41861
41867 (process ID) old priority 0, new priority 10
################
ChIP data: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/align/pseudo_reps/rep1/pr2/SRR836722.nodup.pr2.tagAlign.gz 
Control data: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/align/ctl1/r120621A_l1i7_aB180__wt__bioBirAonly.nodup.tagAlign.gz 
strandshift(min): -500 
strandshift(step): 5 
strandshift(max) 1500 
user-defined peak shift 90 
exclusion(min): 10 
exclusion(max): NaN 
num parallel nodes: 1 
FDR threshold: 0.01 
NumPeaks Threshold: 3e+05 
Output Directory: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/peak/spp/pseudo_reps/rep1/pr2 
narrowPeak output file name: NA 
regionPeak output file name: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/peak/spp/pseudo_reps/rep1/pr2/SRR836722.nodup.pr2.tagAlign_VS_r120621A_l1i7_aB180__wt__bioBirAonly.nodup.tagAlign.regionPeak 
Rdata filename: NA 
plot pdf filename: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/peak/spp/pseudo_reps/rep1/pr2/SRR836722.nodup.pr2.tagAlign.pdf 
result filename: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/peak/spp/pseudo_reps/rep1/pr2/SRR836722.nodup.pr2.tagAlign_x_r120621A_l1i7_aB180__wt__bioBirAonly.nodup.tagAlign.ccscore 
Overwrite files?: TRUE

Decompressing ChIP file
Decompressing control file
Reading ChIP tagAlign/BAM file /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/align/pseudo_reps/rep1/pr2/SRR836722.nodup.pr2.tagAlign.gz 
opened /tmp/3569.1.q/RtmpGa9PLt/SRR836722.nodup.pr2.tagAligna3d57ce8298
done. read 9060905 fragments
ChIP data read length 50 
[1] TRUE
Reading Control tagAlign/BAM file /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/MouseMutantData/SRR836722/out/align/ctl1/r120621A_l1i7_aB180__wt__bioBirAonly.nodup.tagAlign.gz 
opened /tmp/3569.1.q/RtmpGa9PLt/r120621A_l1i7_aB180__wt__bioBirAonly.nodup.tagAligna3d51ee7db0c
done. read 3384182 fragments
Control data read length 50 
Calculating peak characteristics
Minimum cross-correlation value 0.1219797 
Minimum cross-correlation shift 1500 
Top 3 cross-correlation values 0.150459899703748 
Top 3 estimates for fragment length 90 
Window half size 235 
Phantom peak location 55 
Phantom peak Correlation 0.1459281 
Normalized Strand cross-correlation coefficient (NSC) 1.233484 
Relative Strand Cross correlation Coefficient (RSC) 1.189233 
Phantom Peak Quality Tag 1 
null device 
          1 
Removing read stacks
Finding peaks
finding background exclusion regions ... done
determining peaks on provided 1 control datasets:
using reversed signal for FDR calculations
bg.weight= 0.3833708  excluding systematic background anomalies ... done
determining peaks on real data:
bg.weight= 2.608441  excluding systematic background anomalies ... done
calculating statistical thresholds
FDR 0.99 threshold= 9.671177 
Detected 17610 peaks