Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 28258)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 466524)	% of Background Sequences with Motif
SeqBias: CA-repeat	CACACACACA	1e-445	-1.027e+03	0.0000	24861.0	87.98%	360156.8	77.20%
SeqBias: GA-repeat	GAGAGAGAGA	1e-437	-1.008e+03	0.0000	27017.0	95.62%	409270.4	87.73%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-423	-9.751e+02	0.0000	20793.0	73.59%	283521.5	60.77%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-396	-9.139e+02	0.0000	19439.0	68.80%	261499.9	56.05%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-393	-9.071e+02	0.0000	21398.0	75.73%	296755.7	63.61%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-371	-8.544e+02	0.0000	19309.0	68.34%	261272.5	56.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-370	-8.525e+02	0.0000	17323.0	61.31%	227375.1	48.74%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-357	-8.225e+02	0.0000	27152.0	96.09%	417102.8	89.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-355	-8.176e+02	0.0000	12707.0	44.97%	154184.0	33.05%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-354	-8.168e+02	0.0000	18098.0	64.05%	241737.4	51.82%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-338	-7.799e+02	0.0000	12950.0	45.83%	159205.6	34.13%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-332	-7.647e+02	0.0000	22889.0	81.01%	329353.8	70.60%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-327	-7.537e+02	0.0000	15184.0	53.74%	195624.9	41.93%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-327	-7.537e+02	0.0000	15382.0	54.44%	198839.2	42.62%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-319	-7.346e+02	0.0000	18325.0	64.85%	248624.6	53.29%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-318	-7.340e+02	0.0000	11776.0	41.68%	142633.3	30.57%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-311	-7.179e+02	0.0000	14662.0	51.89%	188502.5	40.41%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-304	-7.011e+02	0.0000	15471.0	54.75%	202233.8	43.35%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-300	-6.920e+02	0.0000	17048.0	60.33%	228643.8	49.01%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-297	-6.845e+02	0.0000	12317.0	43.59%	152679.0	32.73%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-281	-6.492e+02	0.0000	14507.0	51.34%	188599.3	40.43%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-278	-6.419e+02	0.0000	14609.0	51.70%	190529.3	40.84%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-276	-6.364e+02	0.0000	16728.0	59.20%	225486.4	48.33%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-276	-6.363e+02	0.0000	13181.0	46.65%	167966.7	36.00%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-276	-6.356e+02	0.0000	10462.0	37.03%	126052.2	27.02%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-270	-6.224e+02	0.0000	11873.0	42.02%	148063.0	31.74%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-268	-6.172e+02	0.0000	19338.0	68.44%	270708.5	58.03%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-263	-6.060e+02	0.0000	9571.0	33.87%	113739.8	24.38%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-262	-6.034e+02	0.0000	10074.0	35.65%	121342.3	26.01%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-260	-6.006e+02	0.0000	12186.0	43.13%	153740.8	32.95%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-259	-5.971e+02	0.0000	15623.0	55.29%	208818.1	44.76%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-255	-5.890e+02	0.0000	11200.0	39.64%	138945.3	29.78%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-255	-5.890e+02	0.0000	12900.0	45.65%	165367.3	35.45%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-252	-5.820e+02	0.0000	8651.0	30.62%	100980.8	21.65%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-246	-5.687e+02	0.0000	13842.0	48.99%	181139.5	38.83%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-244	-5.628e+02	0.0000	16748.0	59.27%	228876.5	49.06%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-243	-5.607e+02	0.0000	10924.0	38.66%	135787.3	29.11%
SeqBias: A/T bias	WWWWWWWWWW	1e-241	-5.572e+02	0.0000	25127.0	88.93%	380309.6	81.52%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-238	-5.499e+02	0.0000	10359.0	36.66%	127586.9	27.35%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-233	-5.388e+02	0.0000	9158.0	32.41%	109957.6	23.57%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-233	-5.380e+02	0.0000	11053.0	39.12%	138637.4	29.72%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-232	-5.354e+02	0.0000	13698.0	48.48%	180220.4	38.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-229	-5.284e+02	0.0000	12800.0	45.30%	166243.2	35.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-222	-5.131e+02	0.0000	10101.0	35.75%	125077.1	26.81%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-221	-5.092e+02	0.0000	9687.0	34.28%	118969.9	25.50%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-218	-5.024e+02	0.0000	9782.0	34.62%	120663.3	25.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-217	-4.999e+02	0.0000	11002.0	38.94%	139372.0	29.87%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-216	-4.996e+02	0.0000	10525.0	37.25%	132064.3	28.31%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-215	-4.972e+02	0.0000	12928.0	45.75%	169594.1	36.35%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-213	-4.922e+02	0.0000	8460.0	29.94%	101300.4	21.71%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-212	-4.896e+02	0.0000	12104.0	42.84%	156929.6	33.64%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-210	-4.846e+02	0.0000	9572.0	33.88%	118181.2	25.33%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-206	-4.754e+02	0.0000	8094.0	28.65%	96524.6	20.69%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-204	-4.715e+02	0.0000	10849.0	38.40%	138183.1	29.62%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-204	-4.707e+02	0.0000	13363.0	47.29%	177683.7	38.09%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-200	-4.623e+02	0.0000	7976.0	28.23%	95267.6	20.42%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-199	-4.602e+02	0.0000	10982.0	38.87%	140713.4	30.16%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-198	-4.580e+02	0.0000	9096.0	32.19%	112063.7	24.02%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-198	-4.563e+02	0.0000	14367.0	50.85%	194496.4	41.69%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-198	-4.562e+02	0.0000	7345.0	25.99%	86274.7	18.49%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-192	-4.427e+02	0.0000	7917.0	28.02%	95126.8	20.39%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-187	-4.306e+02	0.0000	7369.0	26.08%	87546.7	18.77%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-186	-4.305e+02	0.0000	9676.0	34.24%	121942.9	26.14%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-186	-4.298e+02	0.0000	9004.0	31.87%	111811.0	23.97%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-186	-4.285e+02	0.0000	6684.0	23.66%	77701.6	16.66%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-185	-4.270e+02	0.0000	11398.0	40.34%	148629.8	31.86%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-177	-4.093e+02	0.0000	7734.0	27.37%	93705.7	20.09%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-176	-4.072e+02	0.0000	10580.0	37.44%	136815.9	29.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-175	-4.037e+02	0.0000	10317.0	36.51%	132913.3	28.49%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-174	-4.028e+02	0.0000	10104.0	35.76%	129676.1	27.80%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-172	-3.962e+02	0.0000	9223.0	32.64%	116522.0	24.98%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-170	-3.918e+02	0.0000	8527.0	30.18%	106208.7	22.77%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-168	-3.874e+02	0.0000	8201.0	29.02%	101512.7	21.76%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-168	-3.871e+02	0.0000	6611.0	23.40%	78140.9	16.75%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-164	-3.788e+02	0.0000	8376.0	29.64%	104490.0	22.40%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-162	-3.734e+02	0.0000	10751.0	38.05%	141022.1	30.23%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-160	-3.693e+02	0.0000	8456.0	29.93%	106096.6	22.74%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-160	-3.687e+02	0.0000	5809.0	20.56%	67283.4	14.42%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-156	-3.593e+02	0.0000	7389.0	26.15%	90607.4	19.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-155	-3.576e+02	0.0000	11291.0	39.96%	150221.1	32.20%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-153	-3.535e+02	0.0000	7489.0	26.50%	92324.2	19.79%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-151	-3.498e+02	0.0000	6872.0	24.32%	83379.0	17.87%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-150	-3.474e+02	0.0000	7986.0	28.26%	99990.1	21.43%
SeqBias: CG-repeat	CGCGCGCGCG	1e-150	-3.455e+02	0.0000	16046.0	56.79%	227624.4	48.79%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-149	-3.447e+02	0.0000	6152.0	21.77%	73095.5	15.67%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-149	-3.446e+02	0.0000	7651.0	27.08%	95109.2	20.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-149	-3.437e+02	0.0000	6974.0	24.68%	85122.1	18.25%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-149	-3.436e+02	0.0000	10630.0	37.62%	140583.9	30.13%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-148	-3.426e+02	0.0000	7360.0	26.05%	90868.0	19.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-147	-3.401e+02	0.0000	9013.0	31.90%	115833.8	24.83%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-145	-3.349e+02	0.0000	7563.0	26.77%	94214.6	20.20%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-142	-3.287e+02	0.0000	8110.0	28.70%	102681.3	22.01%
SeqBias: TA-repeat	TATATATATA	1e-142	-3.275e+02	0.0000	11545.0	40.86%	155745.8	33.38%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-141	-3.257e+02	0.0000	6969.0	24.66%	85799.0	18.39%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-140	-3.231e+02	0.0000	6281.0	22.23%	75814.1	16.25%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-138	-3.195e+02	0.0000	4967.0	17.58%	57084.0	12.24%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-138	-3.189e+02	0.0000	5198.0	18.40%	60379.6	12.94%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-135	-3.126e+02	0.0000	5145.0	18.21%	59856.6	12.83%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-133	-3.068e+02	0.0000	5776.0	20.44%	69132.0	14.82%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-132	-3.044e+02	0.0000	6156.0	21.79%	74750.5	16.02%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-129	-2.982e+02	0.0000	5881.0	20.81%	70996.4	15.22%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-129	-2.975e+02	0.0000	4570.0	16.17%	52272.7	11.20%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-128	-2.963e+02	0.0000	4561.0	16.14%	52187.1	11.19%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-127	-2.927e+02	0.0000	5614.0	19.87%	67350.7	14.44%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-126	-2.907e+02	0.0000	9935.0	35.16%	132468.6	28.39%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-124	-2.869e+02	0.0000	7268.0	25.72%	91956.5	19.71%
Tal1	CATCTG	1e-124	-2.864e+02	0.0000	8195.0	29.00%	105953.3	22.71%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-121	-2.801e+02	0.0000	4785.0	16.93%	55946.6	11.99%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-121	-2.797e+02	0.0000	5127.0	18.14%	60847.0	13.04%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-118	-2.734e+02	0.0000	4114.0	14.56%	46734.2	10.02%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-118	-2.732e+02	0.0000	6072.0	21.49%	74839.2	16.04%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-117	-2.710e+02	0.0000	6586.0	23.31%	82526.9	17.69%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-115	-2.664e+02	0.0000	7471.0	26.44%	95979.1	20.57%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-113	-2.623e+02	0.0000	6233.0	22.06%	77697.6	16.65%
SeqBias: CG bias	SSSSSSSSSS	1e-113	-2.609e+02	0.0000	28007.0	99.12%	453241.4	97.15%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-111	-2.578e+02	0.0000	4806.0	17.01%	57109.8	12.24%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-110	-2.536e+02	0.0000	4785.0	16.93%	56979.3	12.21%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-109	-2.525e+02	0.0000	4937.0	17.47%	59208.2	12.69%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-109	-2.516e+02	0.0000	5610.0	19.85%	69013.9	14.79%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-105	-2.436e+02	0.0000	6873.0	24.32%	88112.1	18.89%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-105	-2.434e+02	0.0000	6872.0	24.32%	88106.1	18.89%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-105	-2.424e+02	0.0000	6120.0	21.66%	76942.4	16.49%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-104	-2.406e+02	0.0000	5365.0	18.99%	65919.4	14.13%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-104	-2.397e+02	0.0000	4838.0	17.12%	58307.2	12.50%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-103	-2.381e+02	0.0000	8674.0	30.70%	115811.8	24.82%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-102	-2.362e+02	0.0000	4967.0	17.58%	60319.3	12.93%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-102	-2.360e+02	0.0000	5642.0	19.97%	70182.8	15.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-101	-2.331e+02	0.0000	4900.0	17.34%	59483.3	12.75%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-99	-2.294e+02	0.0000	5074.0	17.96%	62169.3	13.33%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-98	-2.267e+02	0.0000	4840.0	17.13%	58889.8	12.62%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-97	-2.234e+02	0.0000	6301.0	22.30%	80554.2	17.27%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-96	-2.226e+02	0.0000	4151.0	14.69%	49158.7	10.54%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-95	-2.189e+02	0.0000	4908.0	17.37%	60217.6	12.91%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-94	-2.183e+02	0.0000	7652.0	27.08%	101230.5	21.70%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-94	-2.180e+02	0.0000	3940.0	13.94%	46344.7	9.93%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-93	-2.153e+02	0.0000	2782.0	9.85%	30347.0	6.50%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-93	-2.149e+02	0.0000	4288.0	15.18%	51432.9	11.02%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-92	-2.135e+02	0.0000	4270.0	15.11%	51231.6	10.98%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-92	-2.134e+02	0.0000	4099.0	14.51%	48788.5	10.46%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-92	-2.130e+02	0.0000	4318.0	15.28%	51943.7	11.13%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-92	-2.124e+02	0.0000	4781.0	16.92%	58660.7	12.57%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-91	-2.110e+02	0.0000	5642.0	19.97%	71360.1	15.30%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-91	-2.096e+02	0.0000	3590.0	12.71%	41724.8	8.94%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-90	-2.087e+02	0.0000	6648.0	23.53%	86520.7	18.55%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-90	-2.080e+02	0.0000	6050.0	21.41%	77579.0	16.63%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-90	-2.078e+02	0.0000	4834.0	17.11%	59638.1	12.78%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-90	-2.075e+02	0.0000	4029.0	14.26%	48032.1	10.30%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-89	-2.060e+02	0.0000	4851.0	17.17%	59968.2	12.85%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-88	-2.045e+02	0.0000	3358.0	11.88%	38662.6	8.29%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-88	-2.032e+02	0.0000	3504.0	12.40%	40760.1	8.74%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-87	-2.004e+02	0.0000	4099.0	14.51%	49330.3	10.57%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-86	-1.989e+02	0.0000	2769.0	9.80%	30710.7	6.58%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-86	-1.986e+02	0.0000	5035.0	17.82%	63008.6	13.51%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-85	-1.962e+02	0.0000	3408.0	12.06%	39678.9	8.51%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-85	-1.961e+02	0.0000	3520.0	12.46%	41261.8	8.84%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-85	-1.960e+02	0.0000	5139.0	18.19%	64660.4	13.86%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-85	-1.958e+02	0.0000	5095.0	18.03%	64024.3	13.72%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-82	-1.908e+02	0.0000	4069.0	14.40%	49310.7	10.57%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-82	-1.905e+02	0.0000	3901.0	13.81%	46911.1	10.06%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-81	-1.876e+02	0.0000	3937.0	13.93%	47553.5	10.19%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-81	-1.870e+02	0.0000	4231.0	14.97%	51819.7	11.11%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-81	-1.870e+02	0.0000	3476.0	12.30%	41003.1	8.79%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-81	-1.866e+02	0.0000	6063.0	21.46%	78901.5	16.91%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-80	-1.851e+02	0.0000	3622.0	12.82%	43151.4	9.25%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-79	-1.835e+02	0.0000	5247.0	18.57%	66879.9	14.34%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-79	-1.823e+02	0.0000	4852.0	17.17%	61108.7	13.10%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-76	-1.772e+02	0.0000	5334.0	18.88%	68500.9	14.68%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-76	-1.766e+02	0.0000	4649.0	16.45%	58403.1	12.52%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-76	-1.764e+02	0.0000	2403.0	8.50%	26474.5	5.67%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-76	-1.754e+02	0.0000	2990.0	10.58%	34617.7	7.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-75	-1.743e+02	0.0000	3059.0	10.83%	35625.4	7.64%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-74	-1.727e+02	0.0000	3456.0	12.23%	41307.5	8.85%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-73	-1.696e+02	0.0000	3134.0	11.09%	36868.2	7.90%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-73	-1.692e+02	0.0000	2876.0	10.18%	33258.1	7.13%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-73	-1.688e+02	0.0000	6622.0	23.44%	88376.6	18.94%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-73	-1.686e+02	0.0000	2652.0	9.39%	30167.8	6.47%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-73	-1.685e+02	0.0000	5047.0	17.86%	64690.7	13.87%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-72	-1.674e+02	0.0000	5053.0	17.88%	64838.8	13.90%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-72	-1.672e+02	0.0000	3110.0	11.01%	36624.8	7.85%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-71	-1.657e+02	0.0000	3677.0	13.01%	44775.5	9.60%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-70	-1.633e+02	0.0000	2380.0	8.42%	26608.2	5.70%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-70	-1.625e+02	0.0000	2989.0	10.58%	35108.4	7.53%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-70	-1.619e+02	0.0000	28165.0	99.68%	460137.6	98.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-69	-1.604e+02	0.0000	3182.0	11.26%	37924.5	8.13%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-69	-1.603e+02	0.0000	3178.0	11.25%	37872.4	8.12%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-69	-1.597e+02	0.0000	3334.0	11.80%	40121.9	8.60%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-68	-1.577e+02	0.0000	2804.0	9.92%	32698.7	7.01%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-67	-1.564e+02	0.0000	2969.0	10.51%	35076.2	7.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-67	-1.554e+02	0.0000	3472.0	12.29%	42291.5	9.07%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-66	-1.536e+02	0.0000	2785.0	9.86%	32597.5	6.99%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-66	-1.523e+02	0.0000	3333.0	11.80%	40435.0	8.67%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-65	-1.498e+02	0.0000	2299.0	8.14%	25978.1	5.57%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-64	-1.486e+02	0.0000	3092.0	10.94%	37149.0	7.96%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-64	-1.485e+02	0.0000	3742.0	13.24%	46518.1	9.97%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-64	-1.479e+02	0.0000	3092.0	10.94%	37181.2	7.97%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-63	-1.471e+02	0.0000	2816.0	9.97%	33295.8	7.14%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-62	-1.436e+02	0.0000	4022.0	14.23%	50851.4	10.90%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-61	-1.426e+02	0.0000	2866.0	10.14%	34194.4	7.33%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-61	-1.406e+02	0.0000	4687.0	16.59%	60851.0	13.04%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-60	-1.401e+02	0.0000	2844.0	10.07%	33986.3	7.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-59	-1.380e+02	0.0000	2529.0	8.95%	29627.1	6.35%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-59	-1.365e+02	0.0000	2793.0	9.88%	33419.0	7.16%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-58	-1.352e+02	0.0000	4119.0	14.58%	52718.5	11.30%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-57	-1.327e+02	0.0000	2314.0	8.19%	26828.1	5.75%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-57	-1.318e+02	0.0000	2988.0	10.57%	36410.8	7.80%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-57	-1.318e+02	0.0000	5604.0	19.83%	75183.3	16.12%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-56	-1.310e+02	0.0000	1944.0	6.88%	21782.1	4.67%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-56	-1.304e+02	0.0000	2205.0	7.80%	25400.3	5.44%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-56	-1.304e+02	0.0000	3629.0	12.84%	45766.9	9.81%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-56	-1.291e+02	0.0000	3067.0	10.85%	37670.8	8.07%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-55	-1.277e+02	0.0000	3563.0	12.61%	44940.5	9.63%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-55	-1.273e+02	0.0000	3163.0	11.19%	39140.7	8.39%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-54	-1.245e+02	0.0000	1693.0	5.99%	18590.9	3.98%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-53	-1.239e+02	0.0000	3013.0	10.66%	37140.8	7.96%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-52	-1.218e+02	0.0000	2199.0	7.78%	25658.9	5.50%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-52	-1.215e+02	0.0000	1949.0	6.90%	22195.3	4.76%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-52	-1.211e+02	0.0000	2917.0	10.32%	35889.2	7.69%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-52	-1.207e+02	0.0000	2245.0	7.95%	26343.5	5.65%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-51	-1.193e+02	0.0000	1783.0	6.31%	19996.2	4.29%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-50	-1.167e+02	0.0000	1488.0	5.27%	16089.9	3.45%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-50	-1.157e+02	0.0000	2756.0	9.75%	33826.4	7.25%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-49	-1.148e+02	0.0000	4218.0	14.93%	55344.9	11.86%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-49	-1.143e+02	0.0000	5727.0	20.27%	78226.4	16.77%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-49	-1.142e+02	0.0000	1985.0	7.03%	22974.6	4.92%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-49	-1.141e+02	0.0000	2683.0	9.50%	32854.3	7.04%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-49	-1.139e+02	0.0000	2232.0	7.90%	26444.8	5.67%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-49	-1.133e+02	0.0000	2390.0	8.46%	28704.2	6.15%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-48	-1.128e+02	0.0000	1795.0	6.35%	20400.7	4.37%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-48	-1.117e+02	0.0000	1549.0	5.48%	17078.7	3.66%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-48	-1.115e+02	0.0000	1293.0	4.58%	13659.8	2.93%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-48	-1.109e+02	0.0000	2266.0	8.02%	27054.5	5.80%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-48	-1.108e+02	0.0000	1404.0	4.97%	15158.7	3.25%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-47	-1.093e+02	0.0000	2094.0	7.41%	24696.4	5.29%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-47	-1.093e+02	0.0000	2063.0	7.30%	24263.8	5.20%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-46	-1.059e+02	0.0000	4824.0	17.07%	65034.3	13.94%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-45	-1.047e+02	0.0000	2281.0	8.07%	27538.4	5.90%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-45	-1.043e+02	0.0000	2241.0	7.93%	26989.3	5.79%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-44	-1.015e+02	0.0000	2897.0	10.25%	36576.3	7.84%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-44	-1.015e+02	0.0000	1978.0	7.00%	23394.6	5.01%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-43	-9.954e+01	0.0000	1619.0	5.73%	18473.7	3.96%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-43	-9.928e+01	0.0000	2055.0	7.27%	24575.1	5.27%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-42	-9.871e+01	0.0000	2074.0	7.34%	24869.4	5.33%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-42	-9.829e+01	0.0000	1777.0	6.29%	20712.1	4.44%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-42	-9.685e+01	0.0000	2100.0	7.43%	25321.8	5.43%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-41	-9.560e+01	0.0000	2290.0	8.10%	28091.0	6.02%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-40	-9.311e+01	0.0000	1077.0	3.81%	11368.4	2.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-40	-9.248e+01	0.0000	1222.0	4.32%	13319.2	2.85%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-39	-9.177e+01	0.0000	1105.0	3.91%	11781.0	2.53%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-38	-8.826e+01	0.0000	1803.0	6.38%	21498.7	4.61%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-37	-8.730e+01	0.0000	1626.0	5.75%	19054.4	4.08%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-37	-8.658e+01	0.0000	1781.0	6.30%	21261.7	4.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-37	-8.559e+01	0.0000	2207.0	7.81%	27388.0	5.87%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-36	-8.465e+01	0.0000	2119.0	7.50%	26167.2	5.61%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-36	-8.400e+01	0.0000	1671.0	5.91%	19824.2	4.25%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-36	-8.392e+01	0.0000	1097.0	3.88%	11927.4	2.56%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-36	-8.379e+01	0.0000	1763.0	6.24%	21130.2	4.53%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-35	-8.243e+01	0.0000	1525.0	5.40%	17845.8	3.83%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-34	-8.057e+01	0.0000	1411.0	4.99%	16335.8	3.50%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-34	-8.010e+01	0.0000	1434.0	5.08%	16673.8	3.57%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-34	-7.925e+01	0.0000	3044.0	10.77%	40018.0	8.58%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-34	-7.922e+01	0.0000	1276.0	4.52%	14524.4	3.11%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-34	-7.913e+01	0.0000	1497.0	5.30%	17591.7	3.77%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-34	-7.879e+01	0.0000	1773.0	6.27%	21499.7	4.61%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-34	-7.833e+01	0.0000	1394.0	4.93%	16189.1	3.47%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-33	-7.824e+01	0.0000	1230.0	4.35%	13930.1	2.99%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-33	-7.811e+01	0.0000	1506.0	5.33%	17760.1	3.81%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-33	-7.780e+01	0.0000	1726.0	6.11%	20877.9	4.48%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-33	-7.717e+01	0.0000	1467.0	5.19%	17254.2	3.70%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-33	-7.603e+01	0.0000	763.0	2.70%	7766.8	1.66%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-32	-7.530e+01	0.0000	2989.0	10.58%	39449.8	8.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-31	-7.298e+01	0.0000	1801.0	6.37%	22176.6	4.75%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-31	-7.293e+01	0.0000	1440.0	5.10%	17056.6	3.66%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-31	-7.198e+01	0.0000	1474.0	5.22%	17575.3	3.77%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-31	-7.162e+01	0.0000	1187.0	4.20%	13591.7	2.91%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-30	-7.010e+01	0.0000	1529.0	5.41%	18436.7	3.95%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-29	-6.745e+01	0.0000	3771.0	13.35%	51788.3	11.10%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-29	-6.720e+01	0.0000	853.0	3.02%	9216.4	1.98%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-29	-6.681e+01	0.0000	1359.0	4.81%	16184.3	3.47%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-28	-6.608e+01	0.0000	1505.0	5.33%	18282.8	3.92%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-27	-6.328e+01	0.0000	1194.0	4.23%	14024.6	3.01%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-27	-6.319e+01	0.0000	970.0	3.43%	10936.0	2.34%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-27	-6.286e+01	0.0000	1106.0	3.91%	12818.1	2.75%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-27	-6.230e+01	0.0000	1356.0	4.80%	16345.0	3.50%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-26	-6.058e+01	0.0000	1264.0	4.47%	15123.4	3.24%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-25	-5.951e+01	0.0000	1255.0	4.44%	15044.7	3.22%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-25	-5.941e+01	0.0000	2522.0	8.93%	33523.2	7.19%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-25	-5.937e+01	0.0000	4678.0	16.56%	66411.2	14.24%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-25	-5.888e+01	0.0000	944.0	3.34%	10741.9	2.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-25	-5.818e+01	0.0000	1319.0	4.67%	16011.2	3.43%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-24	-5.697e+01	0.0000	952.0	3.37%	10925.8	2.34%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-24	-5.590e+01	0.0000	1402.0	4.96%	17305.7	3.71%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-23	-5.524e+01	0.0000	1148.0	4.06%	13728.5	2.94%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-23	-5.489e+01	0.0000	679.0	2.40%	7300.9	1.56%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-23	-5.415e+01	0.0000	685.0	2.42%	7404.4	1.59%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-23	-5.350e+01	0.0000	2058.0	7.28%	27011.6	5.79%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-22	-5.244e+01	0.0000	1184.0	4.19%	14365.4	3.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-21	-4.953e+01	0.0000	1383.0	4.89%	17361.8	3.72%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-21	-4.940e+01	0.0000	566.0	2.00%	5979.7	1.28%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-20	-4.780e+01	0.0000	872.0	3.09%	10188.6	2.18%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-20	-4.725e+01	0.0000	931.0	3.29%	11035.0	2.37%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-20	-4.718e+01	0.0000	927.0	3.28%	10981.2	2.35%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-20	-4.653e+01	0.0000	1104.0	3.91%	13511.6	2.90%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-19	-4.599e+01	0.0000	871.0	3.08%	10250.6	2.20%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-18	-4.373e+01	0.0000	839.0	2.97%	9900.0	2.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-18	-4.206e+01	0.0000	884.0	3.13%	10605.9	2.27%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.197e+01	0.0000	522.0	1.85%	5633.7	1.21%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.197e+01	0.0000	522.0	1.85%	5633.7	1.21%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-18	-4.160e+01	0.0000	549.0	1.94%	6006.3	1.29%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-18	-4.154e+01	0.0000	1027.0	3.63%	12659.8	2.71%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-17	-4.098e+01	0.0000	793.0	2.81%	9376.8	2.01%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-17	-4.081e+01	0.0000	474.0	1.68%	5034.0	1.08%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-17	-4.025e+01	0.0000	895.0	3.17%	10844.2	2.32%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-17	-4.002e+01	0.0000	1174.0	4.15%	14855.6	3.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-17	-3.980e+01	0.0000	826.0	2.92%	9891.4	2.12%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-17	-3.946e+01	0.0000	843.0	2.98%	10146.7	2.17%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-16	-3.905e+01	0.0000	1421.0	5.03%	18521.1	3.97%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-16	-3.840e+01	0.0000	694.0	2.46%	8107.8	1.74%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-16	-3.820e+01	0.0000	721.0	2.55%	8491.7	1.82%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-16	-3.808e+01	0.0000	516.0	1.83%	5684.2	1.22%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-16	-3.774e+01	0.0000	560.0	1.98%	6291.9	1.35%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-15	-3.663e+01	0.0000	1227.0	4.34%	15822.4	3.39%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-15	-3.567e+01	0.0000	820.0	2.90%	9999.9	2.14%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-15	-3.514e+01	0.0000	564.0	2.00%	6444.1	1.38%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-15	-3.462e+01	0.0000	622.0	2.20%	7266.0	1.56%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-14	-3.427e+01	0.0000	878.0	3.11%	10896.8	2.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-14	-3.371e+01	0.0000	724.0	2.56%	8733.4	1.87%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-14	-3.313e+01	0.0000	749.0	2.65%	9114.9	1.95%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-13	-3.162e+01	0.0000	474.0	1.68%	5348.4	1.15%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-13	-3.146e+01	0.0000	1768.0	6.26%	24240.2	5.20%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-13	-3.131e+01	0.0000	844.0	2.99%	10563.8	2.26%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-12	-2.914e+01	0.0000	761.0	2.69%	9485.1	2.03%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-12	-2.766e+01	0.0000	1009.0	3.57%	13178.3	2.82%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-11	-2.615e+01	0.0000	431.0	1.53%	4970.7	1.07%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-11	-2.591e+01	0.0000	716.0	2.53%	9010.3	1.93%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-11	-2.568e+01	0.0000	542.0	1.92%	6538.6	1.40%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-11	-2.566e+01	0.0000	648.0	2.29%	8046.2	1.72%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-10	-2.529e+01	0.0000	555.0	1.96%	6740.4	1.44%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-10	-2.523e+01	0.0000	501.0	1.77%	5982.6	1.28%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-10	-2.517e+01	0.0000	555.0	1.96%	6746.9	1.45%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-10	-2.480e+01	0.0000	576.0	2.04%	7062.3	1.51%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-10	-2.442e+01	0.0000	389.0	1.38%	4461.1	0.96%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.234e+01	0.0000	479.0	1.70%	5805.3	1.24%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-9	-2.171e+01	0.0000	726.0	2.57%	9398.2	2.01%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-8	-2.056e+01	0.0000	368.0	1.30%	4328.3	0.93%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-8	-1.916e+01	0.0000	562.0	1.99%	7160.0	1.53%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-8	-1.903e+01	0.0000	281.0	0.99%	3190.8	0.68%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-8	-1.856e+01	0.0000	840.0	2.97%	11295.4	2.42%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-8	-1.844e+01	0.0000	304.0	1.08%	3529.9	0.76%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-7	-1.805e+01	0.0000	340.0	1.20%	4046.1	0.87%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-7	-1.787e+01	0.0000	796.0	2.82%	10689.3	2.29%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-7	-1.710e+01	0.0000	315.0	1.11%	3738.7	0.80%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.602e+01	0.0000	307.0	1.09%	3674.3	0.79%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.579e+01	0.0000	306.0	1.08%	3670.4	0.79%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-6	-1.492e+01	0.0000	112.0	0.40%	1086.0	0.23%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-6	-1.487e+01	0.0000	327.0	1.16%	4010.7	0.86%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-6	-1.382e+01	0.0000	327.0	1.16%	4063.7	0.87%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-5	-1.363e+01	0.0000	311.0	1.10%	3844.4	0.82%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-4	-1.148e+01	0.0000	216.0	0.76%	2600.3	0.56%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-4	-1.122e+01	0.0000	236.0	0.84%	2895.7	0.62%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-4	-1.094e+01	0.0000	383.0	1.36%	5044.4	1.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-4	-9.556e+00	0.0001	90.0	0.32%	947.8	0.20%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-4	-9.459e+00	0.0001	317.0	1.12%	4168.7	0.89%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-3	-8.848e+00	0.0002	289.0	1.02%	3795.5	0.81%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-3	-7.141e+00	0.0008	170.0	0.60%	2158.8	0.46%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-2	-6.834e+00	0.0011	63.0	0.22%	673.9	0.14%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.382e+00	0.0018	106.0	0.38%	1280.6	0.27%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-5.590e+00	0.0039	122.0	0.43%	1547.6	0.33%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-2	-5.349e+00	0.0050	131.0	0.46%	1691.6	0.36%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-4.460e+00	0.0121	125.0	0.44%	1656.6	0.36%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-1	-4.394e+00	0.0129	52.0	0.18%	606.1	0.13%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-4.275e+00	0.0145	39.0	0.14%	432.8	0.09%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-1	-3.756e+00	0.0243	48.0	0.17%	575.4	0.12%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.986e+00	0.0524	100.0	0.35%	1382.2	0.30%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-2.707e+00	0.0690	31.0	0.11%	377.7	0.08%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.529e+00	0.0823	28256.0	100.00%	466480.6	99.99%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.272e+00	0.1061	51.0	0.18%	692.8	0.15%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.235e+00	0.1099	28256.0	100.00%	466485.9	99.99%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.119e+00	0.1230	11.0	0.04%	118.5	0.03%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.470e+00	0.2347	28256.0	100.00%	466499.0	99.99%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.101e+00	0.3386	31.0	0.11%	466.7	0.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.074e+00	0.3471	61.0	0.22%	948.1	0.20%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.219e-01	0.6644	334.0	1.18%	5633.7	1.21%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.764e-01	0.8470	28256.0	100.00%	466520.3	100.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	3200.0	11.33%	120222.7	25.77%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	28256.0	100.00%	466523.1	100.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	4622.0	16.36%	146891.3	31.49%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	381.0	1.35%	12670.0	2.72%