0.0000	5161.0	18.94%	68104.4	14.43%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-86	-1.987e+02	0.0000	5076.0	18.63%	66817.0	14.16%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-85	-1.969e+02	0.0000	4345.0	15.95%	55700.4	11.80%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-85	-1.969e+02	0.0000	6684.0	24.53%	92145.3	19.53%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-84	-1.956e+02	0.0000	4166.0	15.29%	53046.8	11.24%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-84	-1.955e+02	0.0000	5461.0	20.04%	72954.2	15.46%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-83	-1.922e+02	0.0000	5389.0	19.78%	72008.9	15.26%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-81	-1.888e+02	0.0000	5493.0	20.16%	73813.3	15.64%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-81	-1.878e+02	0.0000	6124.0	22.48%	83785.6	17.76%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-81	-1.874e+02	0.0000	4741.0	17.40%	62215.7	13.18%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-81	-1.874e+02	0.0000	3944.0	14.48%	50064.7	10.61%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-81	-1.872e+02	0.0000	5638.0	20.69%	76167.8	16.14%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-81	-1.868e+02	0.0000	3998.0	14.67%	50906.3	10.79%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-80	-1.851e+02	0.0000	6832.0	25.08%	95200.4	20.17%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-80	-1.845e+02	0.0000	5367.0	19.70%	72076.7	15.27%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-79	-1.822e+02	0.0000	4585.0	16.83%	60076.6	12.73%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-78	-1.808e+02	0.0000	3445.0	12.64%	42869.3	9.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-78	-1.800e+02	0.0000	3525.0	12.94%	44097.5	9.35%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-78	-1.800e+02	0.0000	2810.0	10.31%	33547.9	7.11%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-77	-1.788e+02	0.0000	3182.0	11.68%	39050.6	8.28%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-77	-1.784e+02	0.0000	4124.0	15.14%	53207.9	11.28%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-75	-1.749e+02	0.0000	3458.0	12.69%	43320.0	9.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-75	-1.742e+02	0.0000	4661.0	17.11%	61654.8	13.07%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-75	-1.732e+02	0.0000	4115.0	15.10%	53321.4	11.30%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-75	-1.727e+02	0.0000	4775.0	17.53%	63494.3	13.46%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-74	-1.707e+02	0.0000	3805.0	13.97%	48730.8	10.33%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-73	-1.696e+02	0.0000	3533.0	12.97%	44679.2	9.47%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-71	-1.655e+02	0.0000	4834.0	17.74%	64796.5	13.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-71	-1.654e+02	0.0000	5006.0	18.37%	67482.2	14.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-71	-1.652e+02	0.0000	4377.0	16.07%	57738.6	12.24%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-71	-1.641e+02	0.0000	4672.0	17.15%	62354.2	13.21%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-71	-1.638e+02	0.0000	3472.0	12.74%	44024.1	9.33%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-70	-1.632e+02	0.0000	6095.0	22.37%	84778.0	17.97%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-70	-1.626e+02	0.0000	4638.0	17.02%	61909.0	13.12%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-70	-1.625e+02	0.0000	2956.0	10.85%	36387.3	7.71%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-70	-1.612e+02	0.0000	6154.0	22.59%	85841.4	18.19%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-67	-1.565e+02	0.0000	3743.0	13.74%	48470.1	10.27%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-67	-1.565e+02	0.0000	2830.0	10.39%	34777.4	7.37%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-67	-1.559e+02	0.0000	4309.0	15.82%	57176.7	12.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-67	-1.554e+02	0.0000	4756.0	17.46%	64135.8	13.59%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-67	-1.547e+02	0.0000	2588.0	9.50%	31294.8	6.63%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-65	-1.510e+02	0.0000	5423.0	19.91%	74867.1	15.87%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-65	-1.501e+02	0.0000	3167.0	11.62%	40071.6	8.49%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-64	-1.494e+02	0.0000	3179.0	11.67%	40284.3	8.54%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-64	-1.487e+02	0.0000	7231.0	26.54%	103990.8	22.04%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-64	-1.485e+02	0.0000	4639.0	17.03%	62700.1	13.29%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-63	-1.466e+02	0.0000	3716.0	13.64%	48549.5	10.29%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-63	-1.461e+02	0.0000	2808.0	10.31%	34893.1	7.39%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-63	-1.461e+02	0.0000	4928.0	18.09%	67364.4	14.28%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-63	-1.456e+02	0.0000	3275.0	12.02%	41903.1	8.88%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-63	-1.453e+02	0.0000	27171.0	99.73%	466160.7	98.79%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-63	-1.451e+02	0.0000	3259.0	11.96%	41688.9	8.83%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-62	-1.436e+02	0.0000	3168.0	11.63%	40388.2	8.56%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-62	-1.429e+02	0.0000	3423.0	12.56%	44276.5	9.38%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-61	-1.415e+02	0.0000	2921.0	10.72%	36778.1	7.79%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-61	-1.406e+02	0.0000	2566.0	9.42%	31550.6	6.69%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-60	-1.398e+02	0.0000	3518.0	12.91%	45874.8	9.72%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-60	-1.397e+02	0.0000	2280.0	8.37%	27398.9	5.81%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-60	-1.397e+02	0.0000	1732.0	6.36%	19556.8	4.14%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-60	-1.393e+02	0.0000	2981.0	10.94%	37778.1	8.01%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-59	-1.381e+02	0.0000	2933.0	10.77%	37115.1	7.87%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-59	-1.379e+02	0.0000	5383.0	19.76%	75048.9	15.90%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-59	-1.370e+02	0.0000	2335.0	8.57%	28306.8	6.00%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-58	-1.355e+02	0.0000	3920.0	14.39%	52270.7	11.08%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-58	-1.349e+02	0.0000	5728.0	21.02%	80733.6	17.11%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-58	-1.344e+02	0.0000	3139.0	11.52%	40387.2	8.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-58	-1.343e+02	0.0000	2787.0	10.23%	35103.2	7.44%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-58	-1.342e+02	0.0000	3063.0	11.24%	39251.1	8.32%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-58	-1.340e+02	0.0000	3960.0	14.54%	52967.7	11.22%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-57	-1.329e+02	0.0000	3704.0	13.60%	49083.1	10.40%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-57	-1.321e+02	0.0000	2740.0	10.06%	34502.2	7.31%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-56	-1.295e+02	0.0000	2738.0	10.05%	34590.3	7.33%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-55	-1.286e+02	0.0000	2410.0	8.85%	29758.5	6.31%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-54	-1.249e+02	0.0000	2615.0	9.60%	32963.7	6.99%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-53	-1.229e+02	0.0000	4816.0	17.68%	67026.0	14.20%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-52	-1.218e+02	0.0000	5072.0	18.62%	71155.3	15.08%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-52	-1.216e+02	0.0000	2008.0	7.37%	24159.3	5.12%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-51	-1.194e+02	0.0000	4970.0	18.24%	69693.9	14.77%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-50	-1.174e+02	0.0000	3378.0	12.40%	44913.7	9.52%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-50	-1.169e+02	0.0000	6257.0	22.97%	90507.4	19.18%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-50	-1.168e+02	0.0000	2516.0	9.24%	31862.6	6.75%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-50	-1.166e+02	0.0000	1818.0	6.67%	21603.9	4.58%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-50	-1.163e+02	0.0000	2109.0	7.74%	25852.3	5.48%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-50	-1.162e+02	0.0000	3701.0	13.58%	49965.8	10.59%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-49	-1.144e+02	0.0000	4085.0	14.99%	56058.0	11.88%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-49	-1.140e+02	0.0000	1966.0	7.22%	23854.3	5.06%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-48	-1.121e+02	0.0000	2035.0	7.47%	24945.9	5.29%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-47	-1.099e+02	0.0000	2557.0	9.39%	32804.5	6.95%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-47	-1.094e+02	0.0000	1584.0	5.81%	18516.4	3.92%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-46	-1.082e+02	0.0000	2943.0	10.80%	38748.3	8.21%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-46	-1.062e+02	0.0000	1751.0	6.43%	21042.6	4.46%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-45	-1.053e+02	0.0000	3002.0	11.02%	39806.2	8.44%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-45	-1.042e+02	0.0000	2967.0	10.89%	39329.9	8.33%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-44	-1.015e+02	0.0000	2917.0	10.71%	38714.1	8.20%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-43	-1.004e+02	0.0000	1228.0	4.51%	13799.2	2.92%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-43	-9.984e+01	0.0000	1278.0	4.69%	14520.6	3.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-43	-9.970e+01	0.0000	1982.0	7.27%	24703.0	5.24%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-43	-9.924e+01	0.0000	3134.0	11.50%	42179.4	8.94%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-42	-9.897e+01	0.0000	4138.0	15.19%	57889.3	12.27%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-42	-9.815e+01	0.0000	2339.0	8.59%	30105.1	6.38%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-42	-9.803e+01	0.0000	1484.0	5.45%	17511.2	3.71%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-42	-9.785e+01	0.0000	2018.0	7.41%	25320.1	5.37%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-42	-9.733e+01	0.0000	1655.0	6.07%	20009.0	4.24%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-41	-9.625e+01	0.0000	2943.0	10.80%	39407.9	8.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-41	-9.622e+01	0.0000	2028.0	7.44%	25544.6	5.41%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-41	-9.621e+01	0.0000	2111.0	7.75%	26781.7	5.68%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-41	-9.465e+01	0.0000	2410.0	8.85%	31355.8	6.64%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-40	-9.378e+01	0.0000	4638.0	17.02%	66200.0	14.03%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-40	-9.312e+01	0.0000	1734.0	6.36%	21339.8	4.52%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-40	-9.230e+01	0.0000	1869.0	6.86%	23365.9	4.95%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-39	-9.207e+01	0.0000	1678.0	6.16%	20563.3	4.36%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-39	-9.129e+01	0.0000	2038.0	7.48%	25926.8	5.49%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-39	-9.124e+01	0.0000	2068.0	7.59%	26377.6	5.59%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-39	-9.049e+01	0.0000	2761.0	10.13%	36938.7	7.83%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-38	-8.969e+01	0.0000	2291.0	8.41%	29811.9	6.32%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-38	-8.948e+01	0.0000	5198.0	19.08%	75522.7	16.00%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-38	-8.782e+01	0.0000	1827.0	6.71%	22948.7	4.86%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-38	-8.771e+01	0.0000	1181.0	4.33%	13575.6	2.88%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-38	-8.763e+01	0.0000	2539.0	9.32%	33696.9	7.14%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-37	-8.720e+01	0.0000	2591.0	9.51%	34516.9	7.31%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-37	-8.654e+01	0.0000	2373.0	8.71%	31223.3	6.62%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-37	-8.622e+01	0.0000	2206.0	8.10%	28706.8	6.08%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-37	-8.530e+01	0.0000	2244.0	8.24%	29331.0	6.22%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-36	-8.484e+01	0.0000	2028.0	7.44%	26093.3	5.53%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-36	-8.453e+01	0.0000	2063.0	7.57%	26635.3	5.64%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-36	-8.425e+01	0.0000	1459.0	5.36%	17696.3	3.75%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-35	-8.230e+01	0.0000	1508.0	5.54%	18493.6	3.92%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-35	-8.089e+01	0.0000	1480.0	5.43%	18144.4	3.85%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-34	-7.912e+01	0.0000	1040.0	3.82%	11889.3	2.52%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-33	-7.805e+01	0.0000	5404.0	19.84%	79817.2	16.91%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-33	-7.637e+01	0.0000	1469.0	5.39%	18180.5	3.85%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-32	-7.598e+01	0.0000	1711.0	6.28%	21783.1	4.62%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-32	-7.516e+01	0.0000	1438.0	5.28%	17778.4	3.77%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-32	-7.451e+01	0.0000	4310.0	15.82%	62435.0	13.23%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-32	-7.435e+01	0.0000	2221.0	8.15%	29582.0	6.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-32	-7.383e+01	0.0000	3180.0	11.67%	44513.5	9.43%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-31	-7.322e+01	0.0000	1953.0	7.17%	25564.5	5.42%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-31	-7.284e+01	0.0000	2235.0	8.20%	29884.6	6.33%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-31	-7.271e+01	0.0000	1650.0	6.06%	21032.1	4.46%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-31	-7.247e+01	0.0000	2904.0	10.66%	40275.3	8.54%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-30	-6.992e+01	0.0000	777.0	2.85%	8532.9	1.81%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-29	-6.780e+01	0.0000	1316.0	4.83%	16313.4	3.46%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-29	-6.725e+01	0.0000	1571.0	5.77%	20121.1	4.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-29	-6.713e+01	0.0000	1244.0	4.57%	15287.4	3.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-29	-6.689e+01	0.0000	2000.0	7.34%	26631.1	5.64%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-28	-6.524e+01	0.0000	1444.0	5.30%	18325.9	3.88%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-28	-6.508e+01	0.0000	996.0	3.66%	11780.8	2.50%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-27	-6.432e+01	0.0000	2499.0	9.17%	34496.5	7.31%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-27	-6.323e+01	0.0000	1550.0	5.69%	20010.3	4.24%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-27	-6.234e+01	0.0000	1125.0	4.13%	13756.7	2.92%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-26	-6.195e+01	0.0000	1507.0	5.53%	19430.2	4.12%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-26	-6.101e+01	0.0000	815.0	2.99%	9360.0	1.98%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-26	-6.082e+01	0.0000	1255.0	4.61%	15732.2	3.33%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-26	-6.055e+01	0.0000	1477.0	5.42%	19052.8	4.04%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-26	-6.025e+01	0.0000	1161.0	4.26%	14374.9	3.05%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-25	-5.954e+01	0.0000	1596.0	5.86%	20898.6	4.43%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-25	-5.892e+01	0.0000	1167.0	4.28%	14522.2	3.08%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-25	-5.760e+01	0.0000	1703.0	6.25%	22633.0	4.80%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-24	-5.741e+01	0.0000	886.0	3.25%	10502.9	2.23%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-24	-5.687e+01	0.0000	1321.0	4.85%	16903.5	3.58%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-24	-5.610e+01	0.0000	1442.0	5.29%	18758.6	3.98%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-24	-5.556e+01	0.0000	1214.0	4.46%	15374.9	3.26%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-24	-5.550e+01	0.0000	2198.0	8.07%	30398.6	6.44%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-24	-5.545e+01	0.0000	560.0	2.06%	6008.3	1.27%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-23	-5.459e+01	0.0000	584.0	2.14%	6361.8	1.35%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-23	-5.392e+01	0.0000	1366.0	5.01%	17729.9	3.76%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-22	-5.254e+01	0.0000	1315.0	4.83%	17035.6	3.61%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-22	-5.210e+01	0.0000	830.0	3.05%	9909.0	2.10%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-22	-5.197e+01	0.0000	873.0	3.20%	10533.9	2.23%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-21	-5.002e+01	0.0000	649.0	2.38%	7413.1	1.57%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-21	-4.987e+01	0.0000	1182.0	4.34%	15179.8	3.22%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-21	-4.968e+01	0.0000	946.0	3.47%	11694.6	2.48%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-21	-4.886e+01	0.0000	1083.0	3.98%	13754.2	2.91%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-21	-4.858e+01	0.0000	944.0	3.46%	11714.5	2.48%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-20	-4.773e+01	0.0000	885.0	3.25%	10888.5	2.31%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-20	-4.769e+01	0.0000	3557.0	13.06%	52649.8	11.16%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-20	-4.727e+01	0.0000	1112.0	4.08%	14265.3	3.02%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-20	-4.718e+01	0.0000	1267.0	4.65%	16599.0	3.52%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-20	-4.680e+01	0.0000	864.0	3.17%	10622.5	2.25%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-19	-4.562e+01	0.0000	844.0	3.10%	10382.1	2.20%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-19	-4.460e+01	0.0000	614.0	2.25%	7114.5	1.51%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-19	-4.435e+01	0.0000	1462.0	5.37%	19734.9	4.18%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-18	-4.298e+01	0.0000	833.0	3.06%	10339.6	2.19%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-18	-4.169e+01	0.0000	1003.0	3.68%	12921.2	2.74%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-17	-4.083e+01	0.0000	467.0	1.71%	5188.5	1.10%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-17	-4.069e+01	0.0000	1325.0	4.86%	17858.3	3.78%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.061e+01	0.0000	841.0	3.09%	10566.4	2.24%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-17	-4.006e+01	0.0000	1059.0	3.89%	13849.9	2.94%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-17	-3.915e+01	0.0000	1322.0	4.85%	17908.1	3.80%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-16	-3.896e+01	0.0000	1094.0	4.02%	14439.7	3.06%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-16	-3.879e+01	0.0000	4348.0	15.96%	66493.4	14.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-16	-3.867e+01	0.0000	913.0	3.35%	11731.4	2.49%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-16	-3.863e+01	0.0000	928.0	3.41%	11957.9	2.53%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-16	-3.851e+01	0.0000	663.0	2.43%	8055.0	1.71%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-16	-3.769e+01	0.0000	1094.0	4.02%	14513.0	3.08%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-16	-3.748e+01	0.0000	629.0	2.31%	7607.0	1.61%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-16	-3.726e+01	0.0000	838.0	3.08%	10684.9	2.26%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-15	-3.673e+01	0.0000	749.0	2.75%	9392.1	1.99%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-15	-3.614e+01	0.0000	1215.0	4.46%	16454.3	3.49%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-15	-3.503e+01	0.0000	613.0	2.25%	7478.4	1.58%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-14	-3.403e+01	0.0000	546.0	2.00%	6551.7	1.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.378e+01	0.0000	686.0	2.52%	8602.6	1.82%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-14	-3.269e+01	0.0000	933.0	3.42%	12356.4	2.62%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-13	-3.090e+01	0.0000	754.0	2.77%	9756.8	2.07%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-13	-3.068e+01	0.0000	647.0	2.37%	8174.3	1.73%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-13	-3.047e+01	0.0000	659.0	2.42%	8362.1	1.77%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-13	-3.015e+01	0.0000	355.0	1.30%	3989.9	0.85%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-12	-2.925e+01	0.0000	1151.0	4.22%	15921.9	3.37%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-12	-2.857e+01	0.0000	605.0	2.22%	7655.8	1.62%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-12	-2.802e+01	0.0000	477.0	1.75%	5804.5	1.23%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-12	-2.802e+01	0.0000	477.0	1.75%	5804.5	1.23%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-12	-2.792e+01	0.0000	413.0	1.52%	4887.4	1.04%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-11	-2.684e+01	0.0000	513.0	1.88%	6381.6	1.35%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-11	-2.641e+01	0.0000	764.0	2.80%	10156.1	2.15%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-10	-2.356e+01	0.0000	329.0	1.21%	3858.6	0.82%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-10	-2.311e+01	0.0000	504.0	1.85%	6426.7	1.36%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.295e+01	0.0000	514.0	1.89%	6583.1	1.40%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-9	-2.207e+01	0.0000	670.0	2.46%	8984.5	1.90%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-9	-2.074e+01	0.0000	633.0	2.32%	8501.6	1.80%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-8	-2.056e+01	0.0000	589.0	2.16%	7842.7	1.66%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-8	-2.025e+01	0.0000	349.0	1.28%	4280.0	0.91%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-8	-2.010e+01	0.0000	446.0	1.64%	5715.8	1.21%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-8	-1.981e+01	0.0000	342.0	1.26%	4197.8	0.89%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-8	-1.944e+01	0.0000	803.0	2.95%	11210.3	2.38%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-8	-1.882e+01	0.0000	412.0	1.51%	5275.0	1.12%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-7	-1.809e+01	0.0000	1681.0	6.17%	25340.3	5.37%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-7	-1.804e+01	0.0000	507.0	1.86%	6745.0	1.43%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-7	-1.733e+01	0.0000	120.0	0.44%	1184.2	0.25%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-7	-1.682e+01	0.0000	664.0	2.44%	9237.8	1.96%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-7	-1.652e+01	0.0000	482.0	1.77%	6455.9	1.37%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-7	-1.615e+01	0.0000	311.0	1.14%	3909.8	0.83%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.483e+01	0.0000	300.0	1.10%	3810.0	0.81%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-6	-1.480e+01	0.0000	341.0	1.25%	4422.6	0.94%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-5	-1.301e+01	0.0000	119.0	0.44%	1286.3	0.27%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-5	-1.293e+01	0.0000	205.0	0.75%	2503.6	0.53%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-5	-1.266e+01	0.0000	135.0	0.50%	1517.1	0.32%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-5	-1.231e+01	0.0000	149.0	0.55%	1725.5	0.37%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.230e+01	0.0000	237.0	0.87%	3000.7	0.64%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-5	-1.216e+01	0.0000	291.0	1.07%	3814.0	0.81%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-4	-1.110e+01	0.0000	748.0	2.75%	11043.0	2.34%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-4	-1.069e+01	0.0000	175.0	0.64%	2163.9	0.46%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-1.058e+01	0.0000	239.0	0.88%	3118.0	0.66%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-4	-1.014e+01	0.0000	337.0	1.24%	4637.0	0.98%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-4	-9.743e+00	0.0001	413.0	1.52%	5849.0	1.24%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-8.638e+00	0.0002	94.0	0.35%	1080.4	0.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-8.252e+00	0.0003	708.0	2.60%	10701.9	2.27%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-3	-8.128e+00	0.0003	520.0	1.91%	7685.4	1.63%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-3	-8.074e+00	0.0003	334.0	1.23%	4739.2	1.00%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-3	-7.895e+00	0.0004	299.0	1.10%	4205.4	0.89%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-2	-5.605e+00	0.0039	56.0	0.21%	649.7	0.14%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-1	-4.551e+00	0.0111	54.0	0.20%	659.2	0.14%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e-1	-4.194e+00	0.0158	14.0	0.05%	120.2	0.03%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-3.445e+00	0.0333	36.0	0.13%	440.2	0.09%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.940e+00	0.0550	32.0	0.12%	401.3	0.09%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.919e+00	0.0560	27244.0	100.00%	471823.7	99.99%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-1	-2.560e+00	0.0800	41.0	0.15%	554.2	0.12%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-2.449e+00	0.0891	54.0	0.20%	762.2	0.16%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.908e+00	0.1526	27244.0	100.00%	471841.5	99.99%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.750e+00	0.1783	102.0	0.37%	1598.0	0.34%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.459e+00	0.2381	33.0	0.12%	494.2	0.10%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.170e+00	0.3169	369.0	1.35%	6218.4	1.32%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.044e+00	0.3586	107.0	0.39%	1779.0	0.38%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-4.978e-01	0.6174	51.0	0.19%	912.5	0.19%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.684e-01	0.8561	27244.0	100.00%	471872.7	100.00%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.369e-01	0.8812	27242.0	99.99%	471854.0	100.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	3871.0	14.21%	153186.5	32.46%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	2494.0	9.15%	127930.8	27.11%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	167.0	0.61%	13611.8	2.88%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	27244.0	100.00%	471875.4	100.00%