Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 30729)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 478877)	% of Background Sequences with Motif
SeqBias: GA-repeat	GAGAGAGAGA	1e-420	-9.675e+02	0.0000	29306.0	95.37%	421172.4	87.95%
SeqBias: CA-repeat	CACACACACA	1e-376	-8.679e+02	0.0000	27451.0	89.33%	384632.8	80.32%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-368	-8.491e+02	0.0000	24222.0	78.82%	325514.4	67.97%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-327	-7.549e+02	0.0000	22618.0	73.60%	301111.3	62.88%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-324	-7.480e+02	0.0000	22187.0	72.20%	294095.4	61.41%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-322	-7.416e+02	0.0000	22169.0	72.14%	294027.2	61.40%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-306	-7.063e+02	0.0000	18499.0	60.20%	235655.7	49.21%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-296	-6.819e+02	0.0000	17745.0	57.74%	224732.4	46.93%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-294	-6.783e+02	0.0000	13352.0	43.45%	158275.5	33.05%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-292	-6.726e+02	0.0000	12616.0	41.05%	147726.7	30.85%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-283	-6.526e+02	0.0000	27337.0	88.96%	388975.2	81.22%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-274	-6.322e+02	0.0000	19759.0	64.30%	258632.9	54.01%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-272	-6.266e+02	0.0000	14884.0	48.43%	182966.7	38.21%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-266	-6.146e+02	0.0000	14690.0	47.80%	180510.8	37.69%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-258	-5.954e+02	0.0000	24121.0	78.49%	332811.3	69.50%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-254	-5.858e+02	0.0000	15899.0	51.74%	199978.9	41.76%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-249	-5.748e+02	0.0000	18986.0	61.78%	248603.8	51.91%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-241	-5.560e+02	0.0000	15096.0	49.12%	188972.4	39.46%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-240	-5.539e+02	0.0000	11087.0	36.08%	129911.6	27.13%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-239	-5.507e+02	0.0000	11221.0	36.51%	131956.5	27.55%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-230	-5.316e+02	0.0000	13167.0	42.85%	161082.4	33.64%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-229	-5.276e+02	0.0000	12593.0	40.98%	152783.6	31.90%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-226	-5.222e+02	0.0000	18713.0	60.89%	246517.3	51.48%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-226	-5.213e+02	0.0000	13298.0	43.27%	163443.5	34.13%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-221	-5.095e+02	0.0000	19222.0	62.55%	255188.8	53.29%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-216	-4.993e+02	0.0000	12638.0	41.13%	154588.5	32.28%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-212	-4.903e+02	0.0000	13309.0	43.31%	164894.4	34.43%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-212	-4.888e+02	0.0000	13400.0	43.61%	166311.6	34.73%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-210	-4.850e+02	0.0000	9954.0	32.39%	116321.9	24.29%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-206	-4.760e+02	0.0000	11772.0	38.31%	142853.7	29.83%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-205	-4.733e+02	0.0000	8757.0	28.50%	99910.2	20.86%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-204	-4.711e+02	0.0000	11384.0	37.05%	137405.5	28.69%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-203	-4.682e+02	0.0000	9198.0	29.93%	106273.0	22.19%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-202	-4.663e+02	0.0000	12479.0	40.61%	153627.7	32.08%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-201	-4.643e+02	0.0000	11759.0	38.27%	143145.3	29.89%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-201	-4.641e+02	0.0000	12079.0	39.31%	147840.8	30.87%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-198	-4.569e+02	0.0000	10911.0	35.51%	131136.8	27.38%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-197	-4.541e+02	0.0000	15735.0	51.20%	203143.9	42.42%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-194	-4.468e+02	0.0000	13119.0	42.69%	163951.2	34.24%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-191	-4.416e+02	0.0000	14578.0	47.44%	186090.2	38.86%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-190	-4.381e+02	0.0000	9572.0	31.15%	112707.6	23.54%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-173	-3.987e+02	0.0000	9354.0	30.44%	111197.4	23.22%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-173	-3.986e+02	0.0000	14603.0	47.52%	188499.5	39.36%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-171	-3.945e+02	0.0000	15014.0	48.86%	194954.3	40.71%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-168	-3.869e+02	0.0000	10400.0	33.84%	126709.9	26.46%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-167	-3.860e+02	0.0000	7092.0	23.08%	80057.0	16.72%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-164	-3.785e+02	0.0000	8627.0	28.07%	101724.8	21.24%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-163	-3.775e+02	0.0000	13134.0	42.74%	167383.5	34.95%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-160	-3.703e+02	0.0000	9296.0	30.25%	111563.1	23.30%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-155	-3.585e+02	0.0000	17069.0	55.55%	228507.8	47.72%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-152	-3.522e+02	0.0000	9110.0	29.65%	109690.5	22.91%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-151	-3.494e+02	0.0000	10959.0	35.66%	136552.2	28.51%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-151	-3.493e+02	0.0000	19354.0	62.98%	265086.6	55.35%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-151	-3.482e+02	0.0000	11413.0	37.14%	143270.9	29.92%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-150	-3.455e+02	0.0000	13375.0	43.52%	172590.7	36.04%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-149	-3.445e+02	0.0000	9522.0	30.99%	115934.0	24.21%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-149	-3.442e+02	0.0000	9792.0	31.86%	119838.8	25.02%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-149	-3.439e+02	0.0000	13807.0	44.93%	179185.1	37.42%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-145	-3.340e+02	0.0000	10658.0	34.68%	132885.7	27.75%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-143	-3.297e+02	0.0000	8093.0	26.34%	96229.4	20.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-142	-3.289e+02	0.0000	6764.0	22.01%	77707.3	16.23%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-142	-3.270e+02	0.0000	5045.0	16.42%	54484.0	11.38%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-141	-3.252e+02	0.0000	7926.0	25.79%	94067.7	19.64%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-139	-3.219e+02	0.0000	10250.0	33.36%	127521.6	26.63%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-138	-3.199e+02	0.0000	8524.0	27.74%	102765.6	21.46%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-138	-3.187e+02	0.0000	7748.0	25.21%	91837.8	19.18%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-137	-3.162e+02	0.0000	9658.0	31.43%	119207.4	24.89%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-135	-3.121e+02	0.0000	8718.0	28.37%	105886.6	22.11%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-134	-3.108e+02	0.0000	11364.0	36.98%	144408.0	30.15%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-134	-3.086e+02	0.0000	7462.0	24.28%	88254.6	18.43%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-132	-3.045e+02	0.0000	6007.0	19.55%	68260.8	14.25%
SeqBias: A/T bias	WWWWWWWWWW	1e-131	-3.019e+02	0.0000	28500.0	92.74%	423557.5	88.45%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-130	-3.009e+02	0.0000	8753.0	28.48%	106905.9	22.32%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-129	-2.983e+02	0.0000	7088.0	23.07%	83458.3	17.43%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-129	-2.979e+02	0.0000	11169.0	36.35%	142197.4	29.69%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-128	-2.958e+02	0.0000	9933.0	32.32%	124191.7	25.93%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-126	-2.915e+02	0.0000	9274.0	30.18%	114852.6	23.98%
SeqBias: TA-repeat	TATATATATA	1e-125	-2.894e+02	0.0000	16606.0	54.04%	225134.6	47.01%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-124	-2.872e+02	0.0000	14930.0	48.58%	199378.2	41.63%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-124	-2.871e+02	0.0000	5718.0	18.61%	64989.4	13.57%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-123	-2.853e+02	0.0000	10233.0	33.30%	129101.8	26.96%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-121	-2.800e+02	0.0000	6432.0	20.93%	75100.2	15.68%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-121	-2.792e+02	0.0000	7493.0	24.38%	89989.7	18.79%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-121	-2.787e+02	0.0000	6809.0	22.16%	80402.8	16.79%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-119	-2.762e+02	0.0000	6298.0	20.49%	73401.3	15.33%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-119	-2.751e+02	0.0000	6863.0	22.33%	81315.0	16.98%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-117	-2.700e+02	0.0000	12033.0	39.16%	156536.2	32.69%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-116	-2.682e+02	0.0000	6921.0	22.52%	82434.6	17.21%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-114	-2.635e+02	0.0000	6592.0	21.45%	78036.5	16.30%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-114	-2.635e+02	0.0000	7246.0	23.58%	87220.9	18.21%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-113	-2.618e+02	0.0000	5689.0	18.51%	65601.2	13.70%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-113	-2.607e+02	0.0000	5789.0	18.84%	67024.6	14.00%
SeqBias: CG-repeat	CGCGCGCGCG	1e-112	-2.593e+02	0.0000	12568.0	40.90%	165165.1	34.49%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-111	-2.571e+02	0.0000	8371.0	27.24%	103553.9	21.62%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-111	-2.570e+02	0.0000	7314.0	23.80%	88486.1	18.48%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-111	-2.568e+02	0.0000	7197.0	23.42%	86842.8	18.13%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-110	-2.553e+02	0.0000	5860.0	19.07%	68227.0	14.25%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-110	-2.541e+02	0.0000	10549.0	34.33%	135413.9	28.28%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-109	-2.511e+02	0.0000	6751.0	21.97%	80821.7	16.88%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-107	-2.467e+02	0.0000	7519.0	24.47%	91889.4	19.19%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-98	-2.277e+02	0.0000	6047.0	19.68%	72040.2	15.04%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-98	-2.267e+02	0.0000	7560.0	24.60%	93475.3	19.52%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-98	-2.259e+02	0.0000	6976.0	22.70%	85201.7	17.79%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-97	-2.253e+02	0.0000	8249.0	26.84%	103444.5	21.60%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-96	-2.216e+02	0.0000	12486.0	40.63%	166228.7	34.71%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-96	-2.215e+02	0.0000	5796.0	18.86%	68826.9	14.37%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-95	-2.188e+02	0.0000	6657.0	21.66%	81038.5	16.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-94	-2.176e+02	0.0000	5657.0	18.41%	67072.1	14.01%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-94	-2.174e+02	0.0000	4176.0	13.59%	46811.7	9.78%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-93	-2.149e+02	0.0000	6851.0	22.29%	83977.8	17.54%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-91	-2.105e+02	0.0000	7365.0	23.97%	91532.9	19.11%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-90	-2.086e+02	0.0000	3882.0	12.63%	43208.1	9.02%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-90	-2.073e+02	0.0000	4329.0	14.09%	49278.3	10.29%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-89	-2.072e+02	0.0000	12560.0	40.87%	168276.3	35.14%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-89	-2.067e+02	0.0000	5679.0	18.48%	67882.4	14.18%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-89	-2.055e+02	0.0000	5297.0	17.24%	62625.0	13.08%
SeqBias: CG bias	SSSSSSSSSS	1e-88	-2.049e+02	0.0000	29427.0	95.76%	445177.5	92.96%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-88	-2.044e+02	0.0000	5230.0	17.02%	61750.7	12.89%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-88	-2.041e+02	0.0000	4993.0	16.25%	58489.6	12.21%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-87	-2.023e+02	0.0000	7266.0	23.64%	90555.9	18.91%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-87	-2.021e+02	0.0000	4947.0	16.10%	57943.0	12.10%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-87	-2.010e+02	0.0000	6831.0	22.23%	84411.0	17.63%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-86	-1.995e+02	0.0000	6841.0	22.26%	84631.4	17.67%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-85	-1.972e+02	0.0000	5876.0	19.12%	71098.7	14.85%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-85	-1.963e+02	0.0000	11622.0	37.82%	154879.8	32.34%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-85	-1.958e+02	0.0000	5754.0	18.72%	69455.3	14.50%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-83	-1.934e+02	0.0000	4001.0	13.02%	45404.4	9.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-83	-1.925e+02	0.0000	8652.0	28.15%	111152.9	23.21%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-83	-1.916e+02	0.0000	4559.0	14.84%	53075.1	11.08%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-82	-1.901e+02	0.0000	4661.0	15.17%	54543.4	11.39%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-81	-1.877e+02	0.0000	5481.0	17.84%	66030.6	13.79%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-81	-1.870e+02	0.0000	3033.0	9.87%	32752.9	6.84%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-80	-1.857e+02	0.0000	4287.0	13.95%	49611.7	10.36%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-80	-1.853e+02	0.0000	3712.0	12.08%	41837.5	8.74%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-80	-1.850e+02	0.0000	7288.0	23.72%	91828.2	19.18%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-79	-1.830e+02	0.0000	5356.0	17.43%	64511.5	13.47%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-79	-1.820e+02	0.0000	3664.0	11.92%	41324.5	8.63%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-78	-1.818e+02	0.0000	4637.0	15.09%	54584.8	11.40%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-78	-1.797e+02	0.0000	6565.0	21.36%	81762.4	17.07%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-75	-1.735e+02	0.0000	3523.0	11.46%	39769.9	8.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-75	-1.729e+02	0.0000	5555.0	18.08%	67810.8	14.16%
Tal1	CATCTG	1e-74	-1.717e+02	0.0000	9116.0	29.66%	119256.5	24.90%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-73	-1.698e+02	0.0000	3370.0	10.97%	37865.1	7.91%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-73	-1.694e+02	0.0000	5378.0	17.50%	65501.3	13.68%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-72	-1.661e+02	0.0000	4810.0	15.65%	57727.4	12.05%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-71	-1.654e+02	0.0000	4190.0	13.63%	49184.4	10.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-71	-1.644e+02	0.0000	4202.0	13.67%	49393.4	10.31%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-71	-1.635e+02	0.0000	7610.0	24.76%	97756.9	20.41%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-70	-1.634e+02	0.0000	7978.0	25.96%	103114.4	21.53%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-70	-1.632e+02	0.0000	5527.0	17.99%	67924.2	14.18%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-70	-1.631e+02	0.0000	5956.0	19.38%	74006.7	15.45%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-70	-1.620e+02	0.0000	5214.0	16.97%	63581.0	13.28%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-69	-1.608e+02	0.0000	2648.0	8.62%	28635.4	5.98%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-69	-1.604e+02	0.0000	6360.0	20.70%	79920.2	16.69%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-69	-1.597e+02	0.0000	4047.0	13.17%	47483.0	9.92%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-68	-1.577e+02	0.0000	4084.0	13.29%	48081.9	10.04%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-67	-1.555e+02	0.0000	4253.0	13.84%	50513.9	10.55%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-63	-1.464e+02	0.0000	7359.0	23.95%	95195.8	19.88%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-63	-1.458e+02	0.0000	2067.0	6.73%	21613.8	4.51%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-62	-1.430e+02	0.0000	5480.0	17.83%	68378.1	14.28%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-61	-1.417e+02	0.0000	3480.0	11.32%	40546.0	8.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-61	-1.412e+02	0.0000	4342.0	14.13%	52457.9	10.95%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-61	-1.411e+02	0.0000	3915.0	12.74%	46538.4	9.72%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-60	-1.391e+02	0.0000	3567.0	11.61%	41850.6	8.74%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-60	-1.384e+02	0.0000	2841.0	9.25%	32047.3	6.69%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-59	-1.380e+02	0.0000	6243.0	20.32%	79584.6	16.62%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-59	-1.371e+02	0.0000	6155.0	20.03%	78374.8	16.37%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-59	-1.366e+02	0.0000	3008.0	9.79%	34365.2	7.18%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-59	-1.363e+02	0.0000	3493.0	11.37%	40966.8	8.55%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-59	-1.360e+02	0.0000	7099.0	23.10%	92097.9	19.23%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-58	-1.358e+02	0.0000	3189.0	10.38%	36849.5	7.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-57	-1.331e+02	0.0000	4418.0	14.38%	53940.5	11.26%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-57	-1.330e+02	0.0000	2981.0	9.70%	34155.0	7.13%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-56	-1.309e+02	0.0000	3559.0	11.58%	42130.7	8.80%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-56	-1.298e+02	0.0000	7402.0	24.09%	96941.1	20.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-55	-1.288e+02	0.0000	3999.0	13.01%	48318.5	10.09%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-55	-1.285e+02	0.0000	7055.0	22.96%	91963.9	19.20%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-55	-1.280e+02	0.0000	4111.0	13.38%	49923.5	10.42%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-55	-1.273e+02	0.0000	3215.0	10.46%	37588.5	7.85%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-54	-1.256e+02	0.0000	3011.0	9.80%	34889.8	7.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-54	-1.249e+02	0.0000	4800.0	15.62%	59773.0	12.48%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-53	-1.237e+02	0.0000	1617.0	5.26%	16578.9	3.46%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-53	-1.231e+02	0.0000	3684.0	11.99%	44238.0	9.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-53	-1.226e+02	0.0000	2552.0	8.30%	28828.2	6.02%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-53	-1.226e+02	0.0000	2217.0	7.21%	24381.9	5.09%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-52	-1.217e+02	0.0000	3886.0	12.65%	47116.0	9.84%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-52	-1.216e+02	0.0000	3987.0	12.97%	48528.7	10.13%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-52	-1.200e+02	0.0000	4341.0	14.13%	53580.5	11.19%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-51	-1.195e+02	0.0000	3867.0	12.58%	46968.7	9.81%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-51	-1.190e+02	0.0000	3803.0	12.38%	46105.8	9.63%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-51	-1.185e+02	0.0000	2930.0	9.53%	34108.2	7.12%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-51	-1.179e+02	0.0000	2036.0	6.63%	22181.5	4.63%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-50	-1.159e+02	0.0000	4163.0	13.55%	51306.9	10.71%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-50	-1.157e+02	0.0000	2428.0	7.90%	27458.7	5.73%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-50	-1.157e+02	0.0000	1323.0	4.31%	13124.7	2.74%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-50	-1.153e+02	0.0000	6557.0	21.34%	85629.9	17.88%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-49	-1.149e+02	0.0000	4030.0	13.11%	49495.5	10.34%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-49	-1.145e+02	0.0000	1817.0	5.91%	19447.8	4.06%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-49	-1.145e+02	0.0000	2385.0	7.76%	26934.6	5.62%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-49	-1.138e+02	0.0000	3207.0	10.44%	38119.6	7.96%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-49	-1.138e+02	0.0000	3762.0	12.24%	45809.5	9.57%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-48	-1.123e+02	0.0000	6863.0	22.33%	90305.8	18.86%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-48	-1.106e+02	0.0000	3237.0	10.53%	38694.6	8.08%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-47	-1.104e+02	0.0000	3661.0	11.91%	44586.8	9.31%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-47	-1.092e+02	0.0000	2116.0	6.89%	23570.4	4.92%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-46	-1.082e+02	0.0000	2857.0	9.30%	33593.4	7.01%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-46	-1.082e+02	0.0000	3407.0	11.09%	41170.2	8.60%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-46	-1.080e+02	0.0000	6347.0	20.65%	83097.1	17.35%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-46	-1.078e+02	0.0000	5221.0	16.99%	66829.3	13.96%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-46	-1.066e+02	0.0000	3414.0	11.11%	41350.5	8.63%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-44	-1.036e+02	0.0000	3086.0	10.04%	36964.4	7.72%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-43	-1.013e+02	0.0000	2530.0	8.23%	29466.9	6.15%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-42	-9.846e+01	0.0000	4929.0	16.04%	63261.1	13.21%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-42	-9.817e+01	0.0000	2160.0	7.03%	24611.7	5.14%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-42	-9.804e+01	0.0000	5909.0	19.23%	77449.1	16.17%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-42	-9.783e+01	0.0000	2252.0	7.33%	25862.0	5.40%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-42	-9.748e+01	0.0000	3020.0	9.83%	36369.2	7.59%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-41	-9.563e+01	0.0000	2541.0	8.27%	29881.6	6.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-41	-9.533e+01	0.0000	2566.0	8.35%	30237.0	6.31%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-41	-9.455e+01	0.0000	30670.0	99.80%	475175.2	99.22%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-41	-9.451e+01	0.0000	3126.0	10.17%	37997.8	7.93%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-40	-9.432e+01	0.0000	2325.0	7.57%	27006.0	5.64%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-40	-9.384e+01	0.0000	3374.0	10.98%	41492.6	8.66%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-40	-9.352e+01	0.0000	1917.0	6.24%	21561.2	4.50%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-40	-9.314e+01	0.0000	2669.0	8.69%	31755.3	6.63%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-39	-9.116e+01	0.0000	3231.0	10.51%	39645.3	8.28%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-39	-9.033e+01	0.0000	1748.0	5.69%	19449.2	4.06%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-38	-8.918e+01	0.0000	1815.0	5.91%	20384.1	4.26%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-38	-8.804e+01	0.0000	2142.0	6.97%	24818.4	5.18%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-38	-8.774e+01	0.0000	2198.0	7.15%	25590.1	5.34%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-37	-8.581e+01	0.0000	8187.0	26.64%	112021.1	23.39%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-37	-8.556e+01	0.0000	3597.0	11.71%	45119.4	9.42%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-36	-8.392e+01	0.0000	1840.0	5.99%	20939.4	4.37%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-35	-8.068e+01	0.0000	2402.0	7.82%	28721.3	6.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-34	-7.988e+01	0.0000	2196.0	7.15%	25939.0	5.42%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-34	-7.978e+01	0.0000	2088.0	6.79%	24473.6	5.11%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-33	-7.760e+01	0.0000	1943.0	6.32%	22609.3	4.72%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-33	-7.718e+01	0.0000	2252.0	7.33%	26841.5	5.60%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-33	-7.708e+01	0.0000	2383.0	7.75%	28647.9	5.98%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-33	-7.650e+01	0.0000	1686.0	5.49%	19200.8	4.01%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-33	-7.604e+01	0.0000	2183.0	7.10%	25953.6	5.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-32	-7.490e+01	0.0000	1999.0	6.51%	23498.0	4.91%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-32	-7.466e+01	0.0000	2005.0	6.52%	23591.4	4.93%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-31	-7.315e+01	0.0000	1780.0	5.79%	20613.9	4.30%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-30	-7.086e+01	0.0000	4774.0	15.54%	63037.4	13.16%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-30	-7.055e+01	0.0000	2588.0	8.42%	31853.0	6.65%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-30	-6.966e+01	0.0000	1316.0	4.28%	14573.3	3.04%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-29	-6.824e+01	0.0000	1530.0	4.98%	17474.9	3.65%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-29	-6.824e+01	0.0000	2314.0	7.53%	28174.0	5.88%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-29	-6.762e+01	0.0000	2480.0	8.07%	30516.5	6.37%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-29	-6.726e+01	0.0000	1045.0	3.40%	11131.5	2.32%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-28	-6.643e+01	0.0000	1544.0	5.02%	17742.8	3.71%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-28	-6.641e+01	0.0000	1548.0	5.04%	17797.6	3.72%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-28	-6.637e+01	0.0000	1390.0	4.52%	15687.2	3.28%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-28	-6.611e+01	0.0000	2996.0	9.75%	37860.3	7.91%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-27	-6.440e+01	0.0000	1977.0	6.43%	23729.2	4.96%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-27	-6.383e+01	0.0000	1538.0	5.00%	17780.6	3.71%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-26	-6.173e+01	0.0000	735.0	2.39%	7375.1	1.54%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-26	-6.170e+01	0.0000	1624.0	5.28%	19043.2	3.98%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-26	-6.129e+01	0.0000	1419.0	4.62%	16296.1	3.40%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-26	-6.009e+01	0.0000	1736.0	5.65%	20649.8	4.31%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-26	-6.007e+01	0.0000	1398.0	4.55%	16070.0	3.36%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-26	-6.006e+01	0.0000	980.0	3.19%	10549.7	2.20%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-25	-5.841e+01	0.0000	1298.0	4.22%	14805.0	3.09%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-25	-5.820e+01	0.0000	1762.0	5.73%	21103.4	4.41%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-25	-5.800e+01	0.0000	1663.0	5.41%	19758.5	4.13%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-24	-5.736e+01	0.0000	1231.0	4.01%	13956.6	2.91%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-24	-5.647e+01	0.0000	1837.0	5.98%	22228.1	4.64%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-24	-5.646e+01	0.0000	6964.0	22.66%	96669.8	20.19%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-24	-5.544e+01	0.0000	1210.0	3.94%	13759.4	2.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-23	-5.489e+01	0.0000	1492.0	4.86%	17584.6	3.67%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-23	-5.390e+01	0.0000	1199.0	3.90%	13680.5	2.86%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-22	-5.283e+01	0.0000	1173.0	3.82%	13380.3	2.79%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-22	-5.280e+01	0.0000	1347.0	4.38%	15720.7	3.28%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-22	-5.249e+01	0.0000	1283.0	4.18%	14871.7	3.11%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-22	-5.219e+01	0.0000	1031.0	3.36%	11521.1	2.41%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-22	-5.212e+01	0.0000	1638.0	5.33%	19724.2	4.12%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-22	-5.174e+01	0.0000	1393.0	4.53%	16395.8	3.42%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-22	-5.093e+01	0.0000	4696.0	15.28%	63628.5	13.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-21	-5.052e+01	0.0000	1555.0	5.06%	18670.8	3.90%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-21	-5.050e+01	0.0000	1822.0	5.93%	22359.9	4.67%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-21	-5.039e+01	0.0000	1502.0	4.89%	17950.7	3.75%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-21	-5.004e+01	0.0000	1573.0	5.12%	18943.1	3.96%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-21	-4.997e+01	0.0000	661.0	2.15%	6810.0	1.42%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-20	-4.812e+01	0.0000	1373.0	4.47%	16305.8	3.40%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-20	-4.720e+01	0.0000	1541.0	5.01%	18658.3	3.90%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-20	-4.655e+01	0.0000	864.0	2.81%	9550.2	1.99%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-20	-4.618e+01	0.0000	1160.0	3.77%	13510.0	2.82%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-19	-4.544e+01	0.0000	527.0	1.71%	5268.4	1.10%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-19	-4.524e+01	0.0000	838.0	2.73%	9261.1	1.93%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-19	-4.520e+01	0.0000	1181.0	3.84%	13841.6	2.89%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-19	-4.414e+01	0.0000	709.0	2.31%	7622.9	1.59%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-19	-4.399e+01	0.0000	845.0	2.75%	9404.0	1.96%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-19	-4.376e+01	0.0000	796.0	2.59%	8769.9	1.83%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-18	-4.317e+01	0.0000	886.0	2.88%	9979.9	2.08%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.227e+01	0.0000	603.0	1.96%	6326.8	1.32%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-18	-4.227e+01	0.0000	603.0	1.96%	6326.8	1.32%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-18	-4.222e+01	0.0000	1131.0	3.68%	13310.9	2.78%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-17	-4.086e+01	0.0000	1274.0	4.15%	15333.6	3.20%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-17	-4.071e+01	0.0000	1088.0	3.54%	12802.5	2.67%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-17	-3.986e+01	0.0000	680.0	2.21%	7405.7	1.55%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-17	-3.921e+01	0.0000	1143.0	3.72%	13627.3	2.85%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-16	-3.905e+01	0.0000	2166.0	7.05%	27960.2	5.84%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-16	-3.851e+01	0.0000	654.0	2.13%	7118.2	1.49%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-16	-3.773e+01	0.0000	612.0	1.99%	6602.0	1.38%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-16	-3.736e+01	0.0000	1070.0	3.48%	12727.4	2.66%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-15	-3.641e+01	0.0000	1238.0	4.03%	15085.7	3.15%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-15	-3.613e+01	0.0000	1581.0	5.14%	19883.5	4.15%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-15	-3.519e+01	0.0000	919.0	2.99%	10785.3	2.25%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-15	-3.469e+01	0.0000	746.0	2.43%	8485.4	1.77%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-14	-3.379e+01	0.0000	608.0	1.98%	6700.4	1.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-14	-3.355e+01	0.0000	810.0	2.64%	9393.5	1.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-14	-3.351e+01	0.0000	1008.0	3.28%	12083.6	2.52%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-13	-3.217e+01	0.0000	4942.0	16.08%	69312.0	14.47%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-13	-3.214e+01	0.0000	460.0	1.50%	4845.4	1.01%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-13	-3.200e+01	0.0000	620.0	2.02%	6930.7	1.45%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-13	-3.179e+01	0.0000	785.0	2.55%	9140.5	1.91%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-13	-3.150e+01	0.0000	1282.0	4.17%	15993.9	3.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-13	-3.118e+01	0.0000	703.0	2.29%	8068.5	1.68%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-13	-3.075e+01	0.0000	610.0	1.99%	6850.8	1.43%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-13	-3.072e+01	0.0000	769.0	2.50%	8976.7	1.87%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-12	-2.993e+01	0.0000	888.0	2.89%	10633.2	2.22%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-12	-2.883e+01	0.0000	781.0	2.54%	9232.3	1.93%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-12	-2.764e+01	0.0000	1522.0	4.95%	19649.0	4.10%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-11	-2.714e+01	0.0000	1538.0	5.00%	19914.2	4.16%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-11	-2.647e+01	0.0000	772.0	2.51%	9232.9	1.93%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-11	-2.616e+01	0.0000	5807.0	18.90%	83114.8	17.36%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-11	-2.585e+01	0.0000	2743.0	8.93%	37494.2	7.83%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-11	-2.558e+01	0.0000	3005.0	9.78%	41376.0	8.64%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-10	-2.524e+01	0.0000	540.0	1.76%	6159.6	1.29%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-10	-2.487e+01	0.0000	832.0	2.71%	10144.1	2.12%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-10	-2.477e+01	0.0000	582.0	1.89%	6742.4	1.41%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-10	-2.368e+01	0.0000	5284.0	17.19%	75615.0	15.79%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-9	-2.253e+01	0.0000	746.0	2.43%	9093.1	1.90%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e-9	-2.240e+01	0.0000	580.0	1.89%	6830.6	1.43%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-9	-2.129e+01	0.0000	545.0	1.77%	6411.2	1.34%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-8	-2.031e+01	0.0000	162.0	0.53%	1489.1	0.31%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-7	-1.811e+01	0.0000	942.0	3.07%	12128.6	2.53%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-7	-1.789e+01	0.0000	421.0	1.37%	4903.1	1.02%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-7	-1.745e+01	0.0000	701.0	2.28%	8779.9	1.83%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-7	-1.706e+01	0.0000	489.0	1.59%	5868.7	1.23%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-7	-1.688e+01	0.0000	435.0	1.42%	5142.8	1.07%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-7	-1.669e+01	0.0000	781.0	2.54%	9954.5	2.08%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-6	-1.544e+01	0.0000	520.0	1.69%	6386.3	1.33%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-6	-1.490e+01	0.0000	429.0	1.40%	5164.6	1.08%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-6	-1.481e+01	0.0000	585.0	1.90%	7329.4	1.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-6	-1.462e+01	0.0000	374.0	1.22%	4429.5	0.92%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-6	-1.416e+01	0.0000	508.0	1.65%	6297.6	1.32%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-5	-1.374e+01	0.0000	321.0	1.04%	3755.4	0.78%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-5	-1.281e+01	0.0000	559.0	1.82%	7099.0	1.48%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-5	-1.265e+01	0.0000	910.0	2.96%	12122.9	2.53%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-1.144e+01	0.0000	376.0	1.22%	4631.3	0.97%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e-4	-9.896e+00	0.0001	63.0	0.21%	559.4	0.12%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-4	-9.572e+00	0.0001	186.0	0.61%	2136.0	0.45%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-3	-8.831e+00	0.0002	798.0	2.60%	10873.2	2.27%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-3	-8.787e+00	0.0002	175.0	0.57%	2024.1	0.42%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-3	-8.380e+00	0.0002	329.0	1.07%	4169.4	0.87%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-3	-8.021e+00	0.0004	680.0	2.21%	9238.3	1.93%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-3	-7.459e+00	0.0006	169.0	0.55%	2006.4	0.42%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-3	-7.288e+00	0.0007	146.0	0.48%	1703.0	0.36%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-6.736e+00	0.0013	30727.0	99.99%	478682.2	99.96%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-2	-6.480e+00	0.0016	305.0	0.99%	3966.6	0.83%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-6.468e+00	0.0017	219.0	0.71%	2752.5	0.57%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.856e+00	0.0030	3684.0	11.99%	54906.3	11.47%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-2	-5.730e+00	0.0034	185.0	0.60%	2323.7	0.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-2	-5.545e+00	0.0041	1944.0	6.33%	28497.1	5.95%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e-2	-5.398e+00	0.0048	46.0	0.15%	463.4	0.10%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-2	-5.385e+00	0.0048	618.0	2.01%	8630.0	1.80%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-2	-5.345e+00	0.0050	73.0	0.24%	812.5	0.17%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-2	-5.017e+00	0.0069	146.0	0.48%	1822.8	0.38%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-2	-4.709e+00	0.0094	111.0	0.36%	1354.4	0.28%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-1	-4.381e+00	0.0130	45.0	0.15%	481.6	0.10%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-1	-3.622e+00	0.0277	743.0	2.42%	10756.3	2.25%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.182e+00	0.0429	90.0	0.29%	1149.2	0.24%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e-1	-2.745e+00	0.0663	54.0	0.18%	669.4	0.14%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.515e+00	0.0832	94.0	0.31%	1252.6	0.26%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.742e+00	0.1799	30730.0	100.00%	478859.9	99.99%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.057e+00	0.3557	30730.0	100.00%	478870.1	100.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-7.560e-01	0.4794	30.0	0.10%	455.6	0.10%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.617e-01	0.8664	5.0	0.02%	114.2	0.02%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.244e-01	0.8969	30730.0	100.00%	478885.5	100.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.200e-01	0.8985	42.0	0.14%	782.0	0.16%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-9.891e-02	0.9153	506.0	1.65%	8360.7	1.75%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-0.000e+00	1.0000	635.0	2.07%	17152.2	3.58%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	30730.0	100.00%	478887.9	100.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	0.000e+00	1.0000	3763.0	12.25%	152193.9	31.78%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	0.000e+00	1.0000	4787.0	15.58%	171121.5	35.73%