Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 34062)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 482085)	% of Background Sequences with Motif
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-105	-2.423e+02	0.0000	2197.0	6.45%	18608.5	3.86%
SeqBias: GA-repeat	GAGAGAGAGA	1e-14	-3.334e+01	0.0000	30130.0	88.45%	419851.1	87.00%
SeqBias: CG bias	SSSSSSSSSS	1e-5	-1.338e+01	0.0002	32525.0	95.48%	458024.1	94.91%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-4	-1.050e+01	0.0027	28813.0	84.58%	404164.5	83.75%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-2	-6.766e+00	0.0892	938.0	2.75%	11976.6	2.48%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-2	-6.635e+00	0.0892	5273.0	15.48%	71779.3	14.87%
SeqBias: CA-repeat	CACACACACA	1e-2	-5.665e+00	0.1916	27339.0	80.25%	384350.1	79.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-3.942e+00	0.9386	3218.0	9.45%	43963.7	9.11%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-3.863e+00	0.9386	33771.0	99.13%	477865.1	99.02%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-3.176e+00	1.0000	29668.0	87.09%	418691.9	86.76%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-3.176e+00	1.0000	409.0	1.20%	5293.5	1.10%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-2.797e+00	1.0000	34066.0	100.00%	482543.6	99.99%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.585e+00	1.0000	34063.0	99.99%	482481.9	99.98%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-2.401e+00	1.0000	22407.0	65.78%	315694.4	65.42%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-1	-2.353e+00	1.0000	1027.0	3.01%	13945.1	2.89%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.046e+00	1.0000	34066.0	100.00%	482554.9	99.99%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.821e+00	1.0000	4004.0	11.75%	55859.8	11.58%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.795e+00	1.0000	1315.0	3.86%	18122.3	3.76%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.662e+00	1.0000	887.0	2.60%	12186.0	2.53%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.596e+00	1.0000	2814.0	8.26%	39241.7	8.13%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.530e+00	1.0000	7226.0	21.21%	101493.0	21.03%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.516e+00	1.0000	264.0	0.77%	3554.6	0.74%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.510e+00	1.0000	327.0	0.96%	4427.1	0.92%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.496e+00	1.0000	8418.0	24.71%	118360.5	24.53%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.454e+00	1.0000	333.0	0.98%	4521.2	0.94%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.443e+00	1.0000	31.0	0.09%	378.0	0.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.335e+00	1.0000	4832.0	14.18%	67848.1	14.06%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.324e+00	1.0000	114.0	0.33%	1514.9	0.31%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-1.308e+00	1.0000	7237.0	21.24%	101838.9	21.10%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.289e+00	1.0000	5470.0	16.06%	76892.9	15.93%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.284e+00	1.0000	136.0	0.40%	1822.0	0.38%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.275e+00	1.0000	505.0	1.48%	6960.0	1.44%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.204e+00	1.0000	324.0	0.95%	4448.8	0.92%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.180e+00	1.0000	11429.0	33.55%	161255.5	33.41%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.172e+00	1.0000	166.0	0.49%	2255.0	0.47%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.167e+00	1.0000	24677.0	72.44%	348974.9	72.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.166e+00	1.0000	3143.0	9.23%	44135.9	9.15%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.154e+00	1.0000	1209.0	3.55%	16882.6	3.50%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.120e+00	1.0000	149.0	0.44%	2026.3	0.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.107e+00	1.0000	354.0	1.04%	4890.7	1.01%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.075e+00	1.0000	1841.0	5.40%	25825.9	5.35%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.068e+00	1.0000	1595.0	4.68%	22360.1	4.63%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.056e+00	1.0000	624.0	1.83%	8694.0	1.80%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.043e+00	1.0000	2429.0	7.13%	34141.8	7.07%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.006e+00	1.0000	2001.0	5.87%	28123.9	5.83%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-9.621e-01	1.0000	11499.0	33.76%	162506.1	33.67%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.404e-01	1.0000	7346.0	21.56%	103749.1	21.50%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.388e-01	1.0000	1747.0	5.13%	24578.7	5.09%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.903e-01	1.0000	486.0	1.43%	6807.6	1.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-8.903e-01	1.0000	486.0	1.43%	6807.6	1.41%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-8.863e-01	1.0000	4930.0	14.47%	69622.7	14.43%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.817e-01	1.0000	1442.0	4.23%	20304.3	4.21%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-8.688e-01	1.0000	2454.0	7.20%	34616.6	7.17%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-8.546e-01	1.0000	675.0	1.98%	9486.3	1.97%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-8.507e-01	1.0000	6270.0	18.41%	88624.0	18.36%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-8.446e-01	1.0000	10627.0	31.20%	150315.1	31.15%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.426e-01	1.0000	17503.0	51.38%	247706.3	51.33%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-8.425e-01	1.0000	929.0	2.73%	13079.0	2.71%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-8.351e-01	1.0000	69.0	0.20%	952.0	0.20%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-8.226e-01	1.0000	491.0	1.44%	6901.6	1.43%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-8.175e-01	1.0000	1254.0	3.68%	17684.8	3.66%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.965e-01	1.0000	12561.0	36.87%	177773.0	36.84%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.960e-01	1.0000	7311.0	21.46%	103426.5	21.43%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-7.946e-01	1.0000	1225.0	3.60%	17287.0	3.58%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-7.921e-01	1.0000	4671.0	13.71%	66054.4	13.69%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-7.905e-01	1.0000	4756.0	13.96%	67259.2	13.94%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.825e-01	1.0000	20614.0	60.51%	291871.7	60.48%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.554e-01	1.0000	2402.0	7.05%	33969.7	7.04%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-7.490e-01	1.0000	12026.0	35.30%	170267.9	35.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.459e-01	1.0000	4589.0	13.47%	64943.5	13.46%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.412e-01	1.0000	1410.0	4.14%	19937.6	4.13%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.292e-01	1.0000	1138.0	3.34%	16094.2	3.33%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.240e-01	1.0000	6908.0	20.28%	97812.3	20.27%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.085e-01	1.0000	7619.0	22.37%	107904.1	22.36%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.773e-01	1.0000	9392.0	27.57%	133066.2	27.57%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.696e-01	1.0000	20509.0	60.20%	290565.9	60.21%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.654e-01	1.0000	21403.0	62.83%	303236.0	62.84%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.582e-01	1.0000	4844.0	14.22%	68657.5	14.23%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.377e-01	1.0000	666.0	1.96%	9456.8	1.96%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-6.097e-01	1.0000	474.0	1.39%	6744.6	1.40%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.878e-01	1.0000	15913.0	46.71%	225607.8	46.75%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.807e-01	1.0000	4691.0	13.77%	66587.4	13.80%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.795e-01	1.0000	48.0	0.14%	690.4	0.14%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.741e-01	1.0000	142.0	0.42%	2034.7	0.42%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.688e-01	1.0000	597.0	1.75%	8511.2	1.76%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.667e-01	1.0000	1162.0	3.41%	16539.8	3.43%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.658e-01	1.0000	599.0	1.76%	8541.6	1.77%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.636e-01	1.0000	1518.0	4.46%	21596.8	4.48%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-5.377e-01	1.0000	2021.0	5.93%	28761.0	5.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-5.369e-01	1.0000	140.0	0.41%	2015.1	0.42%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-5.300e-01	1.0000	1809.0	5.31%	25757.6	5.34%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.259e-01	1.0000	63.0	0.18%	914.9	0.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.141e-01	1.0000	378.0	1.11%	5420.8	1.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.123e-01	1.0000	1020.0	2.99%	14560.1	3.02%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-5.090e-01	1.0000	358.0	1.05%	5137.9	1.06%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.913e-01	1.0000	2069.0	6.07%	29488.6	6.11%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-4.844e-01	1.0000	1565.0	4.59%	22332.4	4.63%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.828e-01	1.0000	739.0	2.17%	10581.6	2.19%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-4.808e-01	1.0000	1527.0	4.48%	21795.6	4.52%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.652e-01	1.0000	5589.0	16.41%	79496.5	16.47%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-4.592e-01	1.0000	1195.0	3.51%	17091.1	3.54%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.554e-01	1.0000	5955.0	17.48%	84706.4	17.55%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.542e-01	1.0000	4540.0	13.33%	64626.1	13.39%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.505e-01	1.0000	1270.0	3.73%	18166.5	3.76%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-4.468e-01	1.0000	1567.0	4.60%	22396.2	4.64%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-4.467e-01	1.0000	2592.0	7.61%	36970.8	7.66%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-4.433e-01	1.0000	13296.0	39.03%	188826.1	39.13%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-4.363e-01	1.0000	1878.0	5.51%	26831.0	5.56%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.317e-01	1.0000	3103.0	9.11%	44251.3	9.17%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.235e-01	1.0000	5543.0	16.27%	78915.8	16.35%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.233e-01	1.0000	669.0	1.96%	9622.1	1.99%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-4.171e-01	1.0000	406.0	1.19%	5867.4	1.22%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-4.116e-01	1.0000	3000.0	8.81%	42815.5	8.87%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.098e-01	1.0000	1990.0	5.84%	28454.1	5.90%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.956e-01	1.0000	42.0	0.12%	633.6	0.13%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.948e-01	1.0000	92.0	0.27%	1363.0	0.28%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.871e-01	1.0000	2157.0	6.33%	30858.6	6.39%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-3.853e-01	1.0000	8.0	0.02%	128.9	0.03%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.783e-01	1.0000	624.0	1.83%	9010.7	1.87%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.777e-01	1.0000	5773.0	16.95%	82266.5	17.05%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-3.731e-01	1.0000	17682.0	51.91%	251143.3	52.04%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.676e-01	1.0000	1688.0	4.96%	24203.2	5.02%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-3.654e-01	1.0000	3034.0	8.91%	43366.4	8.99%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.582e-01	1.0000	10448.0	30.67%	148652.3	30.80%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.525e-01	1.0000	312.0	0.92%	4553.4	0.94%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.513e-01	1.0000	1041.0	3.06%	14992.5	3.11%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.511e-01	1.0000	10372.0	30.45%	147592.8	30.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.500e-01	1.0000	542.0	1.59%	7856.0	1.63%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-3.448e-01	1.0000	3099.0	9.10%	44323.2	9.18%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.439e-01	1.0000	1296.0	3.80%	18640.3	3.86%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.385e-01	1.0000	29.0	0.09%	451.9	0.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-3.315e-01	1.0000	898.0	2.64%	12967.1	2.69%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.307e-01	1.0000	6217.0	18.25%	88670.7	18.37%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.298e-01	1.0000	850.0	2.50%	12282.5	2.55%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.276e-01	1.0000	400.0	1.17%	5833.1	1.21%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-3.208e-01	1.0000	9075.0	26.64%	129269.4	26.79%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.198e-01	1.0000	811.0	2.38%	11733.7	2.43%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-3.171e-01	1.0000	2403.0	7.05%	34458.6	7.14%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-3.166e-01	1.0000	619.0	1.82%	8985.4	1.86%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.965e-01	1.0000	663.0	1.95%	9633.7	2.00%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.965e-01	1.0000	2315.0	6.80%	33236.6	6.89%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.960e-01	1.0000	477.0	1.40%	6962.2	1.44%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.958e-01	1.0000	849.0	2.49%	12300.9	2.55%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-2.920e-01	1.0000	557.0	1.64%	8115.1	1.68%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.920e-01	1.0000	3038.0	8.92%	43545.3	9.02%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.890e-01	1.0000	952.0	2.79%	13782.5	2.86%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.827e-01	1.0000	3398.0	9.97%	48689.4	10.09%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.806e-01	1.0000	3524.0	10.34%	50488.0	10.46%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.797e-01	1.0000	3146.0	9.24%	45106.9	9.35%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.781e-01	1.0000	10379.0	30.47%	147893.9	30.65%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.778e-01	1.0000	3013.0	8.84%	43215.9	8.96%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.766e-01	1.0000	3833.0	11.25%	54894.3	11.38%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.728e-01	1.0000	34066.0	100.00%	482580.3	100.00%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.700e-01	1.0000	839.0	2.46%	12183.0	2.52%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.700e-01	1.0000	649.0	1.91%	9456.3	1.96%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.659e-01	1.0000	86.0	0.25%	1314.3	0.27%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.621e-01	1.0000	648.0	1.90%	9449.3	1.96%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.607e-01	1.0000	4275.0	12.55%	61220.1	12.69%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.566e-01	1.0000	2110.0	6.19%	30377.1	6.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.509e-01	1.0000	2851.0	8.37%	40958.4	8.49%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-2.491e-01	1.0000	973.0	2.86%	14128.5	2.93%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.491e-01	1.0000	5412.0	15.89%	77425.3	16.04%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.391e-01	1.0000	2944.0	8.64%	42309.0	8.77%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.374e-01	1.0000	530.0	1.56%	7774.6	1.61%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.371e-01	1.0000	3426.0	10.06%	49183.6	10.19%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.369e-01	1.0000	4353.0	12.78%	62387.8	12.93%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.273e-01	1.0000	6750.0	19.81%	96512.5	20.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.246e-01	1.0000	17146.0	50.33%	244018.6	50.56%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.211e-01	1.0000	2622.0	7.70%	37752.7	7.82%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.182e-01	1.0000	8561.0	25.13%	122276.6	25.34%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.125e-01	1.0000	1910.0	5.61%	27598.6	5.72%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-2.119e-01	1.0000	1521.0	4.46%	22033.9	4.57%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.116e-01	1.0000	2882.0	8.46%	41483.9	8.60%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-2.061e-01	1.0000	1032.0	3.03%	15031.6	3.11%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.057e-01	1.0000	1470.0	4.32%	21313.8	4.42%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-2.027e-01	1.0000	5408.0	15.88%	77499.7	16.06%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.984e-01	1.0000	2663.0	7.82%	38387.8	7.95%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.949e-01	1.0000	4761.0	13.98%	68311.6	14.16%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.939e-01	1.0000	472.0	1.39%	6979.3	1.45%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.939e-01	1.0000	1649.0	4.84%	23898.4	4.95%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.932e-01	1.0000	13352.0	39.19%	190371.3	39.45%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.930e-01	1.0000	852.0	2.50%	12463.0	2.58%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.922e-01	1.0000	3110.0	9.13%	44783.4	9.28%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.919e-01	1.0000	3477.0	10.21%	50020.1	10.37%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-1.895e-01	1.0000	3337.0	9.80%	48029.8	9.95%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.859e-01	1.0000	277.0	0.81%	4155.0	0.86%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.829e-01	1.0000	1567.0	4.60%	22744.7	4.71%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.790e-01	1.0000	1791.0	5.26%	25961.4	5.38%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.787e-01	1.0000	8146.0	23.91%	116524.3	24.15%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.770e-01	1.0000	3415.0	10.02%	49176.6	10.19%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.712e-01	1.0000	2037.0	5.98%	29500.9	6.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.656e-01	1.0000	82.0	0.24%	1297.2	0.27%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.649e-01	1.0000	5620.0	16.50%	80643.5	16.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.611e-01	1.0000	8901.0	26.13%	127327.1	26.38%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.610e-01	1.0000	994.0	2.92%	14555.7	3.02%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.610e-01	1.0000	4247.0	12.47%	61093.2	12.66%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.608e-01	1.0000	2618.0	7.69%	37837.9	7.84%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.608e-01	1.0000	1875.0	5.50%	27204.8	5.64%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.585e-01	1.0000	849.0	2.49%	12470.9	2.58%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.543e-01	1.0000	7654.0	22.47%	109629.5	22.72%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.543e-01	1.0000	554.0	1.63%	8213.1	1.70%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.519e-01	1.0000	2339.0	6.87%	33870.8	7.02%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.452e-01	1.0000	1016.0	2.98%	14900.5	3.09%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.444e-01	1.0000	1435.0	4.21%	20929.3	4.34%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.429e-01	1.0000	10970.0	32.20%	156803.6	32.49%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.410e-01	1.0000	8703.0	25.55%	124605.6	25.82%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.364e-01	1.0000	4568.0	13.41%	65759.6	13.63%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.349e-01	1.0000	1278.0	3.75%	18693.7	3.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.348e-01	1.0000	1272.0	3.73%	18607.4	3.86%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.347e-01	1.0000	1088.0	3.19%	15958.7	3.31%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.337e-01	1.0000	7863.0	23.08%	112696.6	23.35%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.327e-01	1.0000	1979.0	5.81%	28765.5	5.96%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.290e-01	1.0000	408.0	1.20%	6125.2	1.27%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.252e-01	1.0000	757.0	2.22%	11198.4	2.32%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.228e-01	1.0000	1976.0	5.80%	28750.3	5.96%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.214e-01	1.0000	358.0	1.05%	5405.2	1.12%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.164e-01	1.0000	2437.0	7.15%	35379.5	7.33%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.123e-01	1.0000	18754.0	55.05%	267341.2	55.40%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.109e-01	1.0000	8244.0	24.20%	118236.4	24.50%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.091e-01	1.0000	1453.0	4.27%	21275.1	4.41%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.088e-01	1.0000	1962.0	5.76%	28593.0	5.92%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.979e-02	1.0000	7813.0	22.93%	112169.2	23.24%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-9.839e-02	1.0000	1347.0	3.95%	19779.6	4.10%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-9.796e-02	1.0000	9145.0	26.84%	131130.4	27.17%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-9.374e-02	1.0000	2514.0	7.38%	36567.0	7.58%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-9.242e-02	1.0000	2907.0	8.53%	42204.4	8.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.806e-02	1.0000	1030.0	3.02%	15232.8	3.16%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.740e-02	1.0000	34.0	0.10%	603.6	0.13%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-8.653e-02	1.0000	318.0	0.93%	4869.1	1.01%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.479e-02	1.0000	4916.0	14.43%	70969.0	14.71%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.141e-02	1.0000	635.0	1.86%	9518.1	1.97%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-8.129e-02	1.0000	2150.0	6.31%	31393.8	6.51%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.914e-02	1.0000	1468.0	4.31%	21586.6	4.47%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.912e-02	1.0000	1367.0	4.01%	20129.3	4.17%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-7.799e-02	1.0000	936.0	2.75%	13900.8	2.88%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.620e-02	1.0000	1656.0	4.86%	24307.9	5.04%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.458e-02	1.0000	3178.0	9.33%	46173.7	9.57%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-7.428e-02	1.0000	10614.0	31.16%	152191.7	31.54%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-7.300e-02	1.0000	5192.0	15.24%	74984.3	15.54%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.261e-02	1.0000	17128.0	50.28%	244626.5	50.69%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-7.196e-02	1.0000	1136.0	3.33%	16816.2	3.48%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-7.168e-02	1.0000	4327.0	12.70%	62635.0	12.98%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.812e-02	1.0000	6408.0	18.81%	92371.5	19.14%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.806e-02	1.0000	672.0	1.97%	10092.7	2.09%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.601e-02	1.0000	650.0	1.91%	9777.9	2.03%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.420e-02	1.0000	496.0	1.46%	7530.9	1.56%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.403e-02	1.0000	13006.0	38.18%	186262.2	38.60%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.165e-02	1.0000	458.0	1.34%	6979.9	1.45%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.732e-02	1.0000	5612.0	16.47%	81100.2	16.81%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.701e-02	1.0000	8058.0	23.65%	115984.2	24.03%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-5.508e-02	1.0000	3999.0	11.74%	58057.8	12.03%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-5.481e-02	1.0000	582.0	1.71%	8817.1	1.83%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.345e-02	1.0000	1179.0	3.46%	17512.0	3.63%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.284e-02	1.0000	3374.0	9.90%	49119.0	10.18%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.124e-02	1.0000	6718.0	19.72%	96941.4	20.09%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.671e-02	1.0000	844.0	2.48%	12674.6	2.63%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.629e-02	1.0000	464.0	1.36%	7112.6	1.47%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-4.558e-02	1.0000	2552.0	7.49%	37369.2	7.74%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-4.395e-02	1.0000	4028.0	11.82%	58566.8	12.14%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-4.352e-02	1.0000	3462.0	10.16%	50456.6	10.46%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-4.304e-02	1.0000	323.0	0.95%	5037.4	1.04%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.217e-02	1.0000	5705.0	16.75%	82575.0	17.11%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.101e-02	1.0000	12286.0	36.07%	176314.5	36.54%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-3.754e-02	1.0000	407.0	1.19%	6302.0	1.31%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.724e-02	1.0000	4290.0	12.59%	62387.4	12.93%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.556e-02	1.0000	2728.0	8.01%	39984.3	8.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-3.415e-02	1.0000	1458.0	4.28%	21666.4	4.49%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.399e-02	1.0000	1521.0	4.46%	22580.7	4.68%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.322e-02	1.0000	484.0	1.42%	7457.5	1.55%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.304e-02	1.0000	4549.0	13.35%	66146.1	13.71%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.261e-02	1.0000	14573.0	42.78%	208916.4	43.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.156e-02	1.0000	2364.0	6.94%	34780.0	7.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.069e-02	1.0000	3413.0	10.02%	49882.8	10.34%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-3.016e-02	1.0000	4684.0	13.75%	68117.3	14.12%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.946e-02	1.0000	432.0	1.27%	6705.2	1.39%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.946e-02	1.0000	5385.0	15.81%	78161.0	16.20%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.934e-02	1.0000	378.0	1.11%	5904.7	1.22%
SeqBias: TA-repeat	TATATATATA	1e0	-2.863e-02	1.0000	13736.0	40.32%	197114.3	40.85%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.805e-02	1.0000	6888.0	20.22%	99663.8	20.65%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-2.803e-02	1.0000	6029.0	17.70%	87392.6	18.11%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.606e-02	1.0000	7603.0	22.32%	109904.0	22.77%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-2.590e-02	1.0000	2860.0	8.40%	41988.6	8.70%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.573e-02	1.0000	3066.0	9.00%	44955.8	9.32%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.178e-02	1.0000	23.0	0.07%	482.2	0.10%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.081e-02	1.0000	4442.0	13.04%	64795.2	13.43%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.033e-02	1.0000	4982.0	14.62%	72545.1	15.03%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.014e-02	1.0000	3115.0	9.14%	45741.7	9.48%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.844e-02	1.0000	2378.0	6.98%	35141.2	7.28%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.785e-02	1.0000	1144.0	3.36%	17246.5	3.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.718e-02	1.0000	11844.0	34.77%	170514.4	35.33%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.677e-02	1.0000	6835.0	20.06%	99139.5	20.54%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.658e-02	1.0000	1311.0	3.85%	19697.5	4.08%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.595e-02	1.0000	5991.0	17.59%	87091.8	18.05%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.587e-02	1.0000	14068.0	41.30%	202151.3	41.89%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.586e-02	1.0000	7079.0	20.78%	102650.4	21.27%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.577e-02	1.0000	11420.0	33.52%	164528.6	34.09%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.562e-02	1.0000	2239.0	6.57%	33178.9	6.88%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.460e-02	1.0000	2545.0	7.47%	37621.0	7.80%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.409e-02	1.0000	9659.0	28.35%	139514.2	28.91%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.402e-02	1.0000	1367.0	4.01%	20550.0	4.26%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.289e-02	1.0000	8098.0	23.77%	117294.2	24.31%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.252e-02	1.0000	1581.0	4.64%	23690.1	4.91%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.219e-02	1.0000	5025.0	14.75%	73358.1	15.20%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.197e-02	1.0000	17315.0	50.83%	248336.9	51.46%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.177e-02	1.0000	1013.0	2.97%	15410.4	3.19%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.140e-02	1.0000	10801.0	31.71%	155880.5	32.30%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.112e-02	1.0000	10226.0	30.02%	147704.3	30.61%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.088e-02	1.0000	5743.0	16.86%	83693.8	17.34%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.083e-02	1.0000	1702.0	5.00%	25483.5	5.28%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.063e-02	1.0000	4548.0	13.35%	66562.1	13.79%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.054e-02	1.0000	124.0	0.36%	2153.5	0.45%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.017e-02	1.0000	2256.0	6.62%	33538.6	6.95%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.632e-03	1.0000	5798.0	17.02%	84528.7	17.52%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-9.625e-03	1.0000	5457.0	16.02%	79641.9	16.50%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-9.176e-03	1.0000	1086.0	3.19%	16526.3	3.42%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-8.538e-03	1.0000	1002.0	2.94%	15306.7	3.17%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.402e-03	1.0000	6069.0	17.82%	88511.3	18.34%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.998e-03	1.0000	8617.0	25.30%	124969.5	25.90%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.746e-03	1.0000	7088.0	20.81%	103135.4	21.37%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.692e-03	1.0000	701.0	2.06%	10904.3	2.26%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.679e-03	1.0000	1464.0	4.30%	22119.4	4.58%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.200e-03	1.0000	5900.0	17.32%	86155.1	17.85%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-5.907e-03	1.0000	5341.0	15.68%	78154.3	16.19%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.727e-03	1.0000	5054.0	14.84%	74044.9	15.34%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-5.555e-03	1.0000	12705.0	37.30%	183305.9	37.98%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.199e-03	1.0000	11048.0	32.43%	159758.9	33.10%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.107e-03	1.0000	14529.0	42.65%	209255.3	43.36%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.069e-03	1.0000	10064.0	29.54%	145749.2	30.20%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.809e-03	1.0000	5591.0	16.41%	81814.3	16.95%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.752e-03	1.0000	9887.0	29.02%	143253.7	29.68%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.279e-03	1.0000	10365.0	30.43%	150112.5	31.11%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.321e-03	1.0000	1534.0	4.50%	23281.6	4.82%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.259e-03	1.0000	3079.0	9.04%	45752.7	9.48%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.107e-03	1.0000	3344.0	9.82%	49598.9	10.28%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.582e-03	1.0000	7066.0	20.74%	103182.9	21.38%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.370e-03	1.0000	3752.0	11.01%	55568.7	11.51%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.552e-03	1.0000	13557.0	39.80%	195968.8	40.61%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.461e-03	1.0000	1745.0	5.12%	26528.8	5.50%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.350e-03	1.0000	7935.0	23.29%	115856.7	24.01%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.269e-03	1.0000	1496.0	4.39%	22901.2	4.75%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.145e-03	1.0000	2665.0	7.82%	40001.1	8.29%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.049e-03	1.0000	4432.0	13.01%	65612.0	13.60%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-9.960e-04	1.0000	3756.0	11.03%	55858.3	11.57%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-9.700e-04	1.0000	7488.0	21.98%	109568.0	22.70%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-9.440e-04	1.0000	8979.0	26.36%	130917.9	27.13%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-8.800e-04	1.0000	3576.0	10.50%	53284.3	11.04%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-8.280e-04	1.0000	4800.0	14.09%	70987.4	14.71%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-8.240e-04	1.0000	6798.0	19.96%	99727.8	20.67%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.130e-04	1.0000	5276.0	15.49%	77852.4	16.13%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.250e-04	1.0000	11430.0	33.55%	166051.6	34.41%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.240e-04	1.0000	1937.0	5.69%	29534.3	6.12%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-5.080e-04	1.0000	654.0	1.92%	10530.7	2.18%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-4.970e-04	1.0000	10925.0	32.07%	158934.4	32.93%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-4.100e-04	1.0000	10083.0	29.60%	146985.5	30.46%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.480e-04	1.0000	11953.0	35.09%	173716.2	36.00%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-3.450e-04	1.0000	5452.0	16.00%	80632.8	16.71%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.970e-04	1.0000	3555.0	10.44%	53241.2	11.03%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.900e-04	1.0000	3820.0	11.21%	57091.8	11.83%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.790e-04	1.0000	3242.0	9.52%	48708.8	10.09%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.740e-04	1.0000	5613.0	16.48%	83139.1	17.23%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.590e-04	1.0000	11466.0	33.66%	167045.1	34.61%
Tal1	CATCTG	1e0	-1.550e-04	1.0000	8505.0	24.97%	124731.8	25.85%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.700e-05	1.0000	619.0	1.82%	10187.3	2.11%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-8.600e-05	1.0000	2433.0	7.14%	37137.2	7.70%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.600e-05	1.0000	4106.0	12.05%	61551.7	12.75%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.100e-05	1.0000	5101.0	14.97%	76013.0	15.75%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-4.800e-05	1.0000	10994.0	32.27%	160692.7	33.30%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.800e-05	1.0000	5864.0	17.21%	87337.5	18.10%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-8.000e-06	1.0000	6474.0	19.00%	96331.2	19.96%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.000e-06	1.0000	4302.0	12.63%	64876.6	13.44%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.000e-06	1.0000	5965.0	17.51%	89085.7	18.46%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.000e-06	1.0000	12392.0	36.38%	181492.5	37.61%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.000e-06	1.0000	7607.0	22.33%	113078.9	23.43%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.000e-06	1.0000	4962.0	14.57%	74839.5	15.51%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.000e-06	1.0000	3997.0	11.73%	60811.6	12.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	3560.0	10.45%	54595.4	11.31%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-0.000e+00	1.0000	5002.0	14.68%	75691.3	15.68%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-0.000e+00	1.0000	5976.0	17.54%	89849.9	18.62%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-0.000e+00	1.0000	11677.0	34.28%	171931.9	35.63%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-0.000e+00	1.0000	18484.0	54.26%	269024.8	55.75%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	2744.0	8.05%	42925.2	8.89%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-0.000e+00	1.0000	6408.0	18.81%	97116.3	20.12%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	408.0	1.20%	7692.5	1.59%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	9877.0	28.99%	156633.1	32.46%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	11327.0	33.25%	177997.2	36.88%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-0.000e+00	1.0000	2288.0	6.72%	37192.5	7.71%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	34066.0	100.00%	482584.7	100.00%