| Total Read Pairs | Distinct Read Pairs | One Read Pair | Two Read Pairs | NRF = Distinct/Total | PBC1 = OnePair/Distinct | PBC2 = OnePair/TwoPair |
---|---|---|---|---|---|---|---|
rep1 | 20160889 | 19311528 | 18521661 | 737046 | 0.957871 | 0.959099 | 25.129586 |
ctl1 | 11339535 | 11192492 | 11048814 | 141468 | 0.987033 | 0.987163 | 78.101154 |
NRF (non redundant fraction)
PBC1 (PCR Bottleneck coefficient 1)
PBC2 (PCR Bottleneck coefficient 2)
PBC1 is the primary measure. Provisionally
  | numReads | estFragLen | corr_estFragLen | PhantomPeak | corr_phantomPeak | argmin_corr | min_corr | NSC | RSC |
---|---|---|---|---|---|---|---|---|---|
rep1 | 15000000 | 150 | 0.282579283473619 | 50 | 0.276232 | 1500 | 0.196658 | 1.436907 | 1.079766 |
Normalized strand cross-correlation coefficient (NSC) = col9 in outFile
Relative strand cross-correlation coefficient (RSC) = col10 in outFile
Estimated fragment length = col3 in outFile, take the top value
Important columns highlighted, but all/whole file can be stored for display