Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 63226)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 483309)	% of Background Sequences with Motif
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-255	-5.879e+02	0.0000	29160.0	46.12%	188490.6	39.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-163	-3.762e+02	0.0000	25529.0	40.37%	168248.1	34.81%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-80	-1.861e+02	0.0000	3900.0	6.17%	21279.5	4.40%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-23	-5.445e+01	0.0000	8763.0	13.86%	60035.7	12.42%
SeqBias: GA-repeat	GAGAGAGAGA	1e-17	-4.066e+01	0.0000	55720.0	88.12%	420021.7	86.90%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-17	-4.037e+01	0.0000	14674.0	23.21%	104821.7	21.69%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-15	-3.607e+01	0.0000	11324.0	17.91%	80300.4	16.61%
SeqBias: CG bias	SSSSSSSSSS	1e-15	-3.503e+01	0.0000	60502.0	95.68%	458977.1	94.96%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-14	-3.414e+01	0.0000	16894.0	26.72%	122074.0	25.26%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-14	-3.397e+01	0.0000	10441.0	16.51%	73946.8	15.30%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-13	-3.018e+01	0.0000	4665.0	7.38%	31837.9	6.59%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-11	-2.723e+01	0.0000	22604.0	35.75%	165980.1	34.34%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-11	-2.640e+01	0.0000	6447.0	10.20%	45135.5	9.34%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-10	-2.335e+01	0.0000	1365.0	2.16%	8632.8	1.79%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-9	-2.194e+01	0.0000	5507.0	8.71%	38608.1	7.99%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-8	-1.943e+01	0.0000	36353.0	57.49%	272013.7	56.28%
SeqBias: CA-repeat	CACACACACA	1e-8	-1.893e+01	0.0000	51552.0	81.53%	389473.6	80.58%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-4	-1.129e+01	0.0003	11821.0	18.69%	87025.5	18.01%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-4	-1.065e+01	0.0005	11081.0	17.52%	81566.4	16.88%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-4	-9.930e+00	0.0009	12785.0	20.22%	94548.8	19.56%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-4	-9.592e+00	0.0013	12301.0	19.45%	90961.8	18.82%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-3	-8.520e+00	0.0035	33267.0	52.61%	250667.5	51.86%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-3	-8.175e+00	0.0047	20423.0	32.30%	152821.9	31.62%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-3	-7.917e+00	0.0059	1473.0	2.33%	10244.9	2.12%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-3	-7.257e+00	0.0109	22843.0	36.13%	171477.8	35.48%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-7.124e+00	0.0120	3158.0	4.99%	22756.9	4.71%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-3	-7.073e+00	0.0122	23897.0	37.79%	179556.7	37.15%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.059e+00	0.0122	14468.0	22.88%	107910.1	22.33%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-5.510e+00	0.0540	52609.0	83.20%	400092.5	82.78%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-2	-5.361e+00	0.0606	24655.0	38.99%	185869.7	38.46%
SeqBias: C/A-bias	MMMMMMMMMM	1e-2	-5.164e+00	0.0714	63231.0	100.00%	483284.7	99.99%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-2	-4.876e+00	0.0922	62818.0	99.35%	479748.1	99.26%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-4.763e+00	0.1002	63229.0	100.00%	483257.1	99.99%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-2	-4.653e+00	0.1085	33565.0	53.08%	254168.6	52.59%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-4.554e+00	0.1164	7418.0	11.73%	55192.9	11.42%
Tal1	CATCTG	1e-1	-4.295e+00	0.1466	17615.0	27.86%	132625.1	27.44%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-4.294e+00	0.1466	46755.0	73.94%	355395.1	73.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.177e+00	0.1562	26694.0	42.22%	201860.4	41.76%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-3.974e+00	0.1865	11978.0	18.94%	89896.4	18.60%
SeqBias: TA-repeat	TATATATATA	1e-1	-3.610e+00	0.2618	27184.0	42.99%	205838.6	42.59%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.496e+00	0.2862	9983.0	15.79%	74913.5	15.50%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.443e+00	0.2946	9870.0	15.61%	74073.7	15.33%
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-3.229e+00	0.3563	56314.0	89.06%	429322.2	88.83%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-1	-3.048e+00	0.4175	33895.0	53.61%	257380.4	53.25%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.894e+00	0.4759	15426.0	24.40%	116514.0	24.11%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.882e+00	0.4759	1766.0	2.79%	12967.8	2.68%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.790e+00	0.5056	11527.0	18.23%	86893.9	17.98%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-1	-2.587e+00	0.6066	12031.0	19.03%	90809.3	18.79%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.525e+00	0.6323	19827.0	31.36%	150220.2	31.08%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.198e+00	0.8593	25977.0	41.08%	197332.6	40.83%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.123e+00	0.9077	11167.0	17.66%	84440.1	17.47%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-2.097e+00	0.9145	42023.0	66.46%	320090.4	66.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.076e+00	0.9162	7358.0	11.64%	55490.9	11.48%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.978e+00	0.9919	3150.0	4.98%	23594.8	4.88%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.917e+00	1.0000	27259.0	43.11%	207297.4	42.89%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.802e+00	1.0000	644.0	1.02%	4722.7	0.98%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.757e+00	1.0000	40438.0	63.95%	308169.8	63.76%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.658e+00	1.0000	2790.0	4.41%	20957.7	4.34%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.612e+00	1.0000	13555.0	21.44%	102902.9	21.29%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-1.546e+00	1.0000	63229.0	100.00%	483293.7	99.99%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.392e+00	1.0000	25247.0	39.93%	192300.4	39.79%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.295e+00	1.0000	2239.0	3.54%	16885.8	3.49%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.179e+00	1.0000	697.0	1.10%	5218.5	1.08%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.057e+00	1.0000	1634.0	2.58%	12360.7	2.56%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.023e+00	1.0000	39062.0	61.78%	298221.8	61.70%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.371e-01	1.0000	2569.0	4.06%	19523.6	4.04%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-8.646e-01	1.0000	8537.0	13.50%	65113.1	13.47%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.591e-01	1.0000	636.0	1.01%	4819.9	1.00%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.529e-01	1.0000	1257.0	1.99%	9552.1	1.98%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.756e-01	1.0000	741.0	1.17%	5639.5	1.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.649e-01	1.0000	297.0	0.47%	2273.0	0.47%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-5.894e-01	1.0000	273.0	0.43%	2102.3	0.43%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-5.744e-01	1.0000	90.0	0.14%	697.1	0.14%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.696e-01	1.0000	898.0	1.42%	6901.4	1.43%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-5.554e-01	1.0000	17.0	0.03%	133.9	0.03%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.398e-01	1.0000	994.0	1.57%	7648.9	1.58%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.298e-01	1.0000	9828.0	15.54%	75286.8	15.58%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.991e-01	1.0000	9820.0	15.53%	75260.6	15.57%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.742e-01	1.0000	1298.0	2.05%	10009.2	2.07%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.641e-01	1.0000	19638.0	31.06%	150416.1	31.12%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-4.408e-01	1.0000	9197.0	14.55%	70562.2	14.60%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-4.302e-01	1.0000	1195.0	1.89%	9239.8	1.91%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.965e-01	1.0000	2484.0	3.93%	19162.5	3.96%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-3.831e-01	1.0000	18896.0	29.88%	144876.5	29.97%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-3.675e-01	1.0000	56.0	0.09%	456.1	0.09%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-3.453e-01	1.0000	78.0	0.12%	633.9	0.13%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.199e-01	1.0000	756.0	1.20%	5910.7	1.22%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-3.070e-01	1.0000	9442.0	14.93%	72629.1	15.03%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-3.025e-01	1.0000	120.0	0.19%	972.6	0.20%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.965e-01	1.0000	14535.0	22.99%	111662.6	23.10%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.898e-01	1.0000	254.0	0.40%	2026.2	0.42%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-2.858e-01	1.0000	9910.0	15.67%	76252.6	15.78%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.855e-01	1.0000	17439.0	27.58%	133918.2	27.71%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.570e-01	1.0000	463.0	0.73%	3668.5	0.76%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-2.565e-01	1.0000	1212.0	1.92%	9473.6	1.96%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.384e-01	1.0000	4408.0	6.97%	34108.3	7.06%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.339e-01	1.0000	41.0	0.06%	354.0	0.07%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.295e-01	1.0000	21443.0	33.91%	164700.5	34.08%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.284e-01	1.0000	2264.0	3.58%	17619.0	3.65%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-2.266e-01	1.0000	2470.0	3.91%	19209.0	3.97%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.130e-01	1.0000	230.0	0.36%	1864.0	0.39%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.115e-01	1.0000	5378.0	8.51%	41606.3	8.61%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.105e-01	1.0000	63230.0	100.00%	483320.3	100.00%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.972e-01	1.0000	631.0	1.00%	5009.5	1.04%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.873e-01	1.0000	13472.0	21.31%	103771.2	21.47%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.825e-01	1.0000	533.0	0.84%	4254.2	0.88%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.812e-01	1.0000	569.0	0.90%	4536.1	0.94%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.666e-01	1.0000	3051.0	4.83%	23768.8	4.92%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.653e-01	1.0000	1793.0	2.84%	14053.7	2.91%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.637e-01	1.0000	249.0	0.39%	2035.3	0.42%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.606e-01	1.0000	18292.0	28.93%	140785.0	29.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.587e-01	1.0000	911.0	1.44%	7219.5	1.49%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.587e-01	1.0000	911.0	1.44%	7219.5	1.49%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.538e-01	1.0000	1972.0	3.12%	15453.8	3.20%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.492e-01	1.0000	12780.0	20.21%	98578.5	20.40%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-1.461e-01	1.0000	7722.0	12.21%	59760.3	12.36%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.429e-01	1.0000	27814.0	43.99%	213729.1	44.22%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.395e-01	1.0000	914.0	1.45%	7262.0	1.50%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.320e-01	1.0000	38720.0	61.24%	297115.5	61.47%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.318e-01	1.0000	4698.0	7.43%	36531.6	7.56%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.303e-01	1.0000	179.0	0.28%	1495.7	0.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.255e-01	1.0000	1608.0	2.54%	12673.7	2.62%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.245e-01	1.0000	1244.0	1.97%	9847.7	2.04%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.229e-01	1.0000	718.0	1.14%	5748.9	1.19%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.076e-01	1.0000	5317.0	8.41%	41363.9	8.56%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.053e-01	1.0000	2718.0	4.30%	21308.1	4.41%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.050e-01	1.0000	4663.0	7.37%	36329.9	7.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.005e-01	1.0000	954.0	1.51%	7619.9	1.58%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.971e-02	1.0000	105.0	0.17%	914.0	0.19%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-9.269e-02	1.0000	3688.0	5.83%	28838.7	5.97%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-9.062e-02	1.0000	887.0	1.40%	7109.3	1.47%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.866e-02	1.0000	2677.0	4.23%	21029.7	4.35%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-8.725e-02	1.0000	898.0	1.42%	7200.8	1.49%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.410e-02	1.0000	152.0	0.24%	1304.2	0.27%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-7.877e-02	1.0000	572.0	0.90%	4652.3	0.96%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.539e-02	1.0000	20765.0	32.84%	160120.2	33.13%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.203e-02	1.0000	32346.0	51.16%	248754.7	51.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.978e-02	1.0000	13747.0	21.74%	106340.5	22.00%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.718e-02	1.0000	3133.0	4.95%	24622.0	5.09%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-6.708e-02	1.0000	887.0	1.40%	7147.8	1.48%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.651e-02	1.0000	4407.0	6.97%	34479.3	7.13%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.316e-02	1.0000	4719.0	7.46%	36903.4	7.64%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.143e-02	1.0000	1156.0	1.83%	9266.1	1.92%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-5.905e-02	1.0000	48.0	0.08%	459.9	0.10%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.783e-02	1.0000	571.0	0.90%	4675.7	0.97%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-5.446e-02	1.0000	11927.0	18.86%	92461.7	19.13%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.215e-02	1.0000	2200.0	3.48%	17433.9	3.61%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.172e-02	1.0000	1229.0	1.94%	9861.5	2.04%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.018e-02	1.0000	10485.0	16.58%	81405.6	16.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.772e-02	1.0000	2259.0	3.57%	17908.1	3.71%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-4.733e-02	1.0000	11451.0	18.11%	88855.9	18.38%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.636e-02	1.0000	8387.0	13.26%	65284.3	13.51%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.947e-02	1.0000	1093.0	1.73%	8830.6	1.83%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.808e-02	1.0000	1061.0	1.68%	8583.7	1.78%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.764e-02	1.0000	3868.0	6.12%	30446.6	6.30%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.641e-02	1.0000	1587.0	2.51%	12712.5	2.63%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.617e-02	1.0000	1120.0	1.77%	9053.8	1.87%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.466e-02	1.0000	22908.0	36.23%	176896.0	36.60%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.394e-02	1.0000	8853.0	14.00%	68974.4	14.27%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-3.259e-02	1.0000	3643.0	5.76%	28733.9	5.95%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.939e-02	1.0000	2127.0	3.36%	16963.6	3.51%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.755e-02	1.0000	2866.0	4.53%	22731.2	4.70%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.651e-02	1.0000	1045.0	1.65%	8500.9	1.76%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-2.631e-02	1.0000	785.0	1.24%	6447.0	1.33%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-2.614e-02	1.0000	2259.0	3.57%	18012.1	3.73%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.610e-02	1.0000	5063.0	8.01%	39786.3	8.23%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-2.585e-02	1.0000	5382.0	8.51%	42257.8	8.74%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.546e-02	1.0000	3569.0	5.64%	28210.0	5.84%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.513e-02	1.0000	154.0	0.24%	1382.9	0.29%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.361e-02	1.0000	2756.0	4.36%	21903.2	4.53%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-2.337e-02	1.0000	809.0	1.28%	6649.5	1.38%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.277e-02	1.0000	900.0	1.42%	7372.2	1.53%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.209e-02	1.0000	2194.0	3.47%	17532.8	3.63%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.203e-02	1.0000	64.0	0.10%	628.4	0.13%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.141e-02	1.0000	608.0	0.96%	5060.5	1.05%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.140e-02	1.0000	189.0	0.30%	1679.0	0.35%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.997e-02	1.0000	1006.0	1.59%	8224.4	1.70%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.729e-02	1.0000	16437.0	26.00%	127541.4	26.39%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.499e-02	1.0000	3555.0	5.62%	28205.8	5.84%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.484e-02	1.0000	8047.0	12.73%	62999.0	13.03%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.475e-02	1.0000	986.0	1.56%	8098.9	1.68%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.371e-02	1.0000	2359.0	3.73%	18896.6	3.91%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.346e-02	1.0000	1199.0	1.90%	9792.4	2.03%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.346e-02	1.0000	3096.0	4.90%	24651.6	5.10%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.331e-02	1.0000	773.0	1.22%	6417.8	1.33%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.297e-02	1.0000	1721.0	2.72%	13906.3	2.88%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.247e-02	1.0000	1368.0	2.16%	11134.7	2.30%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.231e-02	1.0000	2249.0	3.56%	18052.3	3.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.162e-02	1.0000	1572.0	2.49%	12749.9	2.64%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.128e-02	1.0000	24113.0	38.13%	186581.8	38.60%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.118e-02	1.0000	6306.0	9.97%	49610.7	10.26%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.065e-02	1.0000	2033.0	3.22%	16381.1	3.39%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.050e-02	1.0000	1457.0	2.30%	11856.6	2.45%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.049e-02	1.0000	8515.0	13.47%	66706.9	13.80%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.021e-02	1.0000	4899.0	7.75%	38724.1	8.01%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.013e-02	1.0000	1649.0	2.61%	13372.7	2.77%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.011e-02	1.0000	9919.0	15.69%	77553.5	16.05%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-9.872e-03	1.0000	980.0	1.55%	8091.5	1.67%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.314e-03	1.0000	10716.0	16.95%	83724.0	17.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.163e-03	1.0000	1143.0	1.81%	9391.5	1.94%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.162e-03	1.0000	719.0	1.14%	6019.3	1.25%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-9.094e-03	1.0000	3714.0	5.87%	29536.0	6.11%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.692e-03	1.0000	3265.0	5.16%	26044.5	5.39%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-8.307e-03	1.0000	9907.0	15.67%	77515.2	16.04%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.275e-03	1.0000	1781.0	2.82%	14436.7	2.99%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.200e-03	1.0000	3951.0	6.25%	31399.4	6.50%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.121e-03	1.0000	691.0	1.09%	5805.8	1.20%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.042e-03	1.0000	5561.0	8.79%	43911.6	9.09%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.989e-03	1.0000	5151.0	8.15%	40731.0	8.43%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.957e-03	1.0000	35234.0	55.72%	271765.1	56.23%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.952e-03	1.0000	2855.0	4.52%	22858.6	4.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-7.290e-03	1.0000	3567.0	5.64%	28430.0	5.88%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-7.250e-03	1.0000	5865.0	9.28%	46291.2	9.58%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.075e-03	1.0000	4283.0	6.77%	34010.5	7.04%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.934e-03	1.0000	961.0	1.52%	7974.2	1.65%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.708e-03	1.0000	13703.0	21.67%	106833.0	22.10%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-6.390e-03	1.0000	1754.0	2.77%	14256.1	2.95%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.664e-03	1.0000	12770.0	20.20%	99697.3	20.63%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.584e-03	1.0000	2287.0	3.62%	18463.7	3.82%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.560e-03	1.0000	2506.0	3.96%	20181.4	4.18%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.388e-03	1.0000	1736.0	2.75%	14135.7	2.92%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-5.372e-03	1.0000	5432.0	8.59%	42994.3	8.90%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-4.990e-03	1.0000	2715.0	4.29%	21834.9	4.52%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-4.974e-03	1.0000	5075.0	8.03%	40236.1	8.32%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-4.928e-03	1.0000	6984.0	11.05%	55049.7	11.39%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-4.851e-03	1.0000	4862.0	7.69%	38585.2	7.98%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.317e-03	1.0000	5963.0	9.43%	47161.7	9.76%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-4.137e-03	1.0000	14435.0	22.83%	112611.9	23.30%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.130e-03	1.0000	2570.0	4.06%	20725.5	4.29%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.000e-03	1.0000	3913.0	6.19%	31230.7	6.46%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-3.814e-03	1.0000	5774.0	9.13%	45719.1	9.46%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-3.728e-03	1.0000	1901.0	3.01%	15480.7	3.20%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.063e-03	1.0000	1950.0	3.08%	15890.0	3.29%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.646e-03	1.0000	11619.0	18.38%	91031.3	18.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.610e-03	1.0000	3025.0	4.78%	24357.1	5.04%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.240e-03	1.0000	3007.0	4.76%	24238.4	5.01%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.069e-03	1.0000	4345.0	6.87%	34711.3	7.18%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.050e-03	1.0000	5525.0	8.74%	43904.5	9.08%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.872e-03	1.0000	20226.0	31.99%	157372.9	32.56%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.728e-03	1.0000	1579.0	2.50%	13021.4	2.69%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.657e-03	1.0000	8358.0	13.22%	65934.0	13.64%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.606e-03	1.0000	1127.0	1.78%	9431.9	1.95%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.544e-03	1.0000	22260.0	35.20%	173043.6	35.80%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.390e-03	1.0000	10621.0	16.80%	83483.3	17.27%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-1.266e-03	1.0000	9665.0	15.29%	76112.5	15.75%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.202e-03	1.0000	5877.0	9.29%	46741.2	9.67%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.108e-03	1.0000	2822.0	4.46%	22882.9	4.73%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-9.640e-04	1.0000	1313.0	2.08%	10963.0	2.27%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-9.590e-04	1.0000	5305.0	8.39%	42327.9	8.76%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.840e-04	1.0000	2672.0	4.23%	21731.3	4.50%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.420e-04	1.0000	1684.0	2.66%	13928.5	2.88%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.190e-04	1.0000	6363.0	10.06%	50592.9	10.47%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-8.100e-04	1.0000	5928.0	9.38%	47209.4	9.77%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-7.890e-04	1.0000	2525.0	3.99%	20587.1	4.26%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.380e-04	1.0000	13565.0	21.45%	106368.8	22.01%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.000e-04	1.0000	6178.0	9.77%	49181.5	10.18%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.940e-04	1.0000	24536.0	38.80%	190735.7	39.46%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.840e-04	1.0000	15416.0	24.38%	120657.2	24.96%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.650e-04	1.0000	1592.0	2.52%	13220.0	2.74%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.240e-04	1.0000	4217.0	6.67%	33901.7	7.01%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.420e-04	1.0000	2733.0	4.32%	22272.7	4.61%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-4.970e-04	1.0000	7979.0	12.62%	63243.2	13.08%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.910e-04	1.0000	3437.0	5.44%	27822.4	5.76%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.680e-04	1.0000	2698.0	4.27%	22014.9	4.55%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.560e-04	1.0000	127.0	0.20%	1301.7	0.27%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-4.330e-04	1.0000	2853.0	4.51%	23245.0	4.81%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-4.100e-04	1.0000	25532.0	40.38%	198519.7	41.07%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.910e-04	1.0000	10805.0	17.09%	85192.2	17.63%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-3.330e-04	1.0000	20926.0	33.09%	163234.8	33.77%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.220e-04	1.0000	1252.0	1.98%	10569.8	2.19%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.960e-04	1.0000	5415.0	8.56%	43379.1	8.98%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.730e-04	1.0000	8206.0	12.98%	65120.0	13.47%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-2.340e-04	1.0000	6420.0	10.15%	51256.7	10.60%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.340e-04	1.0000	3169.0	5.01%	25810.1	5.34%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.290e-04	1.0000	6482.0	10.25%	51743.6	10.71%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-2.230e-04	1.0000	3249.0	5.14%	26446.4	5.47%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.020e-04	1.0000	1375.0	2.17%	11595.0	2.40%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.840e-04	1.0000	8348.0	13.20%	66297.7	13.72%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.790e-04	1.0000	7197.0	11.38%	57353.8	11.87%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.700e-04	1.0000	1565.0	2.48%	13130.6	2.72%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.570e-04	1.0000	548.0	0.87%	4903.1	1.01%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.560e-04	1.0000	6355.0	10.05%	50818.0	10.51%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.360e-04	1.0000	10776.0	17.04%	85187.5	17.63%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.320e-04	1.0000	5829.0	9.22%	46739.1	9.67%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.150e-04	1.0000	4489.0	7.10%	36275.6	7.51%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-8.200e-05	1.0000	2774.0	4.39%	22814.7	4.72%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.900e-05	1.0000	593.0	0.94%	5312.8	1.10%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-7.900e-05	1.0000	19142.0	30.27%	149878.4	31.01%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-7.400e-05	1.0000	5442.0	8.61%	43802.2	9.06%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.900e-05	1.0000	29689.0	46.95%	230822.8	47.76%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.300e-05	1.0000	5713.0	9.04%	45944.4	9.51%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.000e-05	1.0000	19046.0	30.12%	149244.1	30.88%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.200e-05	1.0000	1911.0	3.02%	16019.3	3.31%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-3.900e-05	1.0000	10168.0	16.08%	80713.1	16.70%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.800e-05	1.0000	1579.0	2.50%	13368.8	2.77%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.700e-05	1.0000	13919.0	22.01%	109769.4	22.71%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-3.500e-05	1.0000	2524.0	3.99%	20922.0	4.33%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-3.500e-05	1.0000	10010.0	15.83%	79509.7	16.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.400e-05	1.0000	5625.0	8.90%	45348.5	9.38%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.300e-05	1.0000	4391.0	6.94%	35671.1	7.38%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.300e-05	1.0000	3640.0	5.76%	29759.2	6.16%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.000e-05	1.0000	8156.0	12.90%	65121.8	13.47%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-3.000e-05	1.0000	2814.0	4.45%	23239.5	4.81%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-2.500e-05	1.0000	14766.0	23.35%	116394.8	24.08%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-2.400e-05	1.0000	2024.0	3.20%	16971.1	3.51%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.800e-05	1.0000	6180.0	9.77%	49777.1	10.30%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.600e-05	1.0000	5431.0	8.59%	43934.4	9.09%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.500e-05	1.0000	2664.0	4.21%	22117.6	4.58%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.500e-05	1.0000	7825.0	12.38%	62659.9	12.96%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.400e-05	1.0000	2488.0	3.93%	20722.7	4.29%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.300e-05	1.0000	14227.0	22.50%	112358.2	23.25%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.300e-05	1.0000	7052.0	11.15%	56645.0	11.72%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.000e-06	1.0000	13080.0	20.69%	103550.2	21.42%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-9.000e-06	1.0000	19254.0	30.45%	151216.2	31.29%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.000e-06	1.0000	15054.0	23.81%	118826.6	24.59%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-9.000e-06	1.0000	8268.0	13.08%	66194.1	13.70%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.000e-06	1.0000	8302.0	13.13%	66481.5	13.75%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-7.000e-06	1.0000	6986.0	11.05%	56223.1	11.63%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.000e-06	1.0000	4310.0	6.82%	35231.2	7.29%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.000e-06	1.0000	5736.0	9.07%	46446.3	9.61%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.000e-06	1.0000	33011.0	52.21%	256840.3	53.14%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-5.000e-06	1.0000	9815.0	15.52%	78336.2	16.21%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-5.000e-06	1.0000	20951.0	33.13%	164423.1	34.02%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.000e-06	1.0000	5413.0	8.56%	43974.4	9.10%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.000e-06	1.0000	3210.0	5.08%	26593.5	5.50%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.000e-06	1.0000	5044.0	7.98%	41082.9	8.50%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.000e-06	1.0000	22753.0	35.98%	178353.4	36.90%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.000e-06	1.0000	21658.0	34.25%	169957.9	35.16%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.000e-06	1.0000	7905.0	12.50%	63533.0	13.14%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.000e-06	1.0000	10503.0	16.61%	83802.8	17.34%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.000e-06	1.0000	3229.0	5.11%	26791.5	5.54%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.000e-06	1.0000	1407.0	2.23%	12215.1	2.53%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.000e-06	1.0000	10403.0	16.45%	83110.7	17.20%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.000e-06	1.0000	4682.0	7.40%	38348.9	7.93%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.000e-06	1.0000	3734.0	5.91%	30860.3	6.38%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.000e-06	1.0000	16834.0	26.62%	132964.2	27.51%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.000e-06	1.0000	743.0	1.18%	6778.8	1.40%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.000e-06	1.0000	19197.0	30.36%	151228.0	31.29%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.000e-06	1.0000	8476.0	13.40%	68161.7	14.10%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.000e-06	1.0000	11311.0	17.89%	90249.5	18.67%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-1.000e-06	1.0000	12053.0	19.06%	96031.6	19.87%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.000e-06	1.0000	15991.0	25.29%	126547.3	26.18%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.000e-06	1.0000	5731.0	9.06%	46696.0	9.66%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.000e-06	1.0000	15357.0	24.29%	121670.7	25.17%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.000e-06	1.0000	1131.0	1.79%	10026.6	2.07%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	15054.0	23.81%	119365.8	24.70%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-0.000e+00	1.0000	9992.0	15.80%	80089.1	16.57%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-0.000e+00	1.0000	1810.0	2.86%	15585.1	3.22%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	12235.0	19.35%	97577.3	20.19%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	5645.0	8.93%	46154.9	9.55%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	3971.0	6.28%	32951.5	6.82%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-0.000e+00	1.0000	9695.0	15.33%	78009.8	16.14%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-0.000e+00	1.0000	19630.0	31.04%	155053.9	32.08%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	12177.0	19.26%	97518.0	20.18%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-0.000e+00	1.0000	4205.0	6.65%	34990.1	7.24%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-0.000e+00	1.0000	7056.0	11.16%	57582.2	11.91%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-0.000e+00	1.0000	6198.0	9.80%	50874.0	10.53%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	10260.0	16.23%	82742.0	17.12%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	8810.0	13.93%	71405.1	14.77%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-0.000e+00	1.0000	16115.0	25.49%	128262.0	26.54%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-0.000e+00	1.0000	2476.0	3.92%	21295.7	4.41%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-0.000e+00	1.0000	18270.0	28.89%	145022.5	30.01%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-0.000e+00	1.0000	3344.0	5.29%	28324.0	5.86%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-0.000e+00	1.0000	10656.0	16.85%	86028.9	17.80%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	15736.0	24.89%	128570.0	26.60%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-0.000e+00	1.0000	7880.0	12.46%	64786.0	13.40%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-0.000e+00	1.0000	12353.0	19.54%	101059.7	20.91%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	13401.0	21.19%	107448.9	22.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	15831.0	25.04%	128503.0	26.59%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-0.000e+00	1.0000	5598.0	8.85%	46899.3	9.70%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	19020.0	30.08%	151233.1	31.29%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	5537.0	8.76%	46019.8	9.52%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	9138.0	14.45%	74839.3	15.48%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	19945.0	31.54%	160268.8	33.16%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	8522.0	13.48%	70001.9	14.48%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	9116.0	14.42%	74971.2	15.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	19742.0	31.22%	156775.1	32.44%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	8041.0	12.72%	65783.2	13.61%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	14248.0	22.53%	116472.5	24.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-0.000e+00	1.0000	9562.0	15.12%	78857.7	16.32%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	18180.0	28.75%	147506.2	30.52%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-0.000e+00	1.0000	8418.0	13.31%	69047.3	14.29%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-0.000e+00	1.0000	6751.0	10.68%	56573.8	11.71%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-0.000e+00	1.0000	12775.0	20.20%	104803.3	21.68%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-0.000e+00	1.0000	4604.0	7.28%	38938.0	8.06%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-0.000e+00	1.0000	1712.0	2.71%	15332.9	3.17%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	63231.0	100.00%	483326.4	100.00%