Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 31584)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 474754)	% of Background Sequences with Motif
SeqBias: GA-repeat	GAGAGAGAGA	1e-602	-1.387e+03	0.0000	30419.0	96.31%	416264.0	87.68%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-577	-1.330e+03	0.0000	25791.0	81.66%	325067.9	68.47%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-561	-1.293e+03	0.0000	24453.0	77.42%	302831.6	63.79%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-553	-1.274e+03	0.0000	23503.0	74.41%	287402.8	60.54%
SeqBias: CA-repeat	CACACACACA	1e-538	-1.239e+03	0.0000	28674.0	90.79%	381340.6	80.32%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-523	-1.205e+03	0.0000	23854.0	75.53%	295182.5	62.17%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-516	-1.189e+03	0.0000	19348.0	61.26%	223915.1	47.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-501	-1.154e+03	0.0000	16504.0	52.25%	182676.0	38.48%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-490	-1.130e+03	0.0000	19625.0	62.14%	229815.3	48.41%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-456	-1.051e+03	0.0000	14227.0	45.04%	153125.1	32.25%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-447	-1.030e+03	0.0000	13401.0	42.43%	142256.8	29.96%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-439	-1.013e+03	0.0000	20308.0	64.30%	243870.8	51.37%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-437	-1.008e+03	0.0000	16129.0	51.07%	181416.0	38.21%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-419	-9.658e+02	0.0000	20778.0	65.79%	252675.6	53.22%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-413	-9.523e+02	0.0000	20408.0	64.61%	247332.9	52.10%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-402	-9.263e+02	0.0000	16420.0	51.99%	188119.7	39.62%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-395	-9.095e+02	0.0000	16443.0	52.06%	188980.8	39.80%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-392	-9.047e+02	0.0000	25100.0	79.47%	325127.6	68.48%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-390	-8.995e+02	0.0000	14743.0	46.68%	164802.9	34.71%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-390	-8.993e+02	0.0000	12017.0	38.05%	126923.0	26.73%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-387	-8.933e+02	0.0000	27794.0	88.00%	373342.1	78.64%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-380	-8.768e+02	0.0000	13730.0	43.47%	151198.8	31.85%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-379	-8.750e+02	0.0000	11975.0	37.91%	127039.6	26.76%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-372	-8.578e+02	0.0000	13946.0	44.16%	154806.9	32.61%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-368	-8.476e+02	0.0000	13114.0	41.52%	143486.3	30.22%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-357	-8.240e+02	0.0000	10769.0	34.10%	112232.3	23.64%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-348	-8.017e+02	0.0000	14079.0	44.58%	158438.6	33.37%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-341	-7.867e+02	0.0000	13963.0	44.21%	157279.7	33.13%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-341	-7.864e+02	0.0000	9917.0	31.40%	101977.2	21.48%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-341	-7.858e+02	0.0000	12645.0	40.04%	138870.9	29.25%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-341	-7.853e+02	0.0000	17142.0	54.27%	203344.9	42.83%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-339	-7.818e+02	0.0000	16607.0	52.58%	195565.1	41.19%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-333	-7.687e+02	0.0000	20870.0	66.08%	260719.4	54.92%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-332	-7.650e+02	0.0000	13920.0	44.07%	157375.2	33.15%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-330	-7.613e+02	0.0000	9446.0	29.91%	96481.4	20.32%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-326	-7.508e+02	0.0000	13788.0	43.66%	155973.6	32.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-318	-7.325e+02	0.0000	16347.0	51.76%	193458.6	40.75%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-316	-7.287e+02	0.0000	11848.0	37.51%	129668.9	27.31%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-312	-7.204e+02	0.0000	12416.0	39.31%	137767.8	29.02%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-312	-7.200e+02	0.0000	14501.0	45.91%	167145.4	35.21%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-302	-6.976e+02	0.0000	10730.0	33.97%	115410.0	24.31%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-302	-6.958e+02	0.0000	9351.0	29.61%	97071.6	20.45%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-300	-6.923e+02	0.0000	10235.0	32.41%	108913.8	22.94%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-300	-6.910e+02	0.0000	12659.0	40.08%	142108.0	29.93%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-295	-6.793e+02	0.0000	15822.0	50.09%	187677.4	39.53%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-291	-6.701e+02	0.0000	11619.0	36.79%	128399.9	27.04%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-290	-6.691e+02	0.0000	12340.0	39.07%	138399.6	29.15%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-285	-6.575e+02	0.0000	11846.0	37.51%	131940.6	27.79%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-282	-6.506e+02	0.0000	17983.0	56.94%	220780.2	46.50%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-276	-6.371e+02	0.0000	10815.0	34.24%	118479.7	24.96%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-275	-6.340e+02	0.0000	14926.0	47.26%	176323.8	37.14%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-274	-6.323e+02	0.0000	12000.0	37.99%	134923.6	28.42%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-270	-6.228e+02	0.0000	11420.0	36.16%	127233.8	26.80%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-267	-6.154e+02	0.0000	12578.0	39.82%	143572.9	30.24%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-265	-6.112e+02	0.0000	20376.0	64.51%	258917.4	54.54%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-264	-6.096e+02	0.0000	9269.0	29.35%	98558.1	20.76%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-262	-6.041e+02	0.0000	14019.0	44.39%	164393.0	34.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-260	-5.991e+02	0.0000	12564.0	39.78%	143960.0	30.32%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-259	-5.964e+02	0.0000	11056.0	35.01%	123128.1	25.93%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-257	-5.939e+02	0.0000	9975.0	31.58%	108508.8	22.86%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-257	-5.934e+02	0.0000	7676.0	24.30%	78180.7	16.47%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-257	-5.930e+02	0.0000	8365.0	26.48%	87142.4	18.35%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-257	-5.924e+02	0.0000	8594.0	27.21%	90161.7	18.99%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-246	-5.684e+02	0.0000	9829.0	31.12%	107379.9	22.62%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-244	-5.621e+02	0.0000	7281.0	23.05%	73993.5	15.59%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-243	-5.602e+02	0.0000	9624.0	30.47%	104888.7	22.09%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-242	-5.585e+02	0.0000	13419.0	42.49%	157552.1	33.19%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-242	-5.573e+02	0.0000	11166.0	35.35%	126007.0	26.54%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-229	-5.281e+02	0.0000	9953.0	31.51%	110429.6	23.26%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-228	-5.261e+02	0.0000	6657.0	21.08%	67040.0	14.12%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-224	-5.181e+02	0.0000	7317.0	23.17%	75748.2	15.95%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-224	-5.172e+02	0.0000	15754.0	49.88%	192996.0	40.65%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-222	-5.120e+02	0.0000	10754.0	34.05%	121967.1	25.69%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-218	-5.033e+02	0.0000	6648.0	21.05%	67578.4	14.23%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-217	-5.018e+02	0.0000	7436.0	23.54%	77791.6	16.39%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-217	-5.008e+02	0.0000	7894.0	24.99%	83812.0	17.65%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-216	-4.985e+02	0.0000	11004.0	34.84%	125924.1	26.52%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-210	-4.840e+02	0.0000	6926.0	21.93%	71724.4	15.11%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-208	-4.806e+02	0.0000	7307.0	23.14%	76772.4	16.17%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-208	-4.796e+02	0.0000	9083.0	28.76%	100361.8	21.14%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-206	-4.746e+02	0.0000	7468.0	23.64%	79065.6	16.65%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-204	-4.704e+02	0.0000	8978.0	28.43%	99272.0	20.91%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-204	-4.703e+02	0.0000	8600.0	27.23%	94198.5	19.84%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-202	-4.667e+02	0.0000	11600.0	36.73%	135463.1	28.53%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-202	-4.666e+02	0.0000	6185.0	19.58%	62740.5	13.21%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-202	-4.663e+02	0.0000	7802.0	24.70%	83728.5	17.64%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-202	-4.662e+02	0.0000	7094.0	22.46%	74453.5	15.68%
SeqBias: TA-repeat	TATATATATA	1e-202	-4.657e+02	0.0000	18750.0	59.37%	240086.1	50.57%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-200	-4.620e+02	0.0000	7943.0	25.15%	85737.2	18.06%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-199	-4.583e+02	0.0000	8983.0	28.44%	99773.9	21.02%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-198	-4.578e+02	0.0000	5347.0	16.93%	52434.8	11.04%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-197	-4.557e+02	0.0000	8125.0	25.73%	88364.7	18.61%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-196	-4.535e+02	0.0000	8204.0	25.98%	89493.4	18.85%
SeqBias: A/T bias	WWWWWWWWWW	1e-195	-4.500e+02	0.0000	29625.0	93.80%	421384.0	88.76%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-193	-4.457e+02	0.0000	8366.0	26.49%	91931.6	19.36%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-192	-4.439e+02	0.0000	7567.0	23.96%	81375.6	17.14%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-191	-4.410e+02	0.0000	8551.0	27.07%	94578.6	19.92%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-188	-4.346e+02	0.0000	8217.0	26.02%	90331.4	19.03%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-187	-4.323e+02	0.0000	6937.0	21.96%	73495.2	15.48%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-183	-4.232e+02	0.0000	10998.0	34.82%	128817.3	27.13%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-181	-4.173e+02	0.0000	7881.0	24.95%	86464.1	18.21%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-180	-4.153e+02	0.0000	8183.0	25.91%	90572.8	19.08%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-179	-4.132e+02	0.0000	13502.0	42.75%	164782.5	34.71%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-177	-4.079e+02	0.0000	7361.0	23.31%	79890.7	16.83%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-176	-4.062e+02	0.0000	6851.0	21.69%	73238.1	15.43%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-172	-3.971e+02	0.0000	6267.0	19.84%	65936.1	13.89%
SeqBias: CG-repeat	CGCGCGCGCG	1e-172	-3.963e+02	0.0000	12902.0	40.85%	156929.0	33.05%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-171	-3.941e+02	0.0000	12710.0	40.24%	154280.2	32.50%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-171	-3.939e+02	0.0000	7022.0	22.23%	75906.2	15.99%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-171	-3.938e+02	0.0000	6167.0	19.53%	64749.0	13.64%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-170	-3.931e+02	0.0000	14510.0	45.94%	180324.2	37.98%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-168	-3.881e+02	0.0000	4976.0	15.75%	49747.1	10.48%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-167	-3.862e+02	0.0000	7064.0	22.37%	76728.5	16.16%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-167	-3.859e+02	0.0000	5360.0	16.97%	54655.1	11.51%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-163	-3.763e+02	0.0000	6669.0	21.12%	71877.4	15.14%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-163	-3.759e+02	0.0000	5703.0	18.06%	59345.3	12.50%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-160	-3.703e+02	0.0000	7996.0	25.32%	89746.2	18.90%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-159	-3.680e+02	0.0000	4923.0	15.59%	49670.0	10.46%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-157	-3.631e+02	0.0000	4928.0	15.60%	49879.1	10.51%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-153	-3.534e+02	0.0000	5237.0	16.58%	54096.9	11.39%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-153	-3.530e+02	0.0000	5847.0	18.51%	61954.7	13.05%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-153	-3.527e+02	0.0000	6503.0	20.59%	70528.2	14.86%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-151	-3.495e+02	0.0000	7090.0	22.45%	78408.5	16.52%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-150	-3.465e+02	0.0000	4754.0	15.05%	48182.1	10.15%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-150	-3.457e+02	0.0000	10027.0	31.75%	118605.7	24.98%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-148	-3.426e+02	0.0000	6078.0	19.24%	65313.3	13.76%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-146	-3.370e+02	0.0000	4249.0	13.45%	42141.7	8.88%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-145	-3.348e+02	0.0000	4668.0	14.78%	47455.0	10.00%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-144	-3.326e+02	0.0000	4386.0	13.89%	43977.6	9.26%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-144	-3.325e+02	0.0000	8396.0	26.58%	96692.7	20.37%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-143	-3.304e+02	0.0000	5312.0	16.82%	55800.9	11.75%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-143	-3.296e+02	0.0000	6268.0	19.85%	68269.1	14.38%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-142	-3.293e+02	0.0000	4894.0	15.50%	50489.8	10.63%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-140	-3.234e+02	0.0000	8583.0	27.18%	99638.7	20.99%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-140	-3.228e+02	0.0000	8822.0	27.93%	102946.3	21.68%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-139	-3.218e+02	0.0000	5752.0	18.21%	61791.3	13.02%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-138	-3.194e+02	0.0000	4223.0	13.37%	42329.5	8.92%
Tal1	CATCTG	1e-138	-3.186e+02	0.0000	9885.0	31.30%	117860.7	24.82%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-138	-3.182e+02	0.0000	5062.0	16.03%	52993.8	11.16%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-137	-3.171e+02	0.0000	5191.0	16.44%	54688.7	11.52%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-136	-3.146e+02	0.0000	6119.0	19.37%	66857.1	14.08%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-133	-3.073e+02	0.0000	4442.0	14.06%	45449.7	9.57%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-132	-3.054e+02	0.0000	4189.0	13.26%	42323.0	8.91%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-131	-3.038e+02	0.0000	5267.0	16.68%	56122.4	11.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-130	-3.010e+02	0.0000	6263.0	19.83%	69272.1	14.59%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-130	-3.001e+02	0.0000	6058.0	19.18%	66598.0	14.03%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-129	-2.989e+02	0.0000	8827.0	27.95%	104084.5	21.92%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-129	-2.979e+02	0.0000	3312.0	10.49%	31703.0	6.68%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-127	-2.929e+02	0.0000	5724.0	18.12%	62471.0	13.16%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-127	-2.925e+02	0.0000	6570.0	20.80%	73688.5	15.52%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-126	-2.904e+02	0.0000	4065.0	12.87%	41224.9	8.68%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-126	-2.903e+02	0.0000	3988.0	12.63%	40262.2	8.48%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-124	-2.875e+02	0.0000	4521.0	14.31%	47089.4	9.92%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-124	-2.872e+02	0.0000	8376.0	26.52%	98403.0	20.73%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-123	-2.846e+02	0.0000	5772.0	18.28%	63416.8	13.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-123	-2.835e+02	0.0000	5725.0	18.13%	62838.8	13.24%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-122	-2.816e+02	0.0000	4119.0	13.04%	42179.8	8.88%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-122	-2.815e+02	0.0000	7439.0	23.55%	85854.5	18.08%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-121	-2.800e+02	0.0000	4786.0	15.15%	50738.5	10.69%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-120	-2.777e+02	0.0000	4620.0	14.63%	48682.0	10.25%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-118	-2.734e+02	0.0000	8614.0	27.27%	102330.7	21.55%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-118	-2.732e+02	0.0000	3997.0	12.66%	40907.5	8.62%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-118	-2.730e+02	0.0000	4745.0	15.02%	50451.4	10.63%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-115	-2.670e+02	0.0000	8010.0	25.36%	94305.8	19.86%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-113	-2.609e+02	0.0000	4435.0	14.04%	46886.0	9.88%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-113	-2.606e+02	0.0000	8417.0	26.65%	100218.9	21.11%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-112	-2.595e+02	0.0000	4987.0	15.79%	54074.6	11.39%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-111	-2.573e+02	0.0000	4429.0	14.02%	46932.9	9.89%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-110	-2.542e+02	0.0000	4897.0	15.50%	53100.3	11.18%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-109	-2.511e+02	0.0000	7451.0	23.59%	87387.0	18.41%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-108	-2.506e+02	0.0000	3431.0	10.86%	34515.7	7.27%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-108	-2.503e+02	0.0000	4487.0	14.21%	47925.7	10.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-108	-2.501e+02	0.0000	3680.0	11.65%	37646.0	7.93%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-107	-2.485e+02	0.0000	7267.0	23.01%	84996.6	17.90%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-107	-2.469e+02	0.0000	6321.0	20.01%	72252.9	15.22%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-107	-2.464e+02	0.0000	2898.0	9.18%	28066.0	5.91%
SeqBias: CG bias	SSSSSSSSSS	1e-106	-2.455e+02	0.0000	29861.0	94.54%	432838.0	91.17%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-106	-2.451e+02	0.0000	7318.0	23.17%	85852.1	18.08%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-106	-2.449e+02	0.0000	3813.0	12.07%	39492.6	8.32%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-105	-2.423e+02	0.0000	4649.0	14.72%	50318.0	10.60%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-105	-2.418e+02	0.0000	4389.0	13.90%	46966.4	9.89%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-104	-2.414e+02	0.0000	6767.0	21.43%	78520.9	16.54%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-103	-2.372e+02	0.0000	4414.0	13.98%	47456.8	10.00%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-101	-2.336e+02	0.0000	3790.0	12.00%	39578.9	8.34%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-101	-2.333e+02	0.0000	2325.0	7.36%	21519.6	4.53%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-100	-2.317e+02	0.0000	4498.0	14.24%	48748.2	10.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-100	-2.305e+02	0.0000	4368.0	13.83%	47109.2	9.92%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-99	-2.302e+02	0.0000	9114.0	28.86%	111477.7	23.48%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-98	-2.275e+02	0.0000	8326.0	26.36%	100617.2	21.19%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-98	-2.274e+02	0.0000	3649.0	11.55%	37997.2	8.00%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-97	-2.242e+02	0.0000	3363.0	10.65%	34492.4	7.27%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-97	-2.237e+02	0.0000	3215.0	10.18%	32651.4	6.88%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-96	-2.211e+02	0.0000	5133.0	16.25%	57498.5	12.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-95	-2.194e+02	0.0000	3522.0	11.15%	36655.9	7.72%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-95	-2.192e+02	0.0000	3836.0	12.15%	40662.9	8.56%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-92	-2.124e+02	0.0000	3693.0	11.69%	39074.0	8.23%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-90	-2.085e+02	0.0000	6847.0	21.68%	81179.5	17.10%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-90	-2.082e+02	0.0000	3114.0	9.86%	31882.1	6.72%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-90	-2.081e+02	0.0000	3702.0	11.72%	39343.2	8.29%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-89	-2.069e+02	0.0000	2597.0	8.22%	25508.7	5.37%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-88	-2.040e+02	0.0000	2584.0	8.18%	25434.6	5.36%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-88	-2.038e+02	0.0000	3554.0	11.25%	37600.5	7.92%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-88	-2.030e+02	0.0000	2643.0	8.37%	26190.0	5.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-86	-1.995e+02	0.0000	3710.0	11.75%	39756.4	8.37%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-84	-1.938e+02	0.0000	6509.0	20.61%	77292.4	16.28%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-84	-1.937e+02	0.0000	3440.0	10.89%	36505.5	7.69%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-83	-1.912e+02	0.0000	2917.0	9.24%	29962.7	6.31%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-80	-1.847e+02	0.0000	3019.0	9.56%	31463.7	6.63%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-77	-1.793e+02	0.0000	2426.0	7.68%	24227.1	5.10%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-77	-1.780e+02	0.0000	2563.0	8.11%	25964.9	5.47%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-75	-1.739e+02	0.0000	2546.0	8.06%	25885.3	5.45%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-74	-1.726e+02	0.0000	1806.0	5.72%	16896.0	3.56%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-74	-1.725e+02	0.0000	3855.0	12.21%	42687.5	8.99%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-74	-1.708e+02	0.0000	3121.0	9.88%	33256.0	7.00%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-73	-1.696e+02	0.0000	2753.0	8.72%	28620.4	6.03%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-73	-1.689e+02	0.0000	3674.0	11.63%	40471.0	8.52%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-72	-1.673e+02	0.0000	2091.0	6.62%	20473.2	4.31%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-72	-1.671e+02	0.0000	2574.0	8.15%	26453.6	5.57%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-71	-1.649e+02	0.0000	5280.0	16.72%	62020.6	13.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-71	-1.648e+02	0.0000	2150.0	6.81%	21270.6	4.48%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-71	-1.645e+02	0.0000	4437.0	14.05%	50719.9	10.68%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-70	-1.634e+02	0.0000	4031.0	12.76%	45386.7	9.56%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-70	-1.630e+02	0.0000	1869.0	5.92%	17906.4	3.77%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-70	-1.621e+02	0.0000	7742.0	24.51%	96131.0	20.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-69	-1.598e+02	0.0000	5798.0	18.36%	69335.0	14.60%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-68	-1.574e+02	0.0000	2002.0	6.34%	19676.8	4.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-67	-1.565e+02	0.0000	2635.0	8.34%	27583.4	5.81%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-67	-1.556e+02	0.0000	1922.0	6.09%	18755.8	3.95%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-66	-1.536e+02	0.0000	2862.0	9.06%	30575.2	6.44%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-66	-1.530e+02	0.0000	2817.0	8.92%	30024.8	6.32%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-66	-1.529e+02	0.0000	2619.0	8.29%	27507.4	5.79%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-64	-1.491e+02	0.0000	2632.0	8.33%	27806.2	5.86%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-64	-1.475e+02	0.0000	2338.0	7.40%	24151.1	5.09%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-62	-1.447e+02	0.0000	1508.0	4.77%	14079.7	2.97%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-62	-1.447e+02	0.0000	2507.0	7.94%	26381.1	5.56%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-62	-1.446e+02	0.0000	2100.0	6.65%	21277.4	4.48%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-62	-1.434e+02	0.0000	1431.0	4.53%	13201.5	2.78%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-61	-1.422e+02	0.0000	2237.0	7.08%	23065.7	4.86%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-61	-1.411e+02	0.0000	1899.0	6.01%	18903.5	3.98%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-60	-1.404e+02	0.0000	2251.0	7.13%	23300.8	4.91%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-60	-1.403e+02	0.0000	2207.0	6.99%	22751.6	4.79%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-60	-1.382e+02	0.0000	1767.0	5.59%	17375.1	3.66%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-59	-1.373e+02	0.0000	2483.0	7.86%	26343.1	5.55%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-59	-1.373e+02	0.0000	1527.0	4.83%	14502.1	3.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-59	-1.370e+02	0.0000	2220.0	7.03%	23028.8	4.85%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-58	-1.357e+02	0.0000	1743.0	5.52%	17156.1	3.61%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-58	-1.342e+02	0.0000	2387.0	7.56%	25235.0	5.32%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-57	-1.331e+02	0.0000	3159.0	10.00%	35239.8	7.42%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-57	-1.318e+02	0.0000	1901.0	6.02%	19218.6	4.05%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-55	-1.282e+02	0.0000	31538.0	99.85%	470932.5	99.19%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-55	-1.275e+02	0.0000	2794.0	8.85%	30720.5	6.47%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-54	-1.266e+02	0.0000	1473.0	4.66%	14148.1	2.98%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-54	-1.254e+02	0.0000	1281.0	4.06%	11890.6	2.50%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-52	-1.198e+02	0.0000	2051.0	6.49%	21498.8	4.53%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-51	-1.197e+02	0.0000	2047.0	6.48%	21453.4	4.52%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-50	-1.165e+02	0.0000	1930.0	6.11%	20093.4	4.23%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-49	-1.134e+02	0.0000	1710.0	5.41%	17449.8	3.68%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-48	-1.109e+02	0.0000	1877.0	5.94%	19622.1	4.13%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-47	-1.099e+02	0.0000	1461.0	4.63%	14487.5	3.05%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-47	-1.091e+02	0.0000	1782.0	5.64%	18492.3	3.90%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-47	-1.086e+02	0.0000	1698.0	5.38%	17459.1	3.68%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-46	-1.074e+02	0.0000	5527.0	17.50%	68682.8	14.47%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-46	-1.061e+02	0.0000	1908.0	6.04%	20187.9	4.25%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-45	-1.053e+02	0.0000	2347.0	7.43%	25844.8	5.44%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-45	-1.044e+02	0.0000	3021.0	9.56%	34730.8	7.32%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-45	-1.038e+02	0.0000	1773.0	5.61%	18565.5	3.91%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-44	-1.029e+02	0.0000	1771.0	5.61%	18573.2	3.91%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-44	-1.023e+02	0.0000	3102.0	9.82%	35912.0	7.56%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-44	-1.020e+02	0.0000	1850.0	5.86%	19603.9	4.13%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-43	-1.008e+02	0.0000	1426.0	4.51%	14341.2	3.02%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-43	-9.981e+01	0.0000	1546.0	4.89%	15860.3	3.34%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-43	-9.974e+01	0.0000	2109.0	6.68%	23001.2	4.84%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-43	-9.950e+01	0.0000	1713.0	5.42%	17963.5	3.78%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-42	-9.896e+01	0.0000	1621.0	5.13%	16826.9	3.54%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-42	-9.888e+01	0.0000	1676.0	5.31%	17519.9	3.69%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-42	-9.731e+01	0.0000	1321.0	4.18%	13161.1	2.77%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-41	-9.463e+01	0.0000	1625.0	5.15%	17029.6	3.59%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-40	-9.220e+01	0.0000	2765.0	8.75%	31930.3	6.73%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-39	-8.989e+01	0.0000	1094.0	3.46%	10622.6	2.24%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-38	-8.829e+01	0.0000	1025.0	3.25%	9837.2	2.07%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-38	-8.818e+01	0.0000	1494.0	4.73%	15612.4	3.29%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-38	-8.799e+01	0.0000	742.0	2.35%	6523.4	1.37%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-37	-8.695e+01	0.0000	1444.0	4.57%	15028.7	3.17%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-37	-8.677e+01	0.0000	1278.0	4.05%	12967.4	2.73%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-37	-8.631e+01	0.0000	1368.0	4.33%	14100.4	2.97%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-35	-8.273e+01	0.0000	5797.0	18.35%	74217.4	15.63%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-35	-8.191e+01	0.0000	1347.0	4.26%	13990.0	2.95%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-35	-8.173e+01	0.0000	2016.0	6.38%	22562.6	4.75%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-33	-7.773e+01	0.0000	1419.0	4.49%	15048.2	3.17%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-33	-7.757e+01	0.0000	1764.0	5.59%	19471.2	4.10%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-33	-7.721e+01	0.0000	1464.0	4.64%	15638.2	3.29%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-33	-7.691e+01	0.0000	806.0	2.55%	7538.3	1.59%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-33	-7.680e+01	0.0000	1440.0	4.56%	15349.2	3.23%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-32	-7.407e+01	0.0000	1556.0	4.93%	16937.2	3.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-31	-7.271e+01	0.0000	1123.0	3.56%	11514.2	2.43%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-31	-7.218e+01	0.0000	581.0	1.84%	5042.4	1.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-31	-7.209e+01	0.0000	868.0	2.75%	8411.1	1.77%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-30	-7.002e+01	0.0000	885.0	2.80%	8677.8	1.83%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-30	-6.986e+01	0.0000	6189.0	19.60%	80826.8	17.02%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-30	-6.984e+01	0.0000	896.0	2.84%	8816.4	1.86%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-30	-6.972e+01	0.0000	942.0	2.98%	9381.0	1.98%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-30	-6.931e+01	0.0000	767.0	2.43%	7279.5	1.53%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-30	-6.909e+01	0.0000	1234.0	3.91%	13032.1	2.74%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-28	-6.550e+01	0.0000	899.0	2.85%	8986.2	1.89%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-27	-6.394e+01	0.0000	961.0	3.04%	9800.1	2.06%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-27	-6.374e+01	0.0000	708.0	2.24%	6729.4	1.42%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-26	-6.094e+01	0.0000	834.0	2.64%	8334.9	1.76%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-26	-6.084e+01	0.0000	1779.0	5.63%	20437.9	4.30%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-26	-6.081e+01	0.0000	1274.0	4.03%	13863.8	2.92%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-26	-6.072e+01	0.0000	1213.0	3.84%	13087.1	2.76%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-26	-6.002e+01	0.0000	880.0	2.79%	8929.9	1.88%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-25	-5.941e+01	0.0000	1177.0	3.73%	12680.9	2.67%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-25	-5.897e+01	0.0000	881.0	2.79%	8976.9	1.89%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-25	-5.833e+01	0.0000	795.0	2.52%	7940.0	1.67%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-25	-5.768e+01	0.0000	669.0	2.12%	6432.8	1.35%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-24	-5.750e+01	0.0000	1004.0	3.18%	10562.3	2.22%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-24	-5.605e+01	0.0000	825.0	2.61%	8381.5	1.77%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-24	-5.587e+01	0.0000	1069.0	3.38%	11445.2	2.41%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-24	-5.534e+01	0.0000	682.0	2.16%	6656.3	1.40%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-23	-5.323e+01	0.0000	1092.0	3.46%	11843.4	2.49%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-22	-5.272e+01	0.0000	1707.0	5.40%	19901.3	4.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-22	-5.246e+01	0.0000	831.0	2.63%	8577.9	1.81%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-22	-5.209e+01	0.0000	953.0	3.02%	10121.3	2.13%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-21	-5.056e+01	0.0000	870.0	2.75%	9132.7	1.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-21	-5.049e+01	0.0000	3185.0	10.08%	40185.0	8.46%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-21	-5.030e+01	0.0000	742.0	2.35%	7547.8	1.59%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-21	-4.963e+01	0.0000	2992.0	9.47%	37574.3	7.91%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-20	-4.785e+01	0.0000	668.0	2.11%	6716.1	1.41%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-19	-4.532e+01	0.0000	688.0	2.18%	7046.9	1.48%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-19	-4.402e+01	0.0000	622.0	1.97%	6275.4	1.32%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-19	-4.399e+01	0.0000	689.0	2.18%	7104.6	1.50%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-19	-4.389e+01	0.0000	622.0	1.97%	6279.0	1.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-19	-4.389e+01	0.0000	622.0	1.97%	6279.0	1.32%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-18	-4.355e+01	0.0000	516.0	1.63%	5000.4	1.05%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-17	-4.006e+01	0.0000	1065.0	3.37%	12073.3	2.54%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-17	-3.941e+01	0.0000	534.0	1.69%	5344.1	1.13%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-16	-3.886e+01	0.0000	632.0	2.00%	6574.7	1.38%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-16	-3.791e+01	0.0000	519.0	1.64%	5208.8	1.10%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-16	-3.715e+01	0.0000	4484.0	14.20%	59699.1	12.57%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-15	-3.665e+01	0.0000	619.0	1.96%	6491.3	1.37%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-15	-3.566e+01	0.0000	4087.0	12.94%	54200.2	11.42%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-15	-3.563e+01	0.0000	635.0	2.01%	6730.1	1.42%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-14	-3.348e+01	0.0000	593.0	1.88%	6282.2	1.32%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-12	-2.820e+01	0.0000	620.0	1.96%	6839.1	1.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-11	-2.703e+01	0.0000	428.0	1.36%	4449.9	0.94%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-11	-2.689e+01	0.0000	908.0	2.87%	10680.6	2.25%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-11	-2.549e+01	0.0000	1003.0	3.18%	12033.5	2.53%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-11	-2.538e+01	0.0000	843.0	2.67%	9899.5	2.09%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.534e+01	0.0000	910.0	2.88%	10795.5	2.27%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-10	-2.431e+01	0.0000	460.0	1.46%	4954.3	1.04%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-9	-2.245e+01	0.0000	715.0	2.26%	8360.9	1.76%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-9	-2.227e+01	0.0000	177.0	0.56%	1562.8	0.33%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-9	-2.177e+01	0.0000	616.0	1.95%	7088.9	1.49%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-9	-2.171e+01	0.0000	423.0	1.34%	4588.8	0.97%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-9	-2.109e+01	0.0000	217.0	0.69%	2058.3	0.43%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-7	-1.816e+01	0.0000	350.0	1.11%	3802.2	0.80%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-7	-1.767e+01	0.0000	2133.0	6.75%	28397.5	5.98%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-6	-1.587e+01	0.0000	196.0	0.62%	1957.5	0.41%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-6	-1.569e+01	0.0000	680.0	2.15%	8295.8	1.75%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-5	-1.353e+01	0.0000	31582.0	99.99%	474477.7	99.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-5	-1.329e+01	0.0000	216.0	0.68%	2294.0	0.48%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-5	-1.281e+01	0.0000	355.0	1.12%	4112.6	0.87%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-5	-1.271e+01	0.0000	131.0	0.41%	1264.6	0.27%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-5	-1.255e+01	0.0000	286.0	0.91%	3221.9	0.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.211e+01	0.0000	333.0	1.05%	3858.8	0.81%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-4	-1.130e+01	0.0000	170.0	0.54%	1788.6	0.38%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-1.099e+01	0.0000	63.0	0.20%	517.9	0.11%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-4	-1.019e+01	0.0000	184.0	0.58%	2008.1	0.42%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-4	-9.925e+00	0.0001	174.0	0.55%	1891.5	0.40%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-9.481e+00	0.0001	815.0	2.58%	10659.0	2.25%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-4	-9.283e+00	0.0001	116.0	0.37%	1185.1	0.25%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-2	-6.795e+00	0.0012	83.0	0.26%	859.0	0.18%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-1	-4.372e+00	0.0131	45.0	0.14%	464.8	0.10%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-1	-4.185e+00	0.0157	45.0	0.14%	470.3	0.10%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-3.472e+00	0.0321	63.0	0.20%	730.7	0.15%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-3.269e+00	0.0391	42.0	0.13%	464.2	0.10%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.152e+00	0.1194	99.0	0.31%	1306.7	0.28%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.739e+00	0.1799	31584.0	100.00%	474741.1	99.99%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.329e+00	0.2703	9.0	0.03%	103.2	0.02%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.031e+00	0.3634	31584.0	100.00%	474752.3	100.00%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-8.737e-01	0.4240	602.0	1.91%	8965.5	1.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.523e-01	0.4320	49.0	0.16%	711.5	0.15%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.288e-01	0.8883	31584.0	100.00%	474766.7	100.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	2939.0	9.31%	153788.0	32.39%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	460.0	1.46%	17338.4	3.65%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	31584.0	100.00%	474768.8	100.00%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	4019.0	12.72%	170975.9	36.01%