Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 52017)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 482495)	% of Background Sequences with Motif
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-374	-8.617e+02	0.0000	24786.0	47.65%	184506.2	38.24%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-345	-7.957e+02	0.0000	22401.0	43.06%	164971.7	34.19%
SeqBias: GA-repeat	GAGAGAGAGA	1e-156	-3.612e+02	0.0000	47535.0	91.38%	422322.1	87.52%
SeqBias: CA-repeat	CACACACACA	1e-91	-2.107e+02	0.0000	43755.0	84.11%	388421.4	80.49%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-80	-1.857e+02	0.0000	37124.0	71.36%	324690.4	67.29%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-76	-1.751e+02	0.0000	44204.0	84.98%	394549.9	81.76%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-70	-1.622e+02	0.0000	34554.0	66.42%	301493.2	62.48%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-69	-1.597e+02	0.0000	39329.0	75.60%	347431.1	72.00%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-66	-1.535e+02	0.0000	28517.0	54.82%	245283.3	50.83%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-66	-1.530e+02	0.0000	34143.0	65.63%	298165.8	61.79%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-59	-1.366e+02	0.0000	34579.0	66.47%	303353.5	62.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-54	-1.263e+02	0.0000	20789.0	39.96%	175939.9	36.46%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-52	-1.211e+02	0.0000	27980.0	53.79%	242488.4	50.25%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-51	-1.179e+02	0.0000	24355.0	46.82%	209189.3	43.35%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-49	-1.138e+02	0.0000	28907.0	55.57%	251656.1	52.15%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-48	-1.114e+02	0.0000	29298.0	56.32%	255480.8	52.94%
SeqBias: CG bias	SSSSSSSSSS	1e-47	-1.095e+02	0.0000	49628.0	95.40%	452932.1	93.86%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-44	-1.035e+02	0.0000	30518.0	58.67%	267488.1	55.43%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e-40	-9.350e+01	0.0000	26441.0	50.83%	230336.3	47.73%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-40	-9.220e+01	0.0000	11090.0	21.32%	91062.0	18.87%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-39	-9.067e+01	0.0000	21266.0	40.88%	182924.5	37.91%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-39	-9.040e+01	0.0000	29317.0	56.36%	257326.4	53.33%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-37	-8.712e+01	0.0000	18015.0	34.63%	153581.7	31.83%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-37	-8.603e+01	0.0000	21417.0	41.17%	184688.7	38.27%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-36	-8.336e+01	0.0000	21433.0	41.20%	185059.6	38.35%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-35	-8.238e+01	0.0000	22485.0	43.22%	194791.9	40.37%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-35	-8.157e+01	0.0000	14673.0	28.21%	123810.5	25.66%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e-35	-8.066e+01	0.0000	30633.0	58.89%	270457.5	56.05%
Tal1	CATCTG	1e-34	-7.951e+01	0.0000	15220.0	29.26%	128897.4	26.71%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-34	-7.950e+01	0.0000	23646.0	45.46%	205719.6	42.63%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-34	-7.858e+01	0.0000	17014.0	32.71%	145191.2	30.09%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-33	-7.812e+01	0.0000	22993.0	44.20%	199832.4	41.41%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e-32	-7.514e+01	0.0000	21194.0	40.74%	183585.3	38.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-32	-7.377e+01	0.0000	20908.0	40.19%	181088.5	37.53%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-32	-7.373e+01	0.0000	4919.0	9.46%	38270.4	7.93%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-31	-7.175e+01	0.0000	19448.0	37.39%	167921.4	34.80%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-30	-7.077e+01	0.0000	8603.0	16.54%	70492.2	14.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-29	-6.903e+01	0.0000	19143.0	36.80%	165383.7	34.27%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-29	-6.846e+01	0.0000	16851.0	32.39%	144574.9	29.96%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-29	-6.840e+01	0.0000	19699.0	37.87%	170518.1	35.34%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-29	-6.734e+01	0.0000	9703.0	18.65%	80456.4	16.67%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-28	-6.593e+01	0.0000	17200.0	33.06%	147970.7	30.66%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-28	-6.540e+01	0.0000	12631.0	24.28%	106739.0	22.12%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-27	-6.335e+01	0.0000	10702.0	20.57%	89642.0	18.58%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-26	-6.140e+01	0.0000	17758.0	34.14%	153467.2	31.80%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-26	-6.137e+01	0.0000	8655.0	16.64%	71600.2	14.84%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-26	-6.106e+01	0.0000	16665.0	32.04%	143557.5	29.75%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-25	-5.941e+01	0.0000	12878.0	24.76%	109462.3	22.68%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-25	-5.914e+01	0.0000	17604.0	33.84%	152281.6	31.56%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-25	-5.872e+01	0.0000	9307.0	17.89%	77578.6	16.08%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-25	-5.858e+01	0.0000	12617.0	24.25%	107186.8	22.21%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e-24	-5.690e+01	0.0000	10637.0	20.45%	89575.8	18.56%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-23	-5.520e+01	0.0000	10796.0	20.75%	91138.2	18.89%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-23	-5.506e+01	0.0000	14869.0	28.58%	127831.9	26.49%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-23	-5.433e+01	0.0000	17875.0	34.36%	155227.2	32.17%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-23	-5.307e+01	0.0000	15685.0	30.15%	135423.3	28.06%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-22	-5.279e+01	0.0000	7002.0	13.46%	57619.9	11.94%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-22	-5.190e+01	0.0000	11134.0	21.40%	94450.4	19.57%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-22	-5.120e+01	0.0000	17105.0	32.88%	148528.7	30.78%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-22	-5.077e+01	0.0000	6713.0	12.90%	55217.4	11.44%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-22	-5.076e+01	0.0000	13061.0	25.11%	111893.2	23.19%
SeqBias: A/T bias	WWWWWWWWWW	1e-22	-5.075e+01	0.0000	46924.0	90.20%	428567.7	88.81%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-21	-5.036e+01	0.0000	9736.0	18.72%	82069.2	17.01%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-21	-4.883e+01	0.0000	11857.0	22.79%	101223.6	20.98%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-21	-4.870e+01	0.0000	13698.0	26.33%	117847.3	24.42%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-21	-4.837e+01	0.0000	11937.0	22.95%	101987.1	21.14%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-21	-4.836e+01	0.0000	21713.0	41.74%	191024.3	39.59%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-20	-4.808e+01	0.0000	18403.0	35.38%	160705.2	33.30%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-20	-4.783e+01	0.0000	11292.0	21.71%	96235.2	19.94%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-20	-4.762e+01	0.0000	14077.0	27.06%	121385.1	25.16%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-20	-4.746e+01	0.0000	5398.0	10.38%	43907.7	9.10%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-20	-4.732e+01	0.0000	18410.0	35.39%	160853.6	33.33%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-20	-4.706e+01	0.0000	8876.0	17.06%	74673.9	15.47%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-20	-4.676e+01	0.0000	18433.0	35.43%	161125.8	33.39%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-18	-4.356e+01	0.0000	15298.0	29.41%	132891.8	27.54%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-18	-4.283e+01	0.0000	7117.0	13.68%	59384.4	12.31%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-18	-4.278e+01	0.0000	11506.0	22.12%	98643.6	20.44%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-18	-4.258e+01	0.0000	7742.0	14.88%	64954.0	13.46%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-18	-4.231e+01	0.0000	13836.0	26.60%	119752.6	24.82%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-18	-4.228e+01	0.0000	13548.0	26.04%	117145.2	24.28%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-18	-4.213e+01	0.0000	22447.0	43.15%	198513.2	41.14%
SeqBias: TA-repeat	TATATATATA	1e-18	-4.170e+01	0.0000	24260.0	46.64%	215296.7	44.62%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-18	-4.148e+01	0.0000	1244.0	2.39%	8790.9	1.82%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-17	-4.075e+01	0.0000	14085.0	27.08%	122179.8	25.32%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-17	-4.038e+01	0.0000	14046.0	27.00%	121866.2	25.25%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-16	-3.905e+01	0.0000	10841.0	20.84%	93025.3	19.28%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-16	-3.887e+01	0.0000	10096.0	19.41%	86341.9	17.89%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-16	-3.799e+01	0.0000	9560.0	18.38%	81613.7	16.91%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-16	-3.697e+01	0.0000	7607.0	14.62%	64236.2	13.31%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-16	-3.685e+01	0.0000	6708.0	12.90%	56248.7	11.66%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-15	-3.585e+01	0.0000	18025.0	34.65%	158681.8	32.88%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-15	-3.577e+01	0.0000	17188.0	33.04%	151033.2	31.30%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e-15	-3.525e+01	0.0000	9918.0	19.07%	85105.5	17.64%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-15	-3.515e+01	0.0000	12787.0	24.58%	111032.1	23.01%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-15	-3.462e+01	0.0000	16049.0	30.85%	140773.0	29.17%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-14	-3.276e+01	0.0000	8882.0	17.07%	76049.9	15.76%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-13	-3.206e+01	0.0000	18586.0	35.73%	164320.6	34.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-13	-3.174e+01	0.0000	12505.0	24.04%	108874.2	22.56%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-13	-3.155e+01	0.0000	7460.0	14.34%	63428.5	13.14%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-13	-3.143e+01	0.0000	9333.0	17.94%	80243.5	16.63%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-13	-3.087e+01	0.0000	4703.0	9.04%	38999.9	8.08%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-13	-3.084e+01	0.0000	51767.0	99.51%	478850.2	99.23%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-13	-3.045e+01	0.0000	16328.0	31.39%	143861.7	29.81%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e-13	-2.994e+01	0.0000	12768.0	24.54%	111482.1	23.10%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e-12	-2.972e+01	0.0000	10077.0	19.37%	87138.4	18.06%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-12	-2.961e+01	0.0000	4884.0	9.39%	40698.5	8.43%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-12	-2.910e+01	0.0000	10973.0	21.09%	95309.8	19.75%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-12	-2.909e+01	0.0000	13249.0	25.47%	115962.0	24.03%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-12	-2.858e+01	0.0000	5571.0	10.71%	46871.9	9.71%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-12	-2.835e+01	0.0000	11153.0	21.44%	97030.1	20.11%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-12	-2.830e+01	0.0000	7862.0	15.11%	67357.5	13.96%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-12	-2.820e+01	0.0000	10963.0	21.07%	95328.0	19.76%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e-11	-2.739e+01	0.0000	8072.0	15.52%	69340.9	14.37%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-11	-2.708e+01	0.0000	7407.0	14.24%	63404.9	13.14%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-11	-2.703e+01	0.0000	3727.0	7.16%	30712.2	6.36%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-11	-2.677e+01	0.0000	5894.0	11.33%	49911.8	10.34%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-11	-2.623e+01	0.0000	7538.0	14.49%	64670.5	13.40%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-11	-2.608e+01	0.0000	9551.0	18.36%	82814.2	17.16%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-11	-2.604e+01	0.0000	18602.0	35.76%	165328.0	34.26%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-11	-2.578e+01	0.0000	17939.0	34.48%	159282.4	33.01%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-11	-2.546e+01	0.0000	4509.0	8.67%	37731.7	7.82%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-10	-2.525e+01	0.0000	7589.0	14.59%	65235.4	13.52%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-10	-2.495e+01	0.0000	10012.0	19.25%	87120.6	18.05%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-10	-2.400e+01	0.0000	9792.0	18.82%	85249.6	17.67%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-10	-2.396e+01	0.0000	8493.0	16.33%	73521.0	15.24%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-10	-2.386e+01	0.0000	9513.0	18.29%	82743.1	17.15%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-10	-2.345e+01	0.0000	9855.0	18.94%	85889.8	17.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-10	-2.344e+01	0.0000	9471.0	18.21%	82416.1	17.08%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e-10	-2.318e+01	0.0000	6272.0	12.06%	53648.2	11.12%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-10	-2.314e+01	0.0000	8477.0	16.30%	73474.9	15.23%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e-9	-2.271e+01	0.0000	7769.0	14.93%	67144.9	13.91%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-9	-2.262e+01	0.0000	8377.0	16.10%	72635.3	15.05%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e-9	-2.215e+01	0.0000	9520.0	18.30%	83025.7	17.21%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-9	-2.215e+01	0.0000	10015.0	19.25%	87509.2	18.13%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-9	-2.161e+01	0.0000	12429.0	23.89%	109524.8	22.70%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-9	-2.148e+01	0.0000	10011.0	19.24%	87564.8	18.15%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-9	-2.144e+01	0.0000	7668.0	14.74%	66386.2	13.76%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-9	-2.136e+01	0.0000	4592.0	8.83%	38839.5	8.05%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-9	-2.077e+01	0.0000	7808.0	15.01%	67731.7	14.04%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-8	-2.046e+01	0.0000	7859.0	15.11%	68230.0	14.14%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-8	-2.016e+01	0.0000	11517.0	22.14%	101433.5	21.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-8	-2.006e+01	0.0000	9122.0	17.54%	79700.6	16.52%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-8	-1.986e+01	0.0000	9509.0	18.28%	83234.2	17.25%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-8	-1.882e+01	0.0000	5422.0	10.42%	46510.9	9.64%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-8	-1.851e+01	0.0000	5004.0	9.62%	42803.0	8.87%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-7	-1.787e+01	0.0000	7297.0	14.03%	63491.5	13.16%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-7	-1.764e+01	0.0000	4735.0	9.10%	40492.8	8.39%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-7	-1.760e+01	0.0000	4972.0	9.56%	42616.4	8.83%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-7	-1.756e+01	0.0000	8141.0	15.65%	71162.6	14.75%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-7	-1.751e+01	0.0000	3862.0	7.42%	32720.9	6.78%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-7	-1.736e+01	0.0000	5667.0	10.89%	48875.1	10.13%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-7	-1.724e+01	0.0000	9376.0	18.02%	82405.4	17.08%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-7	-1.674e+01	0.0000	11573.0	22.25%	102480.9	21.24%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-7	-1.641e+01	0.0000	10295.0	19.79%	90888.6	18.84%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-6	-1.569e+01	0.0000	4852.0	9.33%	41759.2	8.65%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-6	-1.565e+01	0.0000	14556.0	27.98%	129948.2	26.93%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e-6	-1.543e+01	0.0000	2103.0	4.04%	17358.0	3.60%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-6	-1.529e+01	0.0000	3936.0	7.57%	33608.6	6.96%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-6	-1.521e+01	0.0000	4232.0	8.14%	36261.5	7.51%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-6	-1.477e+01	0.0000	2646.0	5.09%	22194.0	4.60%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-6	-1.469e+01	0.0000	8916.0	17.14%	78620.6	16.29%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-6	-1.440e+01	0.0000	2279.0	4.38%	18987.1	3.93%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-6	-1.400e+01	0.0000	3092.0	5.94%	26222.6	5.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.399e+01	0.0000	16336.0	31.40%	146610.8	30.38%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.388e+01	0.0000	14416.0	27.71%	129005.7	26.73%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-5	-1.364e+01	0.0000	1935.0	3.72%	16024.1	3.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-5	-1.339e+01	0.0000	9441.0	18.15%	83613.3	17.33%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-5	-1.321e+01	0.0000	11758.0	22.60%	104792.6	21.72%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-5	-1.310e+01	0.0000	9772.0	18.79%	86680.8	17.96%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e-5	-1.306e+01	0.0000	5123.0	9.85%	44522.1	9.23%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-5	-1.262e+01	0.0000	3344.0	6.43%	28613.1	5.93%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-5	-1.257e+01	0.0000	7932.0	15.25%	70023.7	14.51%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.245e+01	0.0000	4748.0	9.13%	41226.6	8.54%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-5	-1.231e+01	0.0000	5660.0	10.88%	49471.2	10.25%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-5	-1.226e+01	0.0000	3213.0	6.18%	27483.6	5.70%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-5	-1.218e+01	0.0000	4997.0	9.61%	43506.5	9.02%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.206e+01	0.0000	7511.0	14.44%	66281.6	13.74%
SeqBias: CG-repeat	CGCGCGCGCG	1e-5	-1.181e+01	0.0000	16479.0	31.68%	148394.5	30.75%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-5	-1.167e+01	0.0000	1833.0	3.52%	15290.2	3.17%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-4	-1.139e+01	0.0000	4435.0	8.53%	38550.7	7.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-1.125e+01	0.0000	5316.0	10.22%	46518.6	9.64%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-4	-1.121e+01	0.0000	5402.0	10.38%	47300.1	9.80%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-4	-1.121e+01	0.0000	2427.0	4.67%	20591.7	4.27%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-4	-1.097e+01	0.0000	4058.0	7.80%	35212.4	7.30%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-4	-1.091e+01	0.0000	2310.0	4.44%	19581.3	4.06%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-1.081e+01	0.0000	1249.0	2.40%	10235.8	2.12%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-4	-1.074e+01	0.0000	5237.0	10.07%	45880.9	9.51%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-4	-1.060e+01	0.0001	5392.0	10.37%	47303.3	9.80%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-4	-1.055e+01	0.0001	6745.0	12.97%	59578.0	12.35%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-4	-1.052e+01	0.0001	5498.0	10.57%	48274.9	10.00%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e-4	-1.042e+01	0.0001	2879.0	5.53%	24705.2	5.12%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-4	-1.034e+01	0.0001	2848.0	5.47%	24438.0	5.06%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-4	-1.034e+01	0.0001	5636.0	10.83%	49553.1	10.27%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-4	-1.033e+01	0.0001	7331.0	14.09%	64944.4	13.46%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-4	-1.024e+01	0.0001	5965.0	11.47%	52550.2	10.89%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-4	-1.002e+01	0.0001	6401.0	12.30%	56545.6	11.72%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-9.952e+00	0.0001	4789.0	9.21%	41948.6	8.69%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-4	-9.655e+00	0.0001	1656.0	3.18%	13905.4	2.88%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-4	-9.571e+00	0.0001	5270.0	10.13%	46360.4	9.61%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-4	-9.451e+00	0.0002	2021.0	3.89%	17160.5	3.56%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-4	-9.371e+00	0.0002	3197.0	6.15%	27682.1	5.74%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-4	-9.219e+00	0.0002	4185.0	8.04%	36601.7	7.59%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e-3	-9.105e+00	0.0002	2393.0	4.60%	20512.3	4.25%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-3	-9.072e+00	0.0002	2304.0	4.43%	19721.9	4.09%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-9.016e+00	0.0002	2909.0	5.59%	25142.1	5.21%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-3	-8.771e+00	0.0003	3329.0	6.40%	28948.9	6.00%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-3	-8.543e+00	0.0004	14201.0	27.30%	128227.1	26.57%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-3	-8.531e+00	0.0004	5198.0	9.99%	45880.7	9.51%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-3	-8.439e+00	0.0004	1096.0	2.11%	9076.7	1.88%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-3	-8.333e+00	0.0004	9164.0	17.62%	82067.1	17.01%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-3	-8.300e+00	0.0005	874.0	1.68%	7145.7	1.48%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-3	-8.062e+00	0.0006	2350.0	4.52%	20249.8	4.20%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-7.980e+00	0.0006	4476.0	8.60%	39427.7	8.17%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-7.938e+00	0.0006	2732.0	5.25%	23691.6	4.91%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-3	-7.894e+00	0.0007	2967.0	5.70%	25810.5	5.35%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-7.851e+00	0.0007	3244.0	6.24%	28311.1	5.87%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-3	-7.793e+00	0.0007	5996.0	11.53%	53267.0	11.04%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-3	-7.636e+00	0.0009	3186.0	6.12%	27819.2	5.77%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-3	-7.576e+00	0.0009	2402.0	4.62%	20775.5	4.31%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-3	-7.531e+00	0.0009	3174.0	6.10%	27726.1	5.75%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-3	-7.498e+00	0.0010	2477.0	4.76%	21458.8	4.45%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-3	-7.487e+00	0.0010	473.0	0.91%	3729.2	0.77%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-3	-7.422e+00	0.0010	7254.0	13.94%	64811.3	13.43%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-3	-7.395e+00	0.0011	3174.0	6.10%	27746.9	5.75%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-3	-7.382e+00	0.0011	2049.0	3.94%	17636.4	3.65%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-3	-7.373e+00	0.0011	5438.0	10.45%	48269.1	10.00%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-3	-7.317e+00	0.0011	1658.0	3.19%	14152.9	2.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-7.262e+00	0.0012	2664.0	5.12%	23170.6	4.80%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-7.259e+00	0.0012	2178.0	4.19%	18806.1	3.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-3	-7.202e+00	0.0013	12805.0	24.62%	115747.5	23.99%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.115e+00	0.0014	7731.0	14.86%	69237.6	14.35%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-3	-7.067e+00	0.0014	3938.0	7.57%	34705.3	7.19%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-6.928e+00	0.0016	1106.0	2.13%	9291.3	1.93%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-6.925e+00	0.0016	1580.0	3.04%	13499.5	2.80%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-6.900e+00	0.0017	5899.0	11.34%	52560.2	10.89%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-6.816e+00	0.0018	1273.0	2.45%	10780.0	2.23%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-2	-6.781e+00	0.0019	1879.0	3.61%	16186.8	3.35%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-6.772e+00	0.0019	3727.0	7.16%	32843.3	6.81%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.712e+00	0.0020	2412.0	4.64%	20978.5	4.35%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-2	-6.619e+00	0.0022	1965.0	3.78%	16976.6	3.52%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-2	-6.577e+00	0.0022	4636.0	8.91%	41128.0	8.52%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.473e+00	0.0025	5430.0	10.44%	48374.5	10.02%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e-2	-6.302e+00	0.0029	1863.0	3.58%	16101.4	3.34%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-2	-6.224e+00	0.0031	1161.0	2.23%	9844.4	2.04%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-6.170e+00	0.0033	846.0	1.63%	7063.8	1.46%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.161e+00	0.0033	3355.0	6.45%	29576.7	6.13%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-6.140e+00	0.0034	5000.0	9.61%	44525.5	9.23%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e-2	-6.130e+00	0.0034	1595.0	3.07%	13722.4	2.84%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-2	-6.118e+00	0.0034	1583.0	3.04%	13616.3	2.82%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-6.055e+00	0.0036	3970.0	7.63%	35173.3	7.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-5.834e+00	0.0045	1133.0	2.18%	9634.1	2.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-2	-5.817e+00	0.0046	2365.0	4.55%	20681.5	4.29%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.813e+00	0.0046	2101.0	4.04%	18303.4	3.79%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-5.777e+00	0.0047	3372.0	6.48%	29796.7	6.17%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-5.770e+00	0.0047	2369.0	4.55%	20724.3	4.29%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-2	-5.762e+00	0.0048	2618.0	5.03%	22973.8	4.76%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-5.633e+00	0.0054	2590.0	4.98%	22740.4	4.71%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.589e+00	0.0056	2479.0	4.77%	21744.4	4.51%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-2	-5.550e+00	0.0058	2790.0	5.36%	24562.1	5.09%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-2	-5.522e+00	0.0059	2370.0	4.56%	20770.5	4.30%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-5.385e+00	0.0068	5051.0	9.71%	45151.0	9.36%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-5.368e+00	0.0069	7128.0	13.70%	64142.8	13.29%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.229e+00	0.0079	591.0	1.14%	4897.9	1.02%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-5.213e+00	0.0080	2118.0	4.07%	18542.4	3.84%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-2	-5.196e+00	0.0081	1194.0	2.30%	10245.5	2.12%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-2	-5.150e+00	0.0084	11475.0	22.06%	104121.7	21.58%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-5.001e+00	0.0098	4555.0	8.76%	40710.6	8.44%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-2	-4.990e+00	0.0098	2472.0	4.75%	21776.0	4.51%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-4.988e+00	0.0098	1036.0	1.99%	8858.2	1.84%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-4.878e+00	0.0109	1456.0	2.80%	12629.8	2.62%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-4.810e+00	0.0116	3519.0	6.76%	31312.3	6.49%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-2	-4.786e+00	0.0119	1514.0	2.91%	13162.2	2.73%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-2	-4.774e+00	0.0120	789.0	1.52%	6683.7	1.39%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-4.681e+00	0.0131	3123.0	6.00%	27736.1	5.75%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-2	-4.639e+00	0.0136	11038.0	21.22%	100267.4	20.78%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e-2	-4.628e+00	0.0137	1587.0	3.05%	13840.4	2.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-4.596e+00	0.0141	2094.0	4.03%	18420.1	3.82%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-4.570e+00	0.0144	1493.0	2.87%	13002.7	2.69%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-4.522e+00	0.0151	2613.0	5.02%	23134.8	4.79%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-4.511e+00	0.0152	4927.0	9.47%	44220.5	9.16%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-1	-4.437e+00	0.0163	276.0	0.53%	2207.7	0.46%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-4.324e+00	0.0182	1088.0	2.09%	9397.7	1.95%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-4.131e+00	0.0220	6302.0	12.11%	56909.3	11.79%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-4.117e+00	0.0222	1237.0	2.38%	10760.6	2.23%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-1	-4.115e+00	0.0222	1808.0	3.48%	15910.7	3.30%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-4.089e+00	0.0227	1103.0	2.12%	9560.7	1.98%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-4.017e+00	0.0243	782.0	1.50%	6696.1	1.39%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.950e+00	0.0259	952.0	1.83%	8223.5	1.70%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.923e+00	0.0265	3288.0	6.32%	29393.0	6.09%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.839e+00	0.0287	1183.0	2.27%	10311.4	2.14%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e-1	-3.819e+00	0.0292	769.0	1.48%	6601.5	1.37%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.740e+00	0.0315	2444.0	4.70%	21745.7	4.51%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.717e+00	0.0321	948.0	1.82%	8215.2	1.70%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.635e+00	0.0347	4344.0	8.35%	39109.5	8.10%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-3.583e+00	0.0364	52020.0	100.00%	482513.8	99.99%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.519e+00	0.0388	138.0	0.27%	1072.1	0.22%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-3.454e+00	0.0412	1624.0	3.12%	14352.6	2.97%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.422e+00	0.0424	490.0	0.94%	4156.1	0.86%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-3.408e+00	0.0429	1580.0	3.04%	13961.3	2.89%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e-1	-3.312e+00	0.0470	737.0	1.42%	6371.5	1.32%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-1	-3.292e+00	0.0478	4078.0	7.84%	36765.8	7.62%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.266e+00	0.0489	168.0	0.32%	1341.7	0.28%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-1	-3.261e+00	0.0490	3709.0	7.13%	33397.0	6.92%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-3.236e+00	0.0500	880.0	1.69%	7664.5	1.59%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.143e+00	0.0548	1107.0	2.13%	9723.4	2.02%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.090e+00	0.0575	700.0	1.35%	6065.1	1.26%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-3.042e+00	0.0602	1951.0	3.75%	17397.1	3.61%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.028e+00	0.0608	714.0	1.37%	6198.2	1.28%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e-1	-2.945e+00	0.0659	916.0	1.76%	8027.5	1.66%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-2.904e+00	0.0684	111.0	0.21%	871.0	0.18%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.891e+00	0.0691	52012.0	99.98%	482413.8	99.97%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-1	-2.860e+00	0.0710	2645.0	5.08%	23767.6	4.93%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.794e+00	0.0757	284.0	0.55%	2385.4	0.49%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-1	-2.751e+00	0.0787	5614.0	10.79%	51026.7	10.57%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-2.724e+00	0.0806	8661.0	16.65%	79090.5	16.39%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.723e+00	0.0806	872.0	1.68%	7661.8	1.59%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-1	-2.695e+00	0.0824	588.0	1.13%	5106.3	1.06%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-2.593e+00	0.0910	1027.0	1.97%	9083.5	1.88%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-1	-2.503e+00	0.0993	5568.0	10.70%	50692.7	10.51%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.499e+00	0.0994	1311.0	2.52%	11678.8	2.42%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.497e+00	0.0994	223.0	0.43%	1869.7	0.39%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.421e+00	0.1067	8264.0	15.89%	75561.7	15.66%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-2.395e+00	0.1092	3439.0	6.61%	31164.9	6.46%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-2.352e+00	0.1137	915.0	1.76%	8106.9	1.68%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.269e+00	0.1228	778.0	1.50%	6877.4	1.43%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-2.269e+00	0.1228	778.0	1.50%	6877.4	1.43%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.252e+00	0.1244	1285.0	2.47%	11488.4	2.38%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.243e+00	0.1253	77.0	0.15%	609.9	0.13%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.228e+00	0.1267	619.0	1.19%	5444.3	1.13%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.160e+00	0.1352	1529.0	2.94%	13733.3	2.85%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.139e+00	0.1377	1456.0	2.80%	13071.3	2.71%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-2.135e+00	0.1379	1690.0	3.25%	15210.0	3.15%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.029e+00	0.1528	1534.0	2.95%	13808.0	2.86%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.025e+00	0.1530	1073.0	2.06%	9600.6	1.99%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.967e+00	0.1616	4737.0	9.11%	43248.3	8.96%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.896e+00	0.1730	1023.0	1.97%	9169.4	1.90%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.843e+00	0.1818	234.0	0.45%	2021.9	0.42%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.810e+00	0.1874	819.0	1.57%	7325.8	1.52%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.802e+00	0.1883	743.0	1.43%	6634.9	1.37%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.777e+00	0.1926	819.0	1.57%	7331.9	1.52%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.723e+00	0.2027	89.0	0.17%	740.5	0.15%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.632e+00	0.2214	8181.0	15.73%	75191.5	15.58%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.618e+00	0.2237	776.0	1.49%	6968.8	1.44%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.554e+00	0.2378	1366.0	2.63%	12384.5	2.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.541e+00	0.2402	237.0	0.46%	2078.3	0.43%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.536e+00	0.2407	536.0	1.03%	4793.4	0.99%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.516e+00	0.2450	1891.0	3.64%	17217.6	3.57%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.510e+00	0.2456	3748.0	7.20%	34322.9	7.11%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.479e+00	0.2528	2528.0	4.86%	23091.7	4.79%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.304e+00	0.3001	2451.0	4.71%	22446.5	4.65%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.259e+00	0.3131	4231.0	8.13%	38897.9	8.06%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.202e+00	0.3303	932.0	1.79%	8488.5	1.76%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.182e+00	0.3362	16.0	0.03%	127.0	0.03%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.170e+00	0.3395	1742.0	3.35%	15958.3	3.31%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.142e+00	0.3479	7601.0	14.61%	70135.1	14.53%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-1.081e+00	0.3686	512.0	0.98%	4655.1	0.96%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.036e+00	0.3846	54.0	0.10%	471.0	0.10%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.035e+00	0.3846	52.0	0.10%	453.0	0.09%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-9.508e-01	0.4166	43.0	0.08%	377.7	0.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.440e-01	0.4183	166.0	0.32%	1501.7	0.31%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.145e-01	0.4296	2983.0	5.73%	27537.9	5.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-8.171e-01	0.4722	895.0	1.72%	8256.9	1.71%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.775e-01	0.4899	1163.0	2.24%	10751.0	2.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.708e-01	0.4919	2212.0	4.25%	20473.8	4.24%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-7.269e-01	0.5126	652.0	1.25%	6034.9	1.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.001e-01	0.5250	155.0	0.30%	1433.8	0.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.341e-01	0.5593	1767.0	3.40%	16418.1	3.40%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.959e-01	0.5795	486.0	0.93%	4532.8	0.94%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-5.403e-01	0.6110	554.0	1.06%	5183.1	1.07%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.235e-01	0.6197	536.0	1.03%	5021.7	1.04%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.273e-01	0.6804	745.0	1.43%	7011.3	1.45%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-4.133e-01	0.6881	68.0	0.13%	661.7	0.14%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.970e-01	0.7709	4919.0	9.46%	46052.4	9.54%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.789e-01	0.7829	52017.0	99.99%	482526.0	100.00%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.277e-01	0.8218	5971.0	11.48%	55974.6	11.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.024e-01	0.8407	485.0	0.93%	4691.2	0.97%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.758e-02	0.9404	2257.0	4.34%	21564.1	4.47%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-8.075e-02	0.9444	52019.0	100.00%	482544.3	100.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.571e-02	0.9755	537.0	1.03%	5369.2	1.11%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.567e-02	0.9827	167.0	0.32%	1784.2	0.37%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.320e-02	1.0000	121.0	0.23%	1373.4	0.28%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-8.343e-03	1.0000	1061.0	2.04%	10610.1	2.20%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.651e-03	1.0000	2933.0	5.64%	28493.8	5.90%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.461e-03	1.0000	1605.0	3.09%	15861.3	3.29%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-9.620e-04	1.0000	1231.0	2.37%	12495.7	2.59%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	52020.0	100.00%	482548.0	100.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	0.000e+00	1.0000	1212.0	2.33%	19559.0	4.05%