| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-343 | -7.910e+02 | 0.0000 | 24072.0 | 46.81% | 182351.8 | 37.76% | motif file (matrix) | |
| 2 | | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-312 | -7.200e+02 | 0.0000 | 21495.0 | 41.79% | 161079.2 | 33.36% | motif file (matrix) | |
| 3 | | SeqBias: CG bias | 1e-5 | -1.275e+01 | 0.0004 | 49354.0 | 95.96% | 461319.0 | 95.54% | motif file (matrix) | |
| 4 | | CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-5 | -1.155e+01 | 0.0009 | 2258.0 | 4.39% | 19290.1 | 3.99% | motif file (matrix) |