| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-575 | -1.326e+03 | 0.0000 | 23451.0 | 45.22% | 162366.8 | 33.71% | motif file (matrix) | |
| 2 | | BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer | 1e-559 | -1.289e+03 | 0.0000 | 25929.0 | 50.00% | 185072.1 | 38.43% | motif file (matrix) | |
| 3 | | CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer | 1e-153 | -3.545e+02 | 0.0000 | 3656.0 | 7.05% | 20808.4 | 4.32% | motif file (matrix) |