******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYc.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:42532756-42532856 1.0000 100 chr3:188098879-188098979 1.0000 100 chr7:29068682-29068782 1.0000 100 chr3:13307603-13307703 1.0000 100 chr4:169106126-169106226 1.0000 100 chr1:9745142-9745242 1.0000 100 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1.0000 100 chr6:156636265-156636365 1.0000 100 chr4:133644823-133644923 1.0000 100 chr1:79100135-79100235 1.0000 100 chr2:69396482-69396582 1.0000 100 chr1:11706931-11707031 1.0000 100 chr5:13497210-13497310 1.0000 100 chr7:88418418-88418518 1.0000 100 chr2:233609005-233609105 1.0000 100 chr3:8826545-8826645 1.0000 100 chr4:25618023-25618123 1.0000 100 chr6:161897699-161897799 1.0000 100 chr4:87010805-87010905 1.0000 100 chr1:198977570-198977670 1.0000 100 chr2:121950364-121950464 1.0000 100 chr1:224972298-224972398 1.0000 100 chr3:31526664-31526764 1.0000 100 chr1:35620595-35620695 1.0000 100 chr5:172808542-172808642 1.0000 100 chr4:8565117-8565217 1.0000 100 chr2:200286276-200286373 1.0000 97 chr5:33464795-33464895 1.0000 100 chr2:20833899-20833999 1.0000 100 chr4:167695130-167695230 1.0000 100 chr2:215200854-215200954 1.0000 100 chr1:218135099-218135199 1.0000 100 chr1:38890034-38890134 1.0000 100 chr1:64794128-64794228 1.0000 100 chr2:174190854-174190954 1.0000 100 chr3:165583554-165583654 1.0000 100 chr7:107147102-107147202 1.0000 100 chr7:27593923-27594023 1.0000 100 chr5:176442559-176442640 1.0000 81 chr2:211508799-211508899 1.0000 100 chr5:178813802-178813902 1.0000 100 chr7:78523348-78523448 1.0000 100 chr1:16962263-16962363 1.0000 100 chr7:148955649-148955749 1.0000 100 chr7:131013482-131013582 1.0000 100 chr3:167541956-167542045 1.0000 89 chr6:4976268-4976368 1.0000 100 chr1:235169542-235169642 1.0000 100 chr4:122956623-122956720 1.0000 97 chr2:120055481-120055581 1.0000 100 chr1:219352248-219352348 1.0000 100 chr2:70124689-70124789 1.0000 100 chr2:20601770-20601870 1.0000 100 chr5:135075278-135075362 1.0000 84 chr5:78081300-78081400 1.0000 100 chr4:64057670-64057770 1.0000 100 chr1:88664286-88664386 1.0000 100 chr7:51303278-51303378 1.0000 100 chr4:175200459-175200559 1.0000 100 chr7:67759204-67759304 1.0000 100 chr3:113591587-113591687 1.0000 100 chr6:159238097-159238197 1.0000 100 chr6:159979910-159980010 1.0000 100 chr3:179564889-179564989 1.0000 100 chr8:36136987-36137080 1.0000 93 chr2:200335276-200335376 1.0000 100 chr6:131313566-131313666 1.0000 100 chr5:3098303-3098403 1.0000 100 chr6:118130394-118130494 1.0000 100 chr4:187797263-187797363 1.0000 100 chr3:81342349-81342449 1.0000 100 chr1:23991397-23991497 1.0000 100 chr1:93104874-93104974 1.0000 100 chr5:4920126-4920226 1.0000 100 chr7:1333013-1333113 1.0000 100 chr2:140640378-140640478 1.0000 100 chr1:166389433-166389533 1.0000 100 chr3:153312111-153312211 1.0000 100 chr2:24931610-24931710 1.0000 100 chr2:26996520-26996620 1.0000 100 chr2:149580042-149580142 1.0000 100 chr5:65895558-65895658 1.0000 100 chr2:16108546-16108646 1.0000 100 chr6:108096365-108096465 1.0000 100 chr4:151697779-151697879 1.0000 100 chr7:100338307-100338407 1.0000 100 chr1:45664050-45664150 1.0000 100 chr1:36104525-36104625 1.0000 100 chr1:108559287-108559387 1.0000 100 chr6:156288370-156288470 1.0000 100 chr2:64353807-64353907 1.0000 100 chr2:41941478-41941578 1.0000 100 chr7:10147710-10147810 1.0000 100 chr6:121409268-121409368 1.0000 100 chr3:65784435-65784535 1.0000 100 chr2:175734065-175734165 1.0000 100 chr1:201306673-201306773 1.0000 100 chr2:104339521-104339621 1.0000 100 chr6:103456321-103456421 1.0000 100 chr1:144924458-144924558 1.0000 100 chr6:137362214-137362314 1.0000 100 chr8:39781007-39781094 1.0000 87 chr3:63398438-63398538 1.0000 100 chr8:114036840-114036940 1.0000 100 chr3:82859835-82859935 1.0000 100 chr5:98303374-98303474 1.0000 100 chr2:7495616-7495716 1.0000 100 chr1:224951644-224951744 1.0000 100 chr2:124148213-124148313 1.0000 100 chr4:183509448-183509548 1.0000 100 chr8:73156906-73157003 1.0000 97 chr3:150833758-150833858 1.0000 100 chr3:169820535-169820635 1.0000 100 chr5:63759491-63759589 1.0000 98 chr5:25908084-25908184 1.0000 100 chr2:35919714-35919814 1.0000 100 chr2:34692785-34692885 1.0000 100 chr2:165832172-165832272 1.0000 100 chr5:97008662-97008762 1.0000 100 chr4:82630686-82630786 1.0000 100 chr1:19649969-19650069 1.0000 100 chr3:176444605-176444680 1.0000 75 chr2:107936128-107936228 1.0000 100 chr4:84797595-84797695 1.0000 100 chr2:185089085-185089185 1.0000 100 chr3:176928413-176928513 1.0000 100 chr7:31615749-31615849 1.0000 100 chr1:226399907-226400007 1.0000 100 chr2:91491856-91491956 1.0000 100 chr7:39617402-39617502 1.0000 100 chr3:64774946-64775046 1.0000 100 chr7:1075608-1075708 1.0000 100 chr6:160838502-160838602 1.0000 100 chr5:76391210-76391310 1.0000 100 chr2:102031669-102031769 1.0000 100 chr7:74118913-74119013 1.0000 100 chr4:97852962-97853062 1.0000 100 chr7:75228799-75228899 1.0000 100 chr4:163349834-163349934 1.0000 100 chr1:121263348-121263448 1.0000 100 chr3:51989986-51990086 1.0000 100 chr1:65170094-65170194 1.0000 100 chr6:37032604-37032704 1.0000 100 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYc.MemeChipResults/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYc.MemeChipResults/meme_out -mod anr -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYc.MemeChipResults/background -dna -revcomp -nostatus model: mod= anr nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 59459 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.222 C 0.278 G 0.278 T 0.222 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYc.MemeChipResults/background): A 0.227 C 0.273 G 0.273 T 0.227 ******************************************************************************** ******************************************************************************** MOTIF GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 width = 31 sites = 50 llr = 2131 E-value = 1.3e-666 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::aa::::::::a:::::a::a:a:a:2:: pos.-specific C :a:::::::::::::::::::::::::9::: probability G a::::::::::a::::::::a::a:a::8aa matrix T ::a::aaaaaa:a:aaaaa::a:::::1::: bits 2.1 ** ** ** ******** * * * 1.9 ************************** 1.7 *************************** ** 1.5 *************************** ** Relative 1.3 ******************************* Entropy 1.1 ******************************* (61.5 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GCTAATTTTTTGTATTTTTAGTAGAGACGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr7:74118913-74119013 + 61 6.89e-20 accacgcctg gctaattttttgtatttttagtagagacggg gtttcacca chr1:36104525-36104625 - 8 6.89e-20 ACCACACCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTTTCAC chr2:26996520-26996620 - 2 6.89e-20 ACGGCGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG G chr1:219352248-219352348 - 11 6.89e-20 ACCGCGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTTTCACCGT chr4:8565117-8565217 + 65 6.89e-20 accatgccca gctaattttttgtatttttagtagagacggg gtttt chr1:11706931-11707031 - 2 6.89e-20 ATCGCGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG G chr1:79100135-79100235 + 69 6.89e-20 actgcgccca gctaattttttgtatttttagtagagacggg g chr1:76438152-76438252 + 69 6.89e-20 accgtgcccg gctaattttttgtatttttagtagagacggg g chr6:9773569-9773669 + 68 6.89e-20 accatgcccg gctaattttttgtatttttagtagagacggg gt chr8:47900579-47900679 - 4 6.89e-20 ACCGCGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTT chr2:241076809-241076909 - 2 6.89e-20 ACCATGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGG G chr6:150117075-150117175 + 61 6.89e-20 accgcgccca gctaattttttgtatttttagtagagacggg gtttcaccg chr6:75274741-75274841 - 2 6.89e-20 ACCAGGCCTG GCTAATTTTTTGTATTTTTAGTAGAGACGGG G chr7:117328434-117328534 - 1 6.89e-20 ACTGTGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG chr5:2561152-2561252 - 9 6.89e-20 ACCACGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTTTCACC chr6:100509618-100509718 - 1 6.89e-20 ACTGCGCCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG chr7:148317703-148317803 + 65 6.89e-20 accacgcccg gctaattttttgtatttttagtagagacggg gattc chr4:56070301-56070401 + 69 6.89e-20 atcgcatccg gctaattttttgtatttttagtagagacggg g chr8:20392125-20392225 + 69 6.89e-20 accgcgcccg gctaattttttgtatttttagtagagacggg g chr3:129784296-129784396 - 4 6.89e-20 ACTGCACCGG GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTT chr4:70837949-70838049 - 1 6.89e-20 ACTGCGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGG chr3:132645982-132646082 + 67 6.89e-20 accgcacccg gctaattttttgtatttttagtagagacggg gtt chr4:52987028-52987128 + 70 6.89e-20 actgcgccca gctaattttttgtatttttagtagagacggg chr4:163679613-163679713 + 69 6.89e-20 accacgcccg gctaattttttgtatttttagtagagacggg g chr2:89843353-89843453 + 62 6.89e-20 actgtgcccg gctaattttttgtatttttagtagagacggg gtttcacc chr6:29456241-29456341 - 4 6.89e-20 ACCACGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGG GTT chr7:63633087-63633187 + 66 6.89e-20 accacgccca gctaattttttgtatttttagtagagacggg gttt chr6:102192570-102192670 - 1 6.89e-20 ACCGCACCCG GCTAATTTTTTGTATTTTTAGTAGAGACGGG chr5:138204622-138204722 + 69 6.89e-20 actgcgccca gctaattttttgtatttttagtagagacggg g chr3:188098879-188098979 - 2 6.89e-20 ACTACGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGG G chr6:15688026-15688126 + 70 1.26e-19 actgcgccca gctaattttttgtatttttagtagagacagg chr2:171091763-171091863 + 60 1.26e-19 accgcgcccg gctaattttttgtatttttagtagagacagg gtttcaccgt chr1:35712449-35712549 - 1 1.26e-19 ACCGCGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACAGG chr7:122960179-122960279 + 69 1.26e-19 accatgcccg gctaattttttgtatttttagtagagacagg g chr2:71354986-71355086 + 61 1.26e-19 acaacgcctg gctaattttttgtatttttagtagagacagg gtttcacag chr4:169577485-169577585 - 10 1.26e-19 CACCAGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACAGG GTTTCACCA chr2:202837282-202837382 + 70 1.26e-19 accacaccca gctaattttttgtatttttagtagagacagg chr3:128659451-128659551 - 3 1.83e-19 ACCGCGCGCG GCTAATTTTTTGTATTTTTAGTAGAGATGGG GT chr1:9769760-9769860 - 3 1.83e-19 ACCGCGCCCG GCTAATTTTTTGTATTTTTAGTAGAGATGGG GT chr5:44908345-44908445 - 2 1.83e-19 ACCACGCCTA GCTAATTTTTTGTATTTTTAGTAGAGATGGG G chr3:133008714-133008814 - 6 1.83e-19 ACTGTGCCCG GCTAATTTTTTGTATTTTTAGTAGAGATGGG GTTTC chr1:89826283-89826383 + 61 1.83e-19 actgcacaca gctaattttttgtatttttagtagagatggg gtttcacca chr4:168188287-168188387 - 9 1.83e-19 ACCGTGCCCG GCTAATTTTTTGTATTTTTAGTAGAGATGGG GTTTCACC chr1:45664050-45664150 - 6 3.46e-19 ACCATGCCCA GCTAATTTTTTGTATTTTTAGTAGAGACGGA GTTTT chr6:159238097-159238197 + 70 6.21e-19 accgcgcctg gctatttttttgtatttttagtagagacggg chr2:32308761-32308861 - 1 6.21e-19 ACCATGCCCG GCTAATTTATTGTATTTTTAGTAGAGACGGG chr1:44794228-44794328 - 3 6.21e-19 ACCGCGCCCG GCTAATTTTTTGTATTTTTAGTTGAGACGGG GT chr3:96624544-96624644 + 67 7.04e-19 actacgcccg gctaactttttgtatttttagtagagacggg gtt chr5:20249382-20249482 + 70 1.03e-18 actgcgccca cctaattttttgtatttttagtagagacagg chr4:137001677-137001777 + 66 1.12e-18 accacgccag gctaattttttgtatttttagtagagatgtg gttt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:74118913-74119013 6.9e-20 60_[+1]_9 chr1:36104525-36104625 6.9e-20 7_[-1]_62 chr2:26996520-26996620 6.9e-20 1_[-1]_68 chr1:219352248-219352348 6.9e-20 10_[-1]_59 chr4:8565117-8565217 6.9e-20 64_[+1]_5 chr1:11706931-11707031 6.9e-20 1_[-1]_68 chr1:79100135-79100235 6.9e-20 68_[+1]_1 chr1:76438152-76438252 6.9e-20 68_[+1]_1 chr6:9773569-9773669 6.9e-20 67_[+1]_2 chr8:47900579-47900679 6.9e-20 3_[-1]_66 chr2:241076809-241076909 6.9e-20 1_[-1]_68 chr6:150117075-150117175 6.9e-20 60_[+1]_9 chr6:75274741-75274841 6.9e-20 1_[-1]_68 chr7:117328434-117328534 6.9e-20 [-1]_69 chr5:2561152-2561252 6.9e-20 8_[-1]_61 chr6:100509618-100509718 6.9e-20 [-1]_69 chr7:148317703-148317803 6.9e-20 64_[+1]_5 chr4:56070301-56070401 6.9e-20 68_[+1]_1 chr8:20392125-20392225 6.9e-20 68_[+1]_1 chr3:129784296-129784396 6.9e-20 3_[-1]_66 chr4:70837949-70838049 6.9e-20 [-1]_69 chr3:132645982-132646082 6.9e-20 66_[+1]_3 chr4:52987028-52987128 6.9e-20 69_[+1] chr4:163679613-163679713 6.9e-20 68_[+1]_1 chr2:89843353-89843453 6.9e-20 61_[+1]_8 chr6:29456241-29456341 6.9e-20 3_[-1]_66 chr7:63633087-63633187 6.9e-20 65_[+1]_4 chr6:102192570-102192670 6.9e-20 [-1]_69 chr5:138204622-138204722 6.9e-20 68_[+1]_1 chr3:188098879-188098979 6.9e-20 1_[-1]_68 chr6:15688026-15688126 1.3e-19 69_[+1] chr2:171091763-171091863 1.3e-19 59_[+1]_10 chr1:35712449-35712549 1.3e-19 [-1]_69 chr7:122960179-122960279 1.3e-19 68_[+1]_1 chr2:71354986-71355086 1.3e-19 60_[+1]_9 chr4:169577485-169577585 1.3e-19 9_[-1]_60 chr2:202837282-202837382 1.3e-19 69_[+1] chr3:128659451-128659551 1.8e-19 2_[-1]_67 chr1:9769760-9769860 1.8e-19 2_[-1]_67 chr5:44908345-44908445 1.8e-19 1_[-1]_68 chr3:133008714-133008814 1.8e-19 5_[-1]_64 chr1:89826283-89826383 1.8e-19 60_[+1]_9 chr4:168188287-168188387 1.8e-19 8_[-1]_61 chr1:45664050-45664150 3.5e-19 5_[-1]_64 chr6:159238097-159238197 6.2e-19 69_[+1] chr2:32308761-32308861 6.2e-19 [-1]_69 chr1:44794228-44794328 6.2e-19 2_[-1]_67 chr3:96624544-96624644 7e-19 66_[+1]_3 chr5:20249382-20249482 1e-18 69_[+1] chr4:137001677-137001777 1.1e-18 65_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTAATTTTTTGTATTTTTAGTAGAGACGGG width=31 seqs=50 chr7:74118913-74119013 ( 61) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr1:36104525-36104625 ( 8) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr2:26996520-26996620 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr1:219352248-219352348 ( 11) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr4:8565117-8565217 ( 65) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr1:11706931-11707031 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr1:79100135-79100235 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr1:76438152-76438252 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:9773569-9773669 ( 68) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr8:47900579-47900679 ( 4) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr2:241076809-241076909 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:150117075-150117175 ( 61) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:75274741-75274841 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr7:117328434-117328534 ( 1) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr5:2561152-2561252 ( 9) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:100509618-100509718 ( 1) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr7:148317703-148317803 ( 65) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr4:56070301-56070401 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr8:20392125-20392225 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr3:129784296-129784396 ( 4) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr4:70837949-70838049 ( 1) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr3:132645982-132646082 ( 67) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr4:52987028-52987128 ( 70) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr4:163679613-163679713 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr2:89843353-89843453 ( 62) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:29456241-29456341 ( 4) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr7:63633087-63633187 ( 66) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:102192570-102192670 ( 1) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr5:138204622-138204722 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr3:188098879-188098979 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGACGGG 1 chr6:15688026-15688126 ( 70) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr2:171091763-171091863 ( 60) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr1:35712449-35712549 ( 1) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr7:122960179-122960279 ( 69) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr2:71354986-71355086 ( 61) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr4:169577485-169577585 ( 10) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr2:202837282-202837382 ( 70) GCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr3:128659451-128659551 ( 3) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr1:9769760-9769860 ( 3) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr5:44908345-44908445 ( 2) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr3:133008714-133008814 ( 6) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr1:89826283-89826383 ( 61) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr4:168188287-168188387 ( 9) GCTAATTTTTTGTATTTTTAGTAGAGATGGG 1 chr1:45664050-45664150 ( 6) GCTAATTTTTTGTATTTTTAGTAGAGACGGA 1 chr6:159238097-159238197 ( 70) GCTATTTTTTTGTATTTTTAGTAGAGACGGG 1 chr2:32308761-32308861 ( 1) GCTAATTTATTGTATTTTTAGTAGAGACGGG 1 chr1:44794228-44794328 ( 3) GCTAATTTTTTGTATTTTTAGTTGAGACGGG 1 chr3:96624544-96624644 ( 67) GCTAACTTTTTGTATTTTTAGTAGAGACGGG 1 chr5:20249382-20249482 ( 70) CCTAATTTTTTGTATTTTTAGTAGAGACAGG 1 chr4:137001677-137001777 ( 66) GCTAATTTTTTGTATTTTTAGTAGAGATGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 11.3032 E= 1.3e-666 -1229 -377 185 -1229 -1229 187 -1229 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 211 -1229 -1229 -350 -1229 -377 -1229 211 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -350 -1229 -1229 211 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 187 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 -1229 -1229 214 211 -1229 -1229 -350 -1229 -1229 187 -1229 214 -1229 -1229 -1229 -1229 -1229 187 -1229 214 -1229 -1229 -1229 -1229 166 -1229 -70 -51 -1229 162 -1229 -1229 -1229 185 -350 -350 -1229 185 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 1.3e-666 0.000000 0.020000 0.980000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.000000 0.000000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.980000 0.000000 0.000000 0.020000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.860000 0.000000 0.140000 0.160000 0.000000 0.840000 0.000000 0.000000 0.000000 0.980000 0.020000 0.020000 0.000000 0.980000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTAATTTTTTGTATTTTTAGTAGAGACGGG MEME-1 regular expression -------------------------------------------------------------------------------- GCTAATTTTTTGTATTTTTAGTAGAGACGGG -------------------------------------------------------------------------------- Time 981.92 secs. ******************************************************************************** ******************************************************************************** MOTIF CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 width = 31 sites = 50 llr = 1840 E-value = 1.8e-539 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :213277::::::::a:::::9::a:a:a:1 pos.-specific C 72:7:::::::::::::::::::::::::9: probability G 267::::::::::a:::::::1a::a:a::8 matrix T 112:8339aaaaa:a:aaaaa::a:::::1: bits 2.1 *** ******* ** * * 1.9 ***** ******* ** * * 1.7 ********************** 1.5 * ********************** Relative 1.3 * ************************ Entropy 1.1 *************************** (53.1 bits) 0.9 * **************************** 0.6 * ***************************** 0.4 * ***************************** 0.2 ******************************* 0.0 ------------------------------- Multilevel CGGCTAATTTTTTGTATTTTTAGTAGAGACG consensus G A TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr5:98303374-98303474 - 2 6.89e-20 CCACCGTTCC CGGCTAATTTTTTGTATTTTTAGTAGAGACG G chr2:64353807-64353907 - 2 6.89e-20 CCACCACGCT CGGCTAATTTTTTGTATTTTTAGTAGAGACG G chr2:133268479-133268579 + 69 6.89e-20 ccaccgcgcc cggctaattttttgtatttttagtagagacg g chr3:190576831-190576931 - 2 6.89e-20 CCACCGCGCC CGGCTAATTTTTTGTATTTTTAGTAGAGACG G chr2:112780755-112780855 - 2 6.89e-20 CCACTGTTCC CGGCTAATTTTTTGTATTTTTAGTAGAGACG G chr7:137149714-137149814 + 69 6.89e-20 ccaccacgcc cggctaattttttgtatttttagtagagacg g chr8:9005504-9005604 + 69 6.89e-20 ggcgcccgcc cggctaattttttgtatttttagtagagacg g chr6:108096365-108096465 - 2 3.79e-19 CCACCACGCC CAGCTAATTTTTTGTATTTTTAGTAGAGACG G chr3:39917924-39918024 + 69 3.79e-19 ccaccacgcc cagctaattttttgtatttttagtagagacg g chr1:38484730-38484830 - 1 8.14e-19 CCACTGCACC CGGCTAATTTTTTGTATTTTTAGTAGAGATG chr8:38068836-38068936 + 70 8.14e-19 ccaccttgcc cggctaattttttgtatttttagtagagatg chr5:111005145-111005245 - 2 1.38e-18 CCACCTCGCC TGGCTAATTTTTTGTATTTTTAGTAGAGACG G chr7:1075608-1075708 + 70 3.83e-18 ccaccactcc cagctaattttttgtatttttagtagagatg chr1:23991397-23991497 + 69 3.83e-18 ccactgcgcc cagctaattttttgtatttttagtagagatg g chr6:42828131-42828231 - 2 3.83e-18 CCACCGCGCC CAGCTAATTTTTTGTATTTTTAGTAGAGATG G chr3:166513676-166513776 + 68 3.83e-18 ccactgcgcc cagctaattttttgtatttttagtagagatg ag chr1:23788373-23788473 - 1 4.11e-18 CCACCGCACC CGGCTAATTTTTTGTATTTTTGGTAGAGACG chr4:75720233-75720333 - 4 4.11e-18 CCACCGCGCC CGGCTAATTTTTTGTATTTTTGGTAGAGACG GAG chr5:97008662-97008762 + 69 4.82e-18 ccaccatgcc cggctaattttttatatttttagtagagacg g chr3:82859835-82859935 - 2 4.82e-18 CCAACACGCC GGGCTAATTTTTTGTATTTTTAGTAGAGATG G chr6:111525679-111525779 - 3 4.82e-18 CCACCGCGCT CGGCTAATTTTTTGTATTTTTAGTAGAGACC GG chr3:170347183-170347283 + 66 4.82e-18 ccaccatgcc cggctaattttttgtatttttagtagagacc gggt chr4:90423821-90423921 - 3 4.82e-18 CCACTGTGCC CAGCTAATTTTTTGTATTTTTAGTAGAGACA AG chr2:35919714-35919814 - 3 6.03e-18 CCACCACGCC CGGCTAATTTTTTGTATTTTTAGTACAGACG GG chr1:93104874-93104974 - 4 6.56e-18 CCACTACACC CGGCTAACTTTTTGTATTTTTAGTAGAGACG GGG chr2:70124689-70124789 - 4 6.56e-18 TCACTACGCC CGGCTAACTTTTTGTATTTTTAGTAGAGACG GGG chr7:109040406-109040506 - 8 8.21e-18 CCACTGCGCC CGGCTAATTTTTTGTATTTTTAGTAGAGACT GCGTTTC chr1:64794128-64794228 - 3 1.01e-17 CCACCACGCC CGGCTAATTTTTTGTATTTTTAGTAGAAACG GG chr1:16185573-16185673 + 69 1.33e-17 ccaccacgcc cggctaagtttttgtatttttagtagagacg g chr2:182532676-182532776 - 1 2.59e-17 CCACCGCGCC CGTATAATTTTTTGTATTTTTGGTAGAGACG chr2:23572696-23572796 + 70 3.43e-17 cctccgcgcc tggctaattttttatatttttagtagagacg chr2:197598946-197599046 + 70 6.18e-17 ccaccatgcc cggctcattttttgtatttttagtagagaca chr2:69998460-69998560 - 1 6.18e-17 CCGTGCCCGG CTAATTTTTTTTTGTATTTTTAGTAGAGACG chr3:50796044-50796144 + 67 6.18e-17 ccatgcccag ctaatttttttttgtatttttagtagagacg ggg chr7:87994832-87994932 + 70 6.18e-17 ccgcgcctgg ctaatttttttttgtatttttagtagagacg chr6:124482852-124482952 - 7 7.89e-17 CCACCACGCC CGGCTAATTTTTGGTATTTTTAGTAGAGACA GGGTTT chr2:41941478-41941578 - 3 8.60e-17 CCACTGTCAC TGGCTAATCTTTTGTATTTTTAGTAGAGACG GG chr1:171760649-171760749 + 69 1.36e-16 accgcgcccg gctaaatttttttgtatttttagtagagacg g chr7:138357567-138357667 + 66 1.58e-16 ccaccatgcc cggctaattttttgtatttttaatacagacg gggt chr2:104339521-104339621 + 69 2.58e-16 ccgcgcccga ctaatttttttttgtatttttagtagagaca g chr1:121530711-121530811 + 68 2.58e-16 ccacccccag ctaatttttttttgtatttttagtagagaca gg chr2:102031669-102031769 + 62 2.95e-16 accgtgcctg gctaattttttttgtatttttagtagagacg gggtttca chr4:183509448-183509548 + 67 2.95e-16 actgcgcccg gctaattttttttgtatttttagtagagacg ggg chr6:137362214-137362314 - 2 2.95e-16 ACCGCTCCCG GCTAATTTTTTTTGTATTTTTAGTAGAGACG G chr6:121409268-121409368 + 70 2.95e-16 accacacccg gctaattttttttgtatttttagtagagacg chr1:88664286-88664386 + 69 2.95e-16 accgcgcccg gctaattttttttgtatttttagtagagacg g chr6:32652010-32652110 - 5 2.95e-16 ACCGTGCCCA GCTAATTTTTTTTGTATTTTTAGTAGAGACG GGGT chr6:118786071-118786171 - 4 2.95e-16 ACCGCGCCCG GCTAATTTTTTTTGTATTTTTAGTAGAGACG GGG chr8:80478982-80479082 - 18 6.72e-16 CATGCCCGGC TAATTTTTTTTTTGTATTTTTAGTAGAGACG GGGTTTCATC chr5:150432372-150432472 - 21 9.54e-16 CACCACGCCC GGCTAATTTTTTTGTATTTTTAGTAGAGACG GGGTTTCACC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr5:98303374-98303474 6.9e-20 1_[-2]_68 chr2:64353807-64353907 6.9e-20 1_[-2]_68 chr2:133268479-133268579 6.9e-20 68_[+2]_1 chr3:190576831-190576931 6.9e-20 1_[-2]_68 chr2:112780755-112780855 6.9e-20 1_[-2]_68 chr7:137149714-137149814 6.9e-20 68_[+2]_1 chr8:9005504-9005604 6.9e-20 68_[+2]_1 chr6:108096365-108096465 3.8e-19 1_[-2]_68 chr3:39917924-39918024 3.8e-19 68_[+2]_1 chr1:38484730-38484830 8.1e-19 [-2]_69 chr8:38068836-38068936 8.1e-19 69_[+2] chr5:111005145-111005245 1.4e-18 1_[-2]_68 chr7:1075608-1075708 3.8e-18 69_[+2] chr1:23991397-23991497 3.8e-18 68_[+2]_1 chr6:42828131-42828231 3.8e-18 1_[-2]_68 chr3:166513676-166513776 3.8e-18 67_[+2]_2 chr1:23788373-23788473 4.1e-18 [-2]_69 chr4:75720233-75720333 4.1e-18 3_[-2]_66 chr5:97008662-97008762 4.8e-18 68_[+2]_1 chr3:82859835-82859935 4.8e-18 1_[-2]_68 chr6:111525679-111525779 4.8e-18 2_[-2]_67 chr3:170347183-170347283 4.8e-18 65_[+2]_4 chr4:90423821-90423921 4.8e-18 2_[-2]_67 chr2:35919714-35919814 6e-18 2_[-2]_67 chr1:93104874-93104974 6.6e-18 3_[-2]_66 chr2:70124689-70124789 6.6e-18 3_[-2]_66 chr7:109040406-109040506 8.2e-18 7_[-2]_62 chr1:64794128-64794228 1e-17 2_[-2]_67 chr1:16185573-16185673 1.3e-17 68_[+2]_1 chr2:182532676-182532776 2.6e-17 [-2]_69 chr2:23572696-23572796 3.4e-17 69_[+2] chr2:197598946-197599046 6.2e-17 69_[+2] chr2:69998460-69998560 6.2e-17 [-2]_69 chr3:50796044-50796144 6.2e-17 66_[+2]_3 chr7:87994832-87994932 6.2e-17 69_[+2] chr6:124482852-124482952 7.9e-17 6_[-2]_63 chr2:41941478-41941578 8.6e-17 2_[-2]_67 chr1:171760649-171760749 1.4e-16 68_[+2]_1 chr7:138357567-138357667 1.6e-16 65_[+2]_4 chr2:104339521-104339621 2.6e-16 68_[+2]_1 chr1:121530711-121530811 2.6e-16 67_[+2]_2 chr2:102031669-102031769 2.9e-16 61_[+2]_8 chr4:183509448-183509548 2.9e-16 66_[+2]_3 chr6:137362214-137362314 2.9e-16 1_[-2]_68 chr6:121409268-121409368 2.9e-16 69_[+2] chr1:88664286-88664386 2.9e-16 68_[+2]_1 chr6:32652010-32652110 2.9e-16 4_[-2]_65 chr6:118786071-118786171 2.9e-16 3_[-2]_66 chr8:80478982-80479082 6.7e-16 17_[-2]_52 chr5:150432372-150432472 9.5e-16 20_[-2]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGGCTAATTTTTTGTATTTTTAGTAGAGACG width=31 seqs=50 chr5:98303374-98303474 ( 2) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr2:64353807-64353907 ( 2) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr2:133268479-133268579 ( 69) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr3:190576831-190576931 ( 2) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr2:112780755-112780855 ( 2) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr7:137149714-137149814 ( 69) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr8:9005504-9005604 ( 69) CGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr6:108096365-108096465 ( 2) CAGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr3:39917924-39918024 ( 69) CAGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr1:38484730-38484830 ( 1) CGGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr8:38068836-38068936 ( 70) CGGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr5:111005145-111005245 ( 2) TGGCTAATTTTTTGTATTTTTAGTAGAGACG 1 chr7:1075608-1075708 ( 70) CAGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr1:23991397-23991497 ( 69) CAGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr6:42828131-42828231 ( 2) CAGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr3:166513676-166513776 ( 68) CAGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr1:23788373-23788473 ( 1) CGGCTAATTTTTTGTATTTTTGGTAGAGACG 1 chr4:75720233-75720333 ( 4) CGGCTAATTTTTTGTATTTTTGGTAGAGACG 1 chr5:97008662-97008762 ( 69) CGGCTAATTTTTTATATTTTTAGTAGAGACG 1 chr3:82859835-82859935 ( 2) GGGCTAATTTTTTGTATTTTTAGTAGAGATG 1 chr6:111525679-111525779 ( 3) CGGCTAATTTTTTGTATTTTTAGTAGAGACC 1 chr3:170347183-170347283 ( 66) CGGCTAATTTTTTGTATTTTTAGTAGAGACC 1 chr4:90423821-90423921 ( 3) CAGCTAATTTTTTGTATTTTTAGTAGAGACA 1 chr2:35919714-35919814 ( 3) CGGCTAATTTTTTGTATTTTTAGTACAGACG 1 chr1:93104874-93104974 ( 4) CGGCTAACTTTTTGTATTTTTAGTAGAGACG 1 chr2:70124689-70124789 ( 4) CGGCTAACTTTTTGTATTTTTAGTAGAGACG 1 chr7:109040406-109040506 ( 8) CGGCTAATTTTTTGTATTTTTAGTAGAGACT 1 chr1:64794128-64794228 ( 3) CGGCTAATTTTTTGTATTTTTAGTAGAAACG 1 chr1:16185573-16185673 ( 69) CGGCTAAGTTTTTGTATTTTTAGTAGAGACG 1 chr2:182532676-182532776 ( 1) CGTATAATTTTTTGTATTTTTGGTAGAGACG 1 chr2:23572696-23572796 ( 70) TGGCTAATTTTTTATATTTTTAGTAGAGACG 1 chr2:197598946-197599046 ( 70) CGGCTCATTTTTTGTATTTTTAGTAGAGACA 1 chr2:69998460-69998560 ( 1) CTAATTTTTTTTTGTATTTTTAGTAGAGACG 1 chr3:50796044-50796144 ( 67) CTAATTTTTTTTTGTATTTTTAGTAGAGACG 1 chr7:87994832-87994932 ( 70) CTAATTTTTTTTTGTATTTTTAGTAGAGACG 1 chr6:124482852-124482952 ( 7) CGGCTAATTTTTGGTATTTTTAGTAGAGACA 1 chr2:41941478-41941578 ( 3) TGGCTAATCTTTTGTATTTTTAGTAGAGACG 1 chr1:171760649-171760749 ( 69) GCTAAATTTTTTTGTATTTTTAGTAGAGACG 1 chr7:138357567-138357667 ( 66) CGGCTAATTTTTTGTATTTTTAATACAGACG 1 chr2:104339521-104339621 ( 69) CTAATTTTTTTTTGTATTTTTAGTAGAGACA 1 chr1:121530711-121530811 ( 68) CTAATTTTTTTTTGTATTTTTAGTAGAGACA 1 chr2:102031669-102031769 ( 62) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr4:183509448-183509548 ( 67) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr6:137362214-137362314 ( 2) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr6:121409268-121409368 ( 70) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr1:88664286-88664386 ( 69) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr6:32652010-32652110 ( 5) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr6:118786071-118786171 ( 4) GCTAATTTTTTTTGTATTTTTAGTAGAGACG 1 chr8:80478982-80479082 ( 18) TAATTTTTTTTTTGTATTTTTAGTAGAGACG 1 chr5:150432372-150432472 ( 21) GGCTAATTTTTTTGTATTTTTAGTAGAGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 11.3032 E= 1.8e-539 -1229 140 -45 -151 -51 -77 109 -118 -92 -377 132 -34 30 132 -1229 -251 -34 -1229 -1229 185 166 -377 -1229 19 162 -1229 -1229 40 -1229 -277 -377 205 -1229 -377 -1229 211 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -377 211 -251 -1229 182 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 205 -1229 -218 -1229 -350 -1229 185 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -277 182 -1229 214 -1229 -1229 -1229 -350 -1229 185 -1229 214 -1229 -1229 -1229 -1229 166 -1229 -70 -118 -277 162 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 1.8e-539 0.000000 0.720000 0.200000 0.080000 0.160000 0.160000 0.580000 0.100000 0.120000 0.020000 0.680000 0.180000 0.280000 0.680000 0.000000 0.040000 0.180000 0.000000 0.000000 0.820000 0.720000 0.020000 0.000000 0.260000 0.700000 0.000000 0.000000 0.300000 0.000000 0.040000 0.020000 0.940000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.020000 0.980000 0.040000 0.000000 0.960000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.940000 0.000000 0.060000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.040000 0.960000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.860000 0.000000 0.140000 0.100000 0.040000 0.840000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGGCTAATTTTTTGTATTTTTAGTAGAGACG MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GG[CA]T[AT][AT]TTTTTTGTATTTTTAGTAGAGACG -------------------------------------------------------------------------------- Time 1944.88 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 width = 31 sites = 50 llr = 1805 E-value = 4.5e-524 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::2:822aaa8a:a2aaaaaa1:91::2:: pos.-specific C :a:72:8::::::2:8::::::::::97::: probability G :::::::::::::::::::::::::91:7aa matrix T a:a:82:7:::2:8::::::::9a1::31:: bits 2.1 * ** ***** * 1.9 *** *** * * ****** * * 1.7 *** *** * * ********* ** 1.5 *** ***** * ********** ** Relative 1.3 *** ** ******* *********** ** Entropy 1.1 *** ************************ ** (52.1 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TCTCTACTAAAAATACAAAAAATTAGCCGGG consensus ACTAA C TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:224951644-224951744 - 70 6.89e-20 . TCTCTACTAAAAATACAAAAAATTAGCCGGG CATTGGTGGT chr5:83016630-83016730 - 70 6.89e-20 . TCTCTACTAAAAATACAAAAAATTAGCCGGG CACAGTGGCG chr5:168367322-168367422 - 70 6.89e-20 . TCTCTACTAAAAATACAAAAAATTAGCCGGG CGCAGTGGCG chr6:118594587-118594687 + 2 6.89e-20 a tctctactaaaaatacaaaaaattagccggg tgtggtggca chr8:17656789-17656889 + 1 6.89e-20 . tctctactaaaaatacaaaaaattagccggg tgtggtggtg chr7:129002770-129002870 + 2 6.89e-20 a tctctactaaaaatacaaaaaattagccggg cgtggtgtca chr1:11008673-11008773 + 1 6.89e-20 . tctctactaaaaatacaaaaaattagccggg cgtggtggcg chr4:163349834-163349934 + 4 1.26e-19 cgg tctctactaaaaatacaaaaaattagctggg cgcagtggcg chr3:44562700-44562800 + 2 1.26e-19 a tctctactaaaaatacaaaaaattagctggg catggcggcg chr6:17939770-17939870 + 1 1.26e-19 . tctctactaaaaatacaaaaaattagctggg cgtggtggcg chr6:106462161-106462261 - 70 1.26e-19 . TCTCTACTAAAAATACAAAAAATTAGCTGGG CATGGTGGCG chr3:58460762-58460862 + 3 1.26e-19 gg tctctactaaaaatacaaaaaattagctggg cgtggtggcg chr4:167695130-167695230 + 1 2.98e-19 . tctctactaaaaatacaaaaaattagccagg cgccgtggca chr7:48596528-48596628 + 2 2.98e-19 a tctctactaaaaatacaaaaaattagccagg cgtggtggcg chr3:57001915-57002015 - 70 2.98e-19 . TCTCTACTAAAAATACAAAAAATTAGCCAGG CACGGTGGTG chr7:20769357-20769457 - 69 2.98e-19 G TCTCTACTAAAAATACAAAAAATTAGCCAGG CGCGGTGGCT chr7:75783518-75783618 + 2 2.98e-19 a tctctactaaaaatacaaaaaattagccagg agtggtggca chr6:5536044-5536144 - 70 2.98e-19 . TCTCTACTAAAAATACAAAAAATTAGCCAGG CATGGCGGGA chr3:149675715-149675815 - 67 1.43e-18 TCA TCTCTACTAAAAACACAAAAAATTAGCTGGG CATGGTGGTG chr1:228330928-228331028 - 69 1.81e-18 G TCTCTACTAAAAATACAAAAAATTAGCCTGG TGTGGTTGCC chr3:13307603-13307703 + 1 4.41e-18 . tctgtactaaaaatacaaaaaattagccggg cgtggtggtg chr2:232784382-232784482 - 70 4.87e-18 . TCTCTACTAAAAATAGAAAAAATTAGCCGGG CGCGGTGGCG chr6:6404699-6404799 - 70 7.13e-18 . TCTCTACTAAAAATACAAAAAATTAGTTGGG CGTGGTGGTG chr6:142338013-142338113 - 69 7.13e-18 A TCTCTACTAAAAATACAAAAAGTTAGCCGGG CGTAGTGGCA chr3:39408817-39408917 + 1 7.13e-18 . tctctactaaaaatacaaaaaattagttggg cgtgggggcg chr5:14822764-14822864 + 8 7.71e-18 aaccctg tctctactaaaaatagaaaaaattagctggg cgcagtggtg chr4:8659669-8659769 - 69 1.11e-17 G TCTCTACGAAAAATACAAAAAATTAGCCGGG CGTGGTGATG chr5:60656159-60656259 - 66 1.25e-17 CCCG TCTCTACTGAAAATACAAAAAATTAGCTGGG TGCAGTGGTG chr1:30752819-30752919 - 65 1.25e-17 CCCTG TCTTTACTAAAAATACAAAAAATTAGCTGGG CATGATGGCG chr5:29375638-29375738 - 70 1.41e-17 . TCTGTACTAAAAATACAAAAAATTAGCCAGG CGCGGTGGTG chr5:138134729-138134829 - 59 1.59e-17 CGAAACCCCG TCTCTACTAAAACTACAAAAAATTAGCCGGG CGCAGTGGCG chr3:137126198-137126298 - 70 2.34e-17 . TCTCTACTAAAAATACAAAAAACTAGCTGGG CGCAGTGGCA chr1:167285322-167285422 + 7 2.34e-17 acccag tctctactgaaaatacaaaaaattagccagg cgcagcagca chr3:94045680-94045780 + 1 4.49e-17 . tctctactaaaaatccaaaaaattagccagg cgtggtggtg chr6:78678869-78678969 + 3 4.49e-17 ca tctctaacaaaaatacaaaaaattagctggg catggtggca chr3:48873697-48873797 + 3 8.49e-17 tc tctactaaaaaaatacaaaaaattagccggg cacggtggca chr5:65895558-65895658 + 6 3.08e-16 ccccg cctctactaaaaatacaaaaagttagccggg cgtagtggcg chr3:81342349-81342449 + 1 1.77e-15 . gctactaaaaaaatacaaaaaattagccggg cgtggtggcc chr5:78081300-78081400 - 69 2.14e-15 C TCTACTAAAAATACAAAAAAAATTAGCCGGG CGCAGTGGCG chr2:233609005-233609105 - 68 2.14e-15 TC TCTACTAAAAATACAAAAAAAATTAGCCGGG CGCAGTGGCG chr5:138383974-138384074 + 2 2.14e-15 c tctactaaaaatacaaaaaaaattagccggg cgcggtggcg chr1:151111411-151111511 - 70 2.14e-15 . TCTACTAAAAATACAAAAAAAATTAGCCGGG CGTGGTGGCA chr1:16962263-16962363 + 2 2.93e-15 c tctactaaaaatacaaaaaaaattagctggg cacagtggca chr5:79153114-79153214 - 66 2.93e-15 CGTC TCTACTAAAAATACAAAAAAAATTAGCTGGG GGCATGGTGG chr4:183339070-183339170 - 64 2.93e-15 CCCGTC TCTACTAAAAATACAAAAAAAATTAGCTGGG CGCGGTGGCG chr8:38249105-38249205 - 68 4.17e-15 TC TCTACTAAAAATACAAAAAAAATTAGCCAGG CGCAGTGGCA chr4:2985130-2985230 + 6 1.03e-14 ccccg tctctactaaaaatacaaaaaaattagctgg gtgcggtgac chr5:122932588-122932688 + 1 1.03e-14 . tctctactaaaaatacaaaaaaattagctgg gcatggtggc chr7:67759204-67759304 - 69 1.75e-14 C TCTACTAAAAATACAAAAAAAATTAGCCGGT CGTGGTGGCA chr5:146175557-146175657 + 1 2.04e-14 . tctctactaaaaatacaaaaaaattagccgg gcatggtggc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:224951644-224951744 6.9e-20 69_[-3] chr5:83016630-83016730 6.9e-20 69_[-3] chr5:168367322-168367422 6.9e-20 69_[-3] chr6:118594587-118594687 6.9e-20 1_[+3]_68 chr8:17656789-17656889 6.9e-20 [+3]_69 chr7:129002770-129002870 6.9e-20 1_[+3]_68 chr1:11008673-11008773 6.9e-20 [+3]_69 chr4:163349834-163349934 1.3e-19 3_[+3]_66 chr3:44562700-44562800 1.3e-19 1_[+3]_68 chr6:17939770-17939870 1.3e-19 [+3]_69 chr6:106462161-106462261 1.3e-19 69_[-3] chr3:58460762-58460862 1.3e-19 2_[+3]_67 chr4:167695130-167695230 3e-19 [+3]_69 chr7:48596528-48596628 3e-19 1_[+3]_68 chr3:57001915-57002015 3e-19 69_[-3] chr7:20769357-20769457 3e-19 68_[-3]_1 chr7:75783518-75783618 3e-19 1_[+3]_68 chr6:5536044-5536144 3e-19 69_[-3] chr3:149675715-149675815 1.4e-18 66_[-3]_3 chr1:228330928-228331028 1.8e-18 68_[-3]_1 chr3:13307603-13307703 4.4e-18 [+3]_69 chr2:232784382-232784482 4.9e-18 69_[-3] chr6:6404699-6404799 7.1e-18 69_[-3] chr6:142338013-142338113 7.1e-18 68_[-3]_1 chr3:39408817-39408917 7.1e-18 [+3]_69 chr5:14822764-14822864 7.7e-18 7_[+3]_62 chr4:8659669-8659769 1.1e-17 68_[-3]_1 chr5:60656159-60656259 1.2e-17 65_[-3]_4 chr1:30752819-30752919 1.2e-17 64_[-3]_5 chr5:29375638-29375738 1.4e-17 69_[-3] chr5:138134729-138134829 1.6e-17 58_[-3]_11 chr3:137126198-137126298 2.3e-17 69_[-3] chr1:167285322-167285422 2.3e-17 6_[+3]_63 chr3:94045680-94045780 4.5e-17 [+3]_69 chr6:78678869-78678969 4.5e-17 2_[+3]_67 chr3:48873697-48873797 8.5e-17 2_[+3]_67 chr5:65895558-65895658 3.1e-16 5_[+3]_64 chr3:81342349-81342449 1.8e-15 [+3]_69 chr5:78081300-78081400 2.1e-15 68_[-3]_1 chr2:233609005-233609105 2.1e-15 67_[-3]_2 chr5:138383974-138384074 2.1e-15 1_[+3]_68 chr1:151111411-151111511 2.1e-15 69_[-3] chr1:16962263-16962363 2.9e-15 1_[+3]_68 chr5:79153114-79153214 2.9e-15 65_[-3]_4 chr4:183339070-183339170 2.9e-15 63_[-3]_6 chr8:38249105-38249205 4.2e-15 67_[-3]_2 chr4:2985130-2985230 1e-14 5_[+3]_64 chr5:122932588-122932688 1e-14 [+3]_69 chr7:67759204-67759304 1.7e-14 68_[-3]_1 chr5:146175557-146175657 2e-14 [+3]_69 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCTACTAAAAATACAAAAAATTAGCCGGG width=31 seqs=50 chr1:224951644-224951744 ( 70) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr5:83016630-83016730 ( 70) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr5:168367322-168367422 ( 70) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr6:118594587-118594687 ( 2) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr8:17656789-17656889 ( 1) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr7:129002770-129002870 ( 2) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr1:11008673-11008773 ( 1) TCTCTACTAAAAATACAAAAAATTAGCCGGG 1 chr4:163349834-163349934 ( 4) TCTCTACTAAAAATACAAAAAATTAGCTGGG 1 chr3:44562700-44562800 ( 2) TCTCTACTAAAAATACAAAAAATTAGCTGGG 1 chr6:17939770-17939870 ( 1) TCTCTACTAAAAATACAAAAAATTAGCTGGG 1 chr6:106462161-106462261 ( 70) TCTCTACTAAAAATACAAAAAATTAGCTGGG 1 chr3:58460762-58460862 ( 3) TCTCTACTAAAAATACAAAAAATTAGCTGGG 1 chr4:167695130-167695230 ( 1) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr7:48596528-48596628 ( 2) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr3:57001915-57002015 ( 70) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr7:20769357-20769457 ( 69) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr7:75783518-75783618 ( 2) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr6:5536044-5536144 ( 70) TCTCTACTAAAAATACAAAAAATTAGCCAGG 1 chr3:149675715-149675815 ( 67) TCTCTACTAAAAACACAAAAAATTAGCTGGG 1 chr1:228330928-228331028 ( 69) TCTCTACTAAAAATACAAAAAATTAGCCTGG 1 chr3:13307603-13307703 ( 1) TCTGTACTAAAAATACAAAAAATTAGCCGGG 1 chr2:232784382-232784482 ( 70) TCTCTACTAAAAATAGAAAAAATTAGCCGGG 1 chr6:6404699-6404799 ( 70) TCTCTACTAAAAATACAAAAAATTAGTTGGG 1 chr6:142338013-142338113 ( 69) TCTCTACTAAAAATACAAAAAGTTAGCCGGG 1 chr3:39408817-39408917 ( 1) TCTCTACTAAAAATACAAAAAATTAGTTGGG 1 chr5:14822764-14822864 ( 8) TCTCTACTAAAAATAGAAAAAATTAGCTGGG 1 chr4:8659669-8659769 ( 69) TCTCTACGAAAAATACAAAAAATTAGCCGGG 1 chr5:60656159-60656259 ( 66) TCTCTACTGAAAATACAAAAAATTAGCTGGG 1 chr1:30752819-30752919 ( 65) TCTTTACTAAAAATACAAAAAATTAGCTGGG 1 chr5:29375638-29375738 ( 70) TCTGTACTAAAAATACAAAAAATTAGCCAGG 1 chr5:138134729-138134829 ( 59) TCTCTACTAAAACTACAAAAAATTAGCCGGG 1 chr3:137126198-137126298 ( 70) TCTCTACTAAAAATACAAAAAACTAGCTGGG 1 chr1:167285322-167285422 ( 7) TCTCTACTGAAAATACAAAAAATTAGCCAGG 1 chr3:94045680-94045780 ( 1) TCTCTACTAAAAATCCAAAAAATTAGCCAGG 1 chr6:78678869-78678969 ( 3) TCTCTAACAAAAATACAAAAAATTAGCTGGG 1 chr3:48873697-48873797 ( 3) TCTACTAAAAAAATACAAAAAATTAGCCGGG 1 chr5:65895558-65895658 ( 6) CCTCTACTAAAAATACAAAAAGTTAGCCGGG 1 chr3:81342349-81342449 ( 1) GCTACTAAAAAAATACAAAAAATTAGCCGGG 1 chr5:78081300-78081400 ( 69) TCTACTAAAAATACAAAAAAAATTAGCCGGG 1 chr2:233609005-233609105 ( 68) TCTACTAAAAATACAAAAAAAATTAGCCGGG 1 chr5:138383974-138384074 ( 2) TCTACTAAAAATACAAAAAAAATTAGCCGGG 1 chr1:151111411-151111511 ( 70) TCTACTAAAAATACAAAAAAAATTAGCCGGG 1 chr1:16962263-16962363 ( 2) TCTACTAAAAATACAAAAAAAATTAGCTGGG 1 chr5:79153114-79153214 ( 66) TCTACTAAAAATACAAAAAAAATTAGCTGGG 1 chr4:183339070-183339170 ( 64) TCTACTAAAAATACAAAAAAAATTAGCTGGG 1 chr8:38249105-38249205 ( 68) TCTACTAAAAATACAAAAAAAATTAGCCAGG 1 chr4:2985130-2985230 ( 6) TCTCTACTAAAAATACAAAAAAATTAGCTGG 1 chr5:122932588-122932688 ( 1) TCTCTACTAAAAATACAAAAAAATTAGCTGG 1 chr7:67759204-67759304 ( 69) TCTACTAAAAATACAAAAAAAATTAGCCGGT 1 chr5:146175557-146175657 ( 1) TCTCTACTAAAAATACAAAAAAATTAGCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 11.6165 E= 4.5e-524 -1229 -377 -377 208 -1229 187 -1229 -1229 -1229 -1229 -1229 214 -5 140 -277 -350 -1229 -31 -1229 178 178 -1229 -1229 -5 8 148 -1229 -1229 -5 -377 -377 170 208 -1229 -277 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 185 -1229 -1229 -34 211 -377 -1229 -1229 -1229 -45 -1229 181 211 -377 -1229 -1229 -34 152 -277 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 208 -1229 -277 -1229 -192 -377 -1229 202 -1229 -1229 -1229 214 205 -1229 -1229 -192 -192 -1229 179 -1229 -1229 172 -218 -251 -1229 132 -1229 49 -19 -377 140 -192 -1229 -1229 187 -1229 -1229 -1229 185 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 4.5e-524 0.000000 0.020000 0.020000 0.960000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.220000 0.720000 0.040000 0.020000 0.000000 0.220000 0.000000 0.780000 0.780000 0.000000 0.000000 0.220000 0.240000 0.760000 0.000000 0.000000 0.220000 0.020000 0.020000 0.740000 0.960000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.820000 0.000000 0.000000 0.180000 0.980000 0.020000 0.000000 0.000000 0.000000 0.200000 0.000000 0.800000 0.980000 0.020000 0.000000 0.000000 0.180000 0.780000 0.040000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.060000 0.020000 0.000000 0.920000 0.000000 0.000000 0.000000 1.000000 0.940000 0.000000 0.000000 0.060000 0.060000 0.000000 0.940000 0.000000 0.000000 0.900000 0.060000 0.040000 0.000000 0.680000 0.000000 0.320000 0.200000 0.020000 0.720000 0.060000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCTACTAAAAATACAAAAAATTAGCCGGG MEME-3 regular expression -------------------------------------------------------------------------------- TCT[CA][TC][AT][CA][TA]AAAAA[TC]ACAAAAAATTAGC[CT][GA]GG -------------------------------------------------------------------------------- Time 2892.58 secs. ******************************************************************************** ******************************************************************************** MOTIF YTWWTTTTTTGTATTTTTAGTA MEME-4 width = 22 sites = 50 llr = 1441 E-value = 2.1e-387 ******************************************************************************** -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1374::::::::a:::::a1:a pos.-specific C 4::::::::::::::::::::: probability G ::::::::::a::::::::9:: matrix T 5736aaaaaa:a:aaaaa::a: bits 2.1 ****** ******* ** 1.9 ****** ******** ** 1.7 *************** ** 1.5 ****************** Relative 1.3 ** ****************** Entropy 1.1 ********************* (41.6 bits) 0.9 ********************* 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel TTATTTTTTTGTATTTTTAGTA consensus CATA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr3:64774946-64775046 + 77 5.32e-14 cgatgcccag ctaattttttgtatttttagta ga chr2:91491856-91491956 + 76 5.32e-14 ctgcacccag ctaattttttgtatttttagta gag chr3:65784435-65784535 - 4 5.32e-14 CCGCGCCCAG CTAATTTTTTGTATTTTTAGTA GAG chr5:178813802-178813902 - 7 5.32e-14 CTAATTTTTT TTTTTTTTTTGTATTTTTAGTA CACACG chr2:215200854-215200954 - 3 5.32e-14 CCGTGCCTGG CTAATTTTTTGTATTTTTAGTA GA chr5:110021015-110021115 + 78 5.32e-14 gcctgactaa ttttttttttgtatttttagta g chr5:174628518-174628618 + 76 5.32e-14 ccacgcctgg ctaattttttgtatttttagta gag chr6:20375102-20375202 + 75 5.32e-14 cccagctaat ttttttttttgtatttttagta gaga chr6:132079627-132079727 - 5 5.32e-14 GCTAATTTTT TTTTTTTTTTGTATTTTTAGTA GAGA chr8:35158204-35158304 - 4 5.32e-14 CTGCACCTGG CTAATTTTTTGTATTTTTAGTA GAG chr7:143939749-143939849 + 75 5.32e-14 aatttttttt ttttttttttgtatttttagta gaga chr7:111684260-111684360 + 77 5.32e-14 ccatgcctgg ctaattttttgtatttttagta ga chr5:7443370-7443470 - 4 5.32e-14 CCACGCCCAG CTAATTTTTTGTATTTTTAGTA GAG chr5:23910327-23910427 - 3 5.32e-14 CCACGCCCGG CTAATTTTTTGTATTTTTAGTA GA chr1:28454264-28454364 + 77 5.32e-14 ctgcgcccgg ctaattttttgtatttttagta ga chr2:48231432-48231532 - 4 5.32e-14 CCACGCCTGG CTAATTTTTTGTATTTTTAGTA GAG chr3:185963527-185963627 - 1 5.32e-14 CTAATTTTTT TTTTTTTTTTGTATTTTTAGTA chr3:23273257-23273357 - 5 5.32e-14 GCCCGGCTAA TTTTTTTTTTGTATTTTTAGTA GAGA chr3:171913148-171913248 + 77 5.32e-14 ccccccccag ctaattttttgtatttttagta ga chr6:37087307-37087407 + 76 5.32e-14 tttttttttt ttttttttttgtatttttagta gag chr1:166668263-166668363 + 77 5.32e-14 ccacgcccgg ctaattttttgtatttttagta ga chr8:90875730-90875830 - 11 5.32e-14 TAATTTTTTT TTTTTTTTTTGTATTTTTAGTA GAGATGGGGT chr2:190688827-190688927 + 76 5.32e-14 ctgcacctgg ctaattttttgtatttttagta gag chr1:12651828-12651928 + 74 5.32e-14 cagctaattt ttttttttttgtatttttagta gagac chr5:55666746-55666846 - 3 5.32e-14 CCACGCCCGG CTAATTTTTTGTATTTTTAGTA GA chr6:17272373-17272473 + 77 5.32e-14 ccatgcccag ctaattttttgtatttttagta ga chr1:199979482-199979582 + 75 5.32e-14 gctaattttt ttttttttttgtatttttagta gaga chr6:37032604-37032704 + 73 7.48e-14 tgcgctgggc taatttttttgtatttttagta gagaca chr1:144924458-144924558 - 5 7.48e-14 GCCCGGCTAA CTTTTTTTTTGTATTTTTAGTA GAGA chr5:3098303-3098403 - 4 7.48e-14 CACACCCAGC TAATTTTTTTGTATTTTTAGTA GAG chr7:148955649-148955749 + 78 7.48e-14 cacgcccagc taatttttttgtatttttagta g chr3:103451911-103452011 - 24 7.48e-14 CGCGCCAGGC TAATTTTTTTGTATTTTTAGTA GAGATGGAGT chr6:34481400-34481500 - 5 7.48e-14 CACGCCTGGC TAATTTTTTTGTATTTTTAGTA GAGA chr7:34487034-34487134 - 2 7.48e-14 GCCCGGCTAA CTTTTTTTTTGTATTTTTAGTA G chr6:98219531-98219631 + 70 7.48e-14 cgcacacggc taatttttttgtatttttagta gagatgggg chr2:163968322-163968422 - 2 7.48e-14 CATGCCCAGC TAATTTTTTTGTATTTTTAGTA G chr6:22057046-22057146 + 75 7.48e-14 cacgcctggc taatttttttgtatttttagta gaga chr3:47733604-47733704 - 4 7.48e-14 CACGCCTTGC TAATTTTTTTGTATTTTTAGTA GAG chr5:34293164-34293264 + 77 7.48e-14 cacgccaggc taatttttttgtatttttagta ga chr7:57541951-57542051 + 76 1.40e-13 ccacgaccgg caaattttttgtatttttagta gag chr6:158598661-158598761 + 77 1.81e-13 tcacgcccag ataattttttgtatttttagta ga chr4:87010805-87010905 - 3 2.03e-13 CACCCGGCTG ATTTTTTTTTGTATTTTTAGTA GA chr3:136376788-136376888 + 75 2.03e-13 tgcccggcta atttttttttgtatttttagta caga chr2:107936128-107936228 - 4 2.77e-13 CCACGCCTGG CTAATTTTTTGTATTTTTAATA GAG chr4:40464618-40464718 - 3 2.77e-13 ACCCGGCTAA TTTTTTTTTTGTATTTTTAATA GA chr3:72703566-72703666 - 4 2.77e-13 CCGCGCCCAG CTAATTTTTTGTATTTTTAATA GAG chr2:41313482-41313582 + 79 2.98e-13 gcgcccggct aattttttttgtatttttagta chr1:71656400-71656500 + 77 4.40e-13 ccgtgcccgt ctaattttttgtatttttggta ga chr1:247030741-247030841 - 7 5.11e-13 CAAGCCCAGC TAATTTTTTTGTATTTTTGGTA GAGATG chr4:177807431-177807531 - 4 5.73e-13 CACGCCCGGC TAATTTTTTTTTATTTTTAGTA GAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:64774946-64775046 5.3e-14 76_[+4]_2 chr2:91491856-91491956 5.3e-14 75_[+4]_3 chr3:65784435-65784535 5.3e-14 3_[-4]_75 chr5:178813802-178813902 5.3e-14 6_[-4]_72 chr2:215200854-215200954 5.3e-14 2_[-4]_76 chr5:110021015-110021115 5.3e-14 77_[+4]_1 chr5:174628518-174628618 5.3e-14 75_[+4]_3 chr6:20375102-20375202 5.3e-14 74_[+4]_4 chr6:132079627-132079727 5.3e-14 4_[-4]_74 chr8:35158204-35158304 5.3e-14 3_[-4]_75 chr7:143939749-143939849 5.3e-14 74_[+4]_4 chr7:111684260-111684360 5.3e-14 76_[+4]_2 chr5:7443370-7443470 5.3e-14 3_[-4]_75 chr5:23910327-23910427 5.3e-14 2_[-4]_76 chr1:28454264-28454364 5.3e-14 76_[+4]_2 chr2:48231432-48231532 5.3e-14 3_[-4]_75 chr3:185963527-185963627 5.3e-14 [-4]_78 chr3:23273257-23273357 5.3e-14 4_[-4]_74 chr3:171913148-171913248 5.3e-14 76_[+4]_2 chr6:37087307-37087407 5.3e-14 75_[+4]_3 chr1:166668263-166668363 5.3e-14 76_[+4]_2 chr8:90875730-90875830 5.3e-14 10_[-4]_68 chr2:190688827-190688927 5.3e-14 75_[+4]_3 chr1:12651828-12651928 5.3e-14 73_[+4]_5 chr5:55666746-55666846 5.3e-14 2_[-4]_76 chr6:17272373-17272473 5.3e-14 76_[+4]_2 chr1:199979482-199979582 5.3e-14 74_[+4]_4 chr6:37032604-37032704 7.5e-14 72_[+4]_6 chr1:144924458-144924558 7.5e-14 4_[-4]_74 chr5:3098303-3098403 7.5e-14 3_[-4]_75 chr7:148955649-148955749 7.5e-14 77_[+4]_1 chr3:103451911-103452011 7.5e-14 23_[-4]_55 chr6:34481400-34481500 7.5e-14 4_[-4]_74 chr7:34487034-34487134 7.5e-14 1_[-4]_77 chr6:98219531-98219631 7.5e-14 69_[+4]_9 chr2:163968322-163968422 7.5e-14 1_[-4]_77 chr6:22057046-22057146 7.5e-14 74_[+4]_4 chr3:47733604-47733704 7.5e-14 3_[-4]_75 chr5:34293164-34293264 7.5e-14 76_[+4]_2 chr7:57541951-57542051 1.4e-13 75_[+4]_3 chr6:158598661-158598761 1.8e-13 76_[+4]_2 chr4:87010805-87010905 2e-13 2_[-4]_76 chr3:136376788-136376888 2e-13 74_[+4]_4 chr2:107936128-107936228 2.8e-13 3_[-4]_75 chr4:40464618-40464718 2.8e-13 2_[-4]_76 chr3:72703566-72703666 2.8e-13 3_[-4]_75 chr2:41313482-41313582 3e-13 78_[+4] chr1:71656400-71656500 4.4e-13 76_[+4]_2 chr1:247030741-247030841 5.1e-13 6_[-4]_72 chr4:177807431-177807531 5.7e-13 3_[-4]_75 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YTWWTTTTTTGTATTTTTAGTA width=22 seqs=50 chr3:64774946-64775046 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr2:91491856-91491956 ( 76) CTAATTTTTTGTATTTTTAGTA 1 chr3:65784435-65784535 ( 4) CTAATTTTTTGTATTTTTAGTA 1 chr5:178813802-178813902 ( 7) TTTTTTTTTTGTATTTTTAGTA 1 chr2:215200854-215200954 ( 3) CTAATTTTTTGTATTTTTAGTA 1 chr5:110021015-110021115 ( 78) TTTTTTTTTTGTATTTTTAGTA 1 chr5:174628518-174628618 ( 76) CTAATTTTTTGTATTTTTAGTA 1 chr6:20375102-20375202 ( 75) TTTTTTTTTTGTATTTTTAGTA 1 chr6:132079627-132079727 ( 5) TTTTTTTTTTGTATTTTTAGTA 1 chr8:35158204-35158304 ( 4) CTAATTTTTTGTATTTTTAGTA 1 chr7:143939749-143939849 ( 75) TTTTTTTTTTGTATTTTTAGTA 1 chr7:111684260-111684360 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr5:7443370-7443470 ( 4) CTAATTTTTTGTATTTTTAGTA 1 chr5:23910327-23910427 ( 3) CTAATTTTTTGTATTTTTAGTA 1 chr1:28454264-28454364 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr2:48231432-48231532 ( 4) CTAATTTTTTGTATTTTTAGTA 1 chr3:185963527-185963627 ( 1) TTTTTTTTTTGTATTTTTAGTA 1 chr3:23273257-23273357 ( 5) TTTTTTTTTTGTATTTTTAGTA 1 chr3:171913148-171913248 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr6:37087307-37087407 ( 76) TTTTTTTTTTGTATTTTTAGTA 1 chr1:166668263-166668363 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr8:90875730-90875830 ( 11) TTTTTTTTTTGTATTTTTAGTA 1 chr2:190688827-190688927 ( 76) CTAATTTTTTGTATTTTTAGTA 1 chr1:12651828-12651928 ( 74) TTTTTTTTTTGTATTTTTAGTA 1 chr5:55666746-55666846 ( 3) CTAATTTTTTGTATTTTTAGTA 1 chr6:17272373-17272473 ( 77) CTAATTTTTTGTATTTTTAGTA 1 chr1:199979482-199979582 ( 75) TTTTTTTTTTGTATTTTTAGTA 1 chr6:37032604-37032704 ( 73) TAATTTTTTTGTATTTTTAGTA 1 chr1:144924458-144924558 ( 5) CTTTTTTTTTGTATTTTTAGTA 1 chr5:3098303-3098403 ( 4) TAATTTTTTTGTATTTTTAGTA 1 chr7:148955649-148955749 ( 78) TAATTTTTTTGTATTTTTAGTA 1 chr3:103451911-103452011 ( 24) TAATTTTTTTGTATTTTTAGTA 1 chr6:34481400-34481500 ( 5) TAATTTTTTTGTATTTTTAGTA 1 chr7:34487034-34487134 ( 2) CTTTTTTTTTGTATTTTTAGTA 1 chr6:98219531-98219631 ( 70) TAATTTTTTTGTATTTTTAGTA 1 chr2:163968322-163968422 ( 2) TAATTTTTTTGTATTTTTAGTA 1 chr6:22057046-22057146 ( 75) TAATTTTTTTGTATTTTTAGTA 1 chr3:47733604-47733704 ( 4) TAATTTTTTTGTATTTTTAGTA 1 chr5:34293164-34293264 ( 77) TAATTTTTTTGTATTTTTAGTA 1 chr7:57541951-57542051 ( 76) CAAATTTTTTGTATTTTTAGTA 1 chr6:158598661-158598761 ( 77) ATAATTTTTTGTATTTTTAGTA 1 chr4:87010805-87010905 ( 3) ATTTTTTTTTGTATTTTTAGTA 1 chr3:136376788-136376888 ( 75) ATTTTTTTTTGTATTTTTAGTA 1 chr2:107936128-107936228 ( 4) CTAATTTTTTGTATTTTTAATA 1 chr4:40464618-40464718 ( 3) TTTTTTTTTTGTATTTTTAATA 1 chr3:72703566-72703666 ( 4) CTAATTTTTTGTATTTTTAATA 1 chr2:41313482-41313582 ( 79) AATTTTTTTTGTATTTTTAGTA 1 chr1:71656400-71656500 ( 77) CTAATTTTTTGTATTTTTGGTA 1 chr1:247030741-247030841 ( 7) TAATTTTTTTGTATTTTTGGTA 1 chr4:177807431-177807531 ( 4) TAATTTTTTTTTATTTTTAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 46859 bayes= 11.9796 E= 2.1e-387 -151 69 -1229 108 30 -1229 -1229 166 154 -1229 -1229 58 89 -1229 -1229 135 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 185 -350 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 -1229 -1229 214 208 -1229 -277 -1229 -192 -1229 179 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 2.1e-387 0.080000 0.440000 0.000000 0.480000 0.280000 0.000000 0.000000 0.720000 0.660000 0.000000 0.000000 0.340000 0.420000 0.000000 0.000000 0.580000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.980000 0.020000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.960000 0.000000 0.040000 0.000000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YTWWTTTTTTGTATTTTTAGTA MEME-4 regular expression -------------------------------------------------------------------------------- [TC][TA][AT][TA]TTTTTTGTATTTTTAGTA -------------------------------------------------------------------------------- Time 3802.20 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 width = 31 sites = 50 llr = 1837 E-value = 6.3e-541 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::1:::::::::1:a:a:2:a:::::2: pos.-specific C :1::::::::::::::::::8:::::a:7:9 probability G ::::::::::::::::9:a::89:a:::18: matrix T 99a9a99aaa9aaa991:::2::::a:a2:: bits 2.1 * * * 1.9 * * *** *** * * * * * 1.7 * * ************ *** ***** 1.5 ******************** ****** * Relative 1.3 ******************** ****** * Entropy 1.1 **************************** ** (53.0 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr3:169820535-169820635 + 1 6.89e-20 . ttttttttttttttttgagacggagtctcgc tctgtcgccc chr5:35594824-35594924 + 8 6.89e-20 ttctttc ttttttttttttttttgagacggagtctcgc tctgtcaccc chr3:194415661-194415761 + 1 6.89e-20 . ttttttttttttttttgagacggagtctcgc cctgtcgccc chr3:195424961-195425054 - 51 6.89e-20 TTTTTTTTTT TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr7:121934420-121934512 - 53 6.89e-20 TTTTTTTTT TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TTTGTTGCCC chr2:78558871-78558971 + 7 6.89e-20 tttttt ttttttttttttttttgagacggagtctcgc tctgtcgccc chr5:62499569-62499669 + 9 6.89e-20 tttttttt ttttttttttttttttgagacggagtctcgc tttgtcgccc chr1:9745142-9745242 - 65 6.89e-20 TTGTT TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTTGCCC chr2:120695345-120695445 + 13 1.26e-19 ctttttcttt ttttttttttttttttgagacggagtcttgc tctgtcgccc chr1:169637013-169637100 - 52 1.26e-19 TTTTT TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC TCTGTCGCCC chr1:92123686-92123786 - 69 1.26e-19 T TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC TCTGTCGCCC chr6:156288370-156288470 - 70 1.83e-19 . TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC TCTGTCGCCC chr2:15600718-15600818 + 19 1.83e-19 tttttttttt ttttttttttttttttgagacagagtctcgc tctgttgccc chr7:82608311-82608411 + 7 1.83e-19 tttttt ttttttttttttttttgagacagagtctcgc tctgttgcac chr7:79846340-79846430 + 7 1.83e-19 tttttt ttttttttttttttttgagacagagtctcgc tctgtcgccc chr1:121263348-121263448 - 67 2.41e-19 TTT TTTTTTTTTTTTTTTTGAGACGGAGTCTCAC TCTGTCGCCC chr5:63759491-63759589 + 9 3.46e-19 tttttttt ttttttttttttttttgagacagagtcttgc tctgtcgccc chr5:38016117-38016217 - 62 3.46e-19 TCTTTTTT TTTTTTTTTTTTTTTTGAGACAGAGTCTTGC TCTGTCACCC chr8:31763940-31764023 - 51 4.41e-19 TT TTTTTTTTTTTTTTTTGAGATGGAGTCTTGC TCTGTCACCC chr2:165832172-165832272 - 70 6.26e-19 . TTTTTTTTTTTTTTTTGAGACAGAGTCTCAC TCAGTCGTCC chr5:52000008-52000108 - 69 6.26e-19 T TTTTTTTTTTTTTTTTGAGACGGAGTCTGGC TCTGTCGCCC chr5:122083049-122083149 - 62 6.26e-19 TTTTTTTT TTTTTTTTTTTTTTTTGAGACGGAGTCTGGC TCTGTCACCC chr2:106813114-106813199 + 1 8.48e-19 . ttttttttttttttttgagatggagtctcac tctgtcgtcc chr2:200286276-200286373 - 66 1.71e-18 T TTCTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCACCC chr8:3248523-3248623 + 5 2.60e-18 tttt ttttttttttttttttgagacgtagtctcgc tctgtcgccc chr2:174190854-174190954 - 66 3.77e-18 TTTT TTTTTTTTTTTTTTTTGAGACGAAGTCTTGC TCTGTTGCCC chr4:101443931-101444021 + 6 3.77e-18 ttttt ttttttttttttttttgagacgaagtcttgc tctgctgccc chr1:166389433-166389533 - 69 5.00e-18 T TCTTTTTTTTTTTTTTGAGACAGAGTCTCGC TCTGTCACCC chr3:49259697-49259785 - 56 1.71e-17 TT TTTTTTTTTTTTCTTTGAGATGGAGTCTCGC TCTGTCGCCC chr3:133133681-133133781 + 5 2.33e-17 ttct ttcttttttttttttttagacggagtctcgc tgtatcaccc chr8:114036840-114036940 - 67 3.82e-17 TTT TTTTTTTTTTTTTTTGGAGACAGAGTCTCAC TCAGTTGCCC chr2:94700370-94700465 - 53 4.22e-17 TATTTTTATT TCTTTTTTTTTTTTTTGAGACGGAGTCTCGA TCTATCGCCC chr4:176392215-176392315 - 68 4.57e-17 TT TTTTTTTTTTGTTGTTGAGACGGAGTCTCGC TCTGTCGCCC chr1:67499888-67499988 + 9 5.01e-17 tttctttc tttttttcttttttttgagatggagtctcac tctgtcgccc chr5:135075278-135075362 + 5 5.34e-17 tttt ttttttttttttttgagagacggagtcttgc tctgttgccc chr3:8826545-8826645 + 7 9.58e-17 tttttt atttttatttttttttgagacggagtctcac tctgtcgccc chr7:99952591-99952689 - 60 1.06e-16 TTCCTTCT TTTTTTTTTTTTTTTTGAGACGGAGCCTCTC ACTGTCACCC chr8:39781007-39781094 + 4 1.60e-16 ttt tcttttttttttttttgagatggaatctcgc actctcgccc chr3:130320737-130320836 + 12 3.14e-16 tttgtttttt tttgttttttttttgtgagatggagtcttgc tctgtcgccc chr3:65244861-65244961 + 3 3.41e-16 tt tttcttttttttttttgagacggagtctcat tctgtcgccc chr3:26475665-26475765 + 1 3.69e-16 . ttttttttttttttttgagacggagactcag tctgacaccc chr8:26211657-26211757 - 60 3.98e-16 ATTTTTTTAT TTTTTATTTTATTTTTGAGACAGAGTCTGGC TCTGTCGCCC chr5:181174897-181174997 + 7 7.51e-16 tttatt tatttatttattttttgagacggagtctcgc tctgtcgccc chr2:198074546-198074646 - 68 1.12e-15 TG TTTGTTGTTTGTTTTTGAGACGGAGTCTCGC TCTGTCGCTC chr6:156636265-156636365 + 9 2.84e-15 tttttgtc gtttgtttttttttttgaaacggagtctcgc tctgtcgccc chr4:36155647-36155747 + 4 2.84e-15 tta tttttaattttttttttagaccgagtctcgc tgtgtctccc chr1:105325047-105325147 - 60 5.54e-15 TTTTTTTTTT TTTTTTTTTTTTTTAATAGAGGGAGTCTCGC TCTGTCGCCC chr5:98636476-98636576 - 64 1.13e-14 TTATTT ATTTTATTTTATTTTTGAGATGGAGTCACGC TCTGTCGCCT chr4:122956623-122956720 + 10 1.37e-13 ttttattta tgtatttatttattttgagatggagtcttgc tctgtcgccc chr6:157504208-157504308 + 53 4.53e-13 tttttgtatt ttttttttttttagtagagacggggttttac cgtggtctcg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:169820535-169820635 6.9e-20 [+5]_69 chr5:35594824-35594924 6.9e-20 7_[+5]_62 chr3:194415661-194415761 6.9e-20 [+5]_69 chr3:195424961-195425054 6.9e-20 50_[-5]_12 chr7:121934420-121934512 6.9e-20 52_[-5]_9 chr2:78558871-78558971 6.9e-20 6_[+5]_63 chr5:62499569-62499669 6.9e-20 8_[+5]_61 chr1:9745142-9745242 6.9e-20 64_[-5]_5 chr2:120695345-120695445 1.3e-19 12_[+5]_57 chr1:169637013-169637100 1.3e-19 51_[-5]_5 chr1:92123686-92123786 1.3e-19 68_[-5]_1 chr6:156288370-156288470 1.8e-19 69_[-5] chr2:15600718-15600818 1.8e-19 18_[+5]_51 chr7:82608311-82608411 1.8e-19 6_[+5]_63 chr7:79846340-79846430 1.8e-19 6_[+5]_53 chr1:121263348-121263448 2.4e-19 66_[-5]_3 chr5:63759491-63759589 3.5e-19 8_[+5]_59 chr5:38016117-38016217 3.5e-19 61_[-5]_8 chr8:31763940-31764023 4.4e-19 50_[-5]_2 chr2:165832172-165832272 6.3e-19 69_[-5] chr5:52000008-52000108 6.3e-19 68_[-5]_1 chr5:122083049-122083149 6.3e-19 61_[-5]_8 chr2:106813114-106813199 8.5e-19 [+5]_54 chr2:200286276-200286373 1.7e-18 65_[-5]_1 chr8:3248523-3248623 2.6e-18 4_[+5]_65 chr2:174190854-174190954 3.8e-18 65_[-5]_4 chr4:101443931-101444021 3.8e-18 5_[+5]_54 chr1:166389433-166389533 5e-18 68_[-5]_1 chr3:49259697-49259785 1.7e-17 55_[-5]_2 chr3:133133681-133133781 2.3e-17 4_[+5]_65 chr8:114036840-114036940 3.8e-17 66_[-5]_3 chr2:94700370-94700465 4.2e-17 52_[-5]_12 chr4:176392215-176392315 4.6e-17 67_[-5]_2 chr1:67499888-67499988 5e-17 8_[+5]_61 chr5:135075278-135075362 5.3e-17 4_[+5]_49 chr3:8826545-8826645 9.6e-17 6_[+5]_63 chr7:99952591-99952689 1.1e-16 59_[-5]_8 chr8:39781007-39781094 1.6e-16 3_[+5]_53 chr3:130320737-130320836 3.1e-16 11_[+5]_57 chr3:65244861-65244961 3.4e-16 2_[+5]_67 chr3:26475665-26475765 3.7e-16 [+5]_69 chr8:26211657-26211757 4e-16 59_[-5]_10 chr5:181174897-181174997 7.5e-16 6_[+5]_63 chr2:198074546-198074646 1.1e-15 67_[-5]_2 chr6:156636265-156636365 2.8e-15 8_[+5]_61 chr4:36155647-36155747 2.8e-15 3_[+5]_66 chr1:105325047-105325147 5.5e-15 59_[-5]_10 chr5:98636476-98636576 1.1e-14 63_[-5]_6 chr4:122956623-122956720 1.4e-13 9_[+5]_57 chr6:157504208-157504308 4.5e-13 52_[+5]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC width=31 seqs=50 chr3:169820535-169820635 ( 1) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr5:35594824-35594924 ( 8) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr3:194415661-194415761 ( 1) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr3:195424961-195425054 ( 51) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr7:121934420-121934512 ( 53) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr2:78558871-78558971 ( 7) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr5:62499569-62499669 ( 9) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr1:9745142-9745242 ( 65) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr2:120695345-120695445 ( 13) TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC 1 chr1:169637013-169637100 ( 52) TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC 1 chr1:92123686-92123786 ( 69) TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC 1 chr6:156288370-156288470 ( 70) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr2:15600718-15600818 ( 19) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr7:82608311-82608411 ( 7) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr7:79846340-79846430 ( 7) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr1:121263348-121263448 ( 67) TTTTTTTTTTTTTTTTGAGACGGAGTCTCAC 1 chr5:63759491-63759589 ( 9) TTTTTTTTTTTTTTTTGAGACAGAGTCTTGC 1 chr5:38016117-38016217 ( 62) TTTTTTTTTTTTTTTTGAGACAGAGTCTTGC 1 chr8:31763940-31764023 ( 51) TTTTTTTTTTTTTTTTGAGATGGAGTCTTGC 1 chr2:165832172-165832272 ( 70) TTTTTTTTTTTTTTTTGAGACAGAGTCTCAC 1 chr5:52000008-52000108 ( 69) TTTTTTTTTTTTTTTTGAGACGGAGTCTGGC 1 chr5:122083049-122083149 ( 62) TTTTTTTTTTTTTTTTGAGACGGAGTCTGGC 1 chr2:106813114-106813199 ( 1) TTTTTTTTTTTTTTTTGAGATGGAGTCTCAC 1 chr2:200286276-200286373 ( 66) TTCTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr8:3248523-3248623 ( 5) TTTTTTTTTTTTTTTTGAGACGTAGTCTCGC 1 chr2:174190854-174190954 ( 66) TTTTTTTTTTTTTTTTGAGACGAAGTCTTGC 1 chr4:101443931-101444021 ( 6) TTTTTTTTTTTTTTTTGAGACGAAGTCTTGC 1 chr1:166389433-166389533 ( 69) TCTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr3:49259697-49259785 ( 56) TTTTTTTTTTTTCTTTGAGATGGAGTCTCGC 1 chr3:133133681-133133781 ( 5) TTCTTTTTTTTTTTTTTAGACGGAGTCTCGC 1 chr8:114036840-114036940 ( 67) TTTTTTTTTTTTTTTGGAGACAGAGTCTCAC 1 chr2:94700370-94700465 ( 53) TCTTTTTTTTTTTTTTGAGACGGAGTCTCGA 1 chr4:176392215-176392315 ( 68) TTTTTTTTTTGTTGTTGAGACGGAGTCTCGC 1 chr1:67499888-67499988 ( 9) TTTTTTTCTTTTTTTTGAGATGGAGTCTCAC 1 chr5:135075278-135075362 ( 5) TTTTTTTTTTTTTTGAGAGACGGAGTCTTGC 1 chr3:8826545-8826645 ( 7) ATTTTTATTTTTTTTTGAGACGGAGTCTCAC 1 chr7:99952591-99952689 ( 60) TTTTTTTTTTTTTTTTGAGACGGAGCCTCTC 1 chr8:39781007-39781094 ( 4) TCTTTTTTTTTTTTTTGAGATGGAATCTCGC 1 chr3:130320737-130320836 ( 12) TTTGTTTTTTTTTTGTGAGATGGAGTCTTGC 1 chr3:65244861-65244961 ( 3) TTTCTTTTTTTTTTTTGAGACGGAGTCTCAT 1 chr3:26475665-26475765 ( 1) TTTTTTTTTTTTTTTTGAGACGGAGACTCAG 1 chr8:26211657-26211757 ( 60) TTTTTATTTTATTTTTGAGACAGAGTCTGGC 1 chr5:181174897-181174997 ( 7) TATTTATTTATTTTTTGAGACGGAGTCTCGC 1 chr2:198074546-198074646 ( 68) TTTGTTGTTTGTTTTTGAGACGGAGTCTCGC 1 chr6:156636265-156636365 ( 9) GTTTGTTTTTTTTTTTGAAACGGAGTCTCGC 1 chr4:36155647-36155747 ( 4) TTTTTAATTTTTTTTTTAGACCGAGTCTCGC 1 chr1:105325047-105325147 ( 60) TTTTTTTTTTTTTTAATAGAGGGAGTCTCGC 1 chr5:98636476-98636576 ( 64) ATTTTATTTTATTTTTGAGATGGAGTCACGC 1 chr4:122956623-122956720 ( 10) TGTATTTATTTATTTTGAGATGGAGTCTTGC 1 chr6:157504208-157504308 ( 53) TTTTTTTTTTTTAGTAGAGACGGGGTTTTAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 11.6165 E= 6.3e-541 -251 -1229 -377 205 -350 -218 -377 198 -1229 -277 -1229 208 -350 -377 -277 202 -1229 -1229 -377 211 -151 -1229 -1229 202 -251 -1229 -377 205 -350 -377 -1229 208 -1229 -1229 -1229 214 -350 -1229 -1229 211 -251 -1229 -277 202 -350 -1229 -1229 211 -350 -377 -1229 208 -1229 -1229 -277 208 -350 -1229 -277 205 -192 -1229 -377 202 -1229 -1229 179 -192 214 -1229 -1229 -1229 -350 -1229 185 -1229 214 -1229 -1229 -1229 -1229 159 -377 -51 -19 -377 152 -1229 -251 -1229 179 -350 211 -1229 -377 -1229 -350 -1229 185 -1229 -350 -377 -1229 208 -1229 185 -1229 -350 -350 -1229 -1229 211 -1229 136 -218 8 -34 -1229 155 -350 -350 179 -377 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 6.3e-541 0.040000 0.000000 0.020000 0.940000 0.020000 0.060000 0.020000 0.900000 0.000000 0.040000 0.000000 0.960000 0.020000 0.020000 0.040000 0.920000 0.000000 0.000000 0.020000 0.980000 0.080000 0.000000 0.000000 0.920000 0.040000 0.000000 0.020000 0.940000 0.020000 0.020000 0.000000 0.960000 0.000000 0.000000 0.000000 1.000000 0.020000 0.000000 0.000000 0.980000 0.040000 0.000000 0.040000 0.920000 0.020000 0.000000 0.000000 0.980000 0.020000 0.020000 0.000000 0.960000 0.000000 0.000000 0.040000 0.960000 0.020000 0.000000 0.040000 0.940000 0.060000 0.000000 0.020000 0.920000 0.000000 0.000000 0.940000 0.060000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.820000 0.020000 0.160000 0.200000 0.020000 0.780000 0.000000 0.040000 0.000000 0.940000 0.020000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.020000 0.000000 0.960000 0.000000 0.980000 0.000000 0.020000 0.020000 0.000000 0.000000 0.980000 0.000000 0.700000 0.060000 0.240000 0.180000 0.000000 0.800000 0.020000 0.020000 0.940000 0.020000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC MEME-5 regular expression -------------------------------------------------------------------------------- TTTTTTTTTTTTTTTTGAGAC[GA]GAGTCT[CT]GC -------------------------------------------------------------------------------- Time 4682.85 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCCTCAGCCTCCCGAGTAGCT MEME-6 width = 23 sites = 50 llr = 1441 E-value = 1.0e-384 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::::::a:::::::2a::a::: pos.-specific C a::aa:a::aa:aa71:::::a: probability G ::a:::::a::::::7:a::a:: matrix T :a:::a:::::a::2:::a:::a bits 2.1 * ** 1.9 **** *** *** * ***** 1.7 ************** ******* 1.5 ************** ******* Relative 1.3 ************** ******* Entropy 1.1 ************** ******* (41.6 bits) 0.9 *********************** 0.6 *********************** 0.4 *********************** 0.2 *********************** 0.0 ----------------------- Multilevel CTGCCTCAGCCTCCCGAGTAGCT consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chr3:65784435-65784535 - 56 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:93104874-93104974 - 62 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr7:67759204-67759304 + 21 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gggactacag chr5:78081300-78081400 + 21 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gggactacag chr6:124482852-124482952 - 65 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr2:241258116-241258216 - 37 2.46e-14 CGCCATTCGC CTGCCTCAGCCTCCCGAGTAGCT GGGATTACAG chr4:5468780-5468880 - 62 2.46e-14 CACCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr3:128659451-128659551 - 63 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr3:149675715-149675815 + 19 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gagactacag chr5:60656159-60656259 + 18 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gagactacag chr3:48873697-48873797 - 59 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:186418278-186418378 + 70 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gggactac chr7:111684260-111684360 + 24 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gggactacag chr3:58460762-58460862 - 59 2.46e-14 CACCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr6:142338013-142338113 + 21 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gcgactacag chr4:163679613-163679713 + 17 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct gggactacgg chr8:123421676-123421776 + 22 2.46e-14 caccattctc ctgcctcagcctcccgagtagct ggggctgcag chr3:177233677-177233777 + 73 2.46e-14 cgccattctc ctgcctcagcctcccgagtagct ggcat chr3:2121899-2121999 - 56 2.46e-14 CGCCATTCTC CTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:213313682-213313782 - 58 4.50e-14 CGCCATTCTC CTGCCTCAGCCTCCCAAGTAGCT GGGACTACAC chr3:171913148-171913248 + 24 4.50e-14 cgccattctc ctgcctcagcctcccaagtagct gggagtacag chr1:11008673-11008773 - 57 4.50e-14 CGCCATTCTC CTGCCTCAGCCTCCCAAGTAGCT GGGACTACAG chr8:51814587-51814687 - 12 4.50e-14 CGCCATTCTC CTGCCTCAGCCTCCCAAGTAGCT GGGACTACAG chr1:121530711-121530811 + 15 6.55e-14 cgccattctc ctgcctcagcctcctgagtagct gggactacag chr2:133268479-133268579 + 19 6.55e-14 cgccattctc ctgcctcagcctcctgagtagct gggactacag chr6:27190816-27190916 - 52 6.55e-14 CGCCATTCCC CTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr2:41313482-41313582 + 24 6.55e-14 cgccattctc ctgcctcagcctcctgagtagct gggactacag chr1:44794228-44794328 - 63 6.55e-14 CGCCATTCTC CTGCCTCAGCCTCCTGAGTAGCT GGGACTACAA chr6:102192570-102192670 - 61 6.55e-14 TGCCATTCTC CTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr1:199979482-199979582 + 13 6.55e-14 cgccattctt ctgcctcagcctcctgagtagct aggactacag chr2:23572696-23572796 + 20 6.55e-14 caccattctt ctgcctcagcctcctgagtagct gggactacag chr7:87994832-87994932 + 17 8.25e-14 cgccatcctc ctgcctcagcctcctaagtagct gggaatacag chr1:101896488-101896588 + 32 1.07e-13 cgccattctc ctgcctcagcctccccagtagct gggactacag chr1:35118443-35118543 - 63 1.07e-13 CGCCATTCTC CTGCCTCAGCCTCCCCAGTAGCT GGGACTACAG chr3:170347183-170347283 + 16 1.07e-13 accgattctc ctgcctcagcctccccagtagct gggactacag chr1:24423373-24423473 - 64 1.07e-13 CGCCATTCTC CTGCCTCAGCCTCCCCAGTAGCT GGGACTATAG chr5:79153114-79153214 + 16 1.32e-13 cgccattctc ctgcctcagcctccggagtagct gggactagaa chr3:189312220-189312320 + 77 1.32e-13 catcattctc ctgcctcagcctccggagtagct g chr1:228330928-228331028 + 21 1.73e-13 cgccattctc ctgcctcagcctccagagtagct gggattacag chr1:144924458-144924558 - 61 2.95e-13 CGCCATTCTC CTGCCTCAGCCTCCCGAATAGCT GGGACTACAG chr6:115329586-115329686 + 25 2.95e-13 cgccattctc ctgcctcagactcccgagtagct gggactacag chr4:14637971-14638071 + 14 4.58e-13 cgccattctc ccgcctcagcctcccgagtagct gggactacag chr7:137149714-137149814 + 19 4.58e-13 cgccattctc ctgcctcagcctcccgagtagcc gggactacag chr2:121950364-121950464 + 25 5.77e-13 cgccattctc ctgcctcagcttcccaagtagct gggactacag chr3:166536408-166536508 - 56 5.77e-13 CGCCATTCTC CTGCTTCAGCCTCCCAAGTAGCT GGGACTACAG chr1:166668263-166668363 + 24 5.77e-13 cgccattctc ctgcctcagcctcccaattagct gggactacag chr8:94544390-94544490 - 56 5.77e-13 CGCCATTCTC CTGCCTCAACCTCCCAAGTAGCT GGGACTACAG chr3:129784296-129784396 - 64 7.00e-13 AGCCATTCTC CTGCCACAGCCTCCCAAGTAGCT GGAACTACAG chr7:117328434-117328534 - 61 8.43e-13 TGCCATTCTC CTGCCTCAGCCCCCCAAGTAGCT GGGACTACAG chr1:247030741-247030841 - 60 9.42e-13 TGCCATTCTC CTGCCTCAGCCTCCTGCGTAGCT GGGACTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3:65784435-65784535 2.5e-14 55_[-6]_22 chr1:93104874-93104974 2.5e-14 61_[-6]_16 chr7:67759204-67759304 2.5e-14 20_[+6]_57 chr5:78081300-78081400 2.5e-14 20_[+6]_57 chr6:124482852-124482952 2.5e-14 64_[-6]_13 chr2:241258116-241258216 2.5e-14 36_[-6]_41 chr4:5468780-5468880 2.5e-14 61_[-6]_16 chr3:128659451-128659551 2.5e-14 62_[-6]_15 chr3:149675715-149675815 2.5e-14 18_[+6]_59 chr5:60656159-60656259 2.5e-14 17_[+6]_60 chr3:48873697-48873797 2.5e-14 58_[-6]_19 chr1:186418278-186418378 2.5e-14 69_[+6]_8 chr7:111684260-111684360 2.5e-14 23_[+6]_54 chr3:58460762-58460862 2.5e-14 58_[-6]_19 chr6:142338013-142338113 2.5e-14 20_[+6]_57 chr4:163679613-163679713 2.5e-14 16_[+6]_61 chr8:123421676-123421776 2.5e-14 21_[+6]_56 chr3:177233677-177233777 2.5e-14 72_[+6]_5 chr3:2121899-2121999 2.5e-14 55_[-6]_22 chr1:213313682-213313782 4.5e-14 57_[-6]_20 chr3:171913148-171913248 4.5e-14 23_[+6]_54 chr1:11008673-11008773 4.5e-14 56_[-6]_21 chr8:51814587-51814687 4.5e-14 11_[-6]_66 chr1:121530711-121530811 6.5e-14 14_[+6]_63 chr2:133268479-133268579 6.5e-14 18_[+6]_59 chr6:27190816-27190916 6.5e-14 51_[-6]_26 chr2:41313482-41313582 6.5e-14 23_[+6]_54 chr1:44794228-44794328 6.5e-14 62_[-6]_15 chr6:102192570-102192670 6.5e-14 60_[-6]_17 chr1:199979482-199979582 6.5e-14 12_[+6]_65 chr2:23572696-23572796 6.5e-14 19_[+6]_58 chr7:87994832-87994932 8.2e-14 16_[+6]_61 chr1:101896488-101896588 1.1e-13 31_[+6]_46 chr1:35118443-35118543 1.1e-13 62_[-6]_15 chr3:170347183-170347283 1.1e-13 15_[+6]_62 chr1:24423373-24423473 1.1e-13 63_[-6]_14 chr5:79153114-79153214 1.3e-13 15_[+6]_62 chr3:189312220-189312320 1.3e-13 76_[+6]_1 chr1:228330928-228331028 1.7e-13 20_[+6]_57 chr1:144924458-144924558 3e-13 60_[-6]_17 chr6:115329586-115329686 3e-13 24_[+6]_53 chr4:14637971-14638071 4.6e-13 13_[+6]_64 chr7:137149714-137149814 4.6e-13 18_[+6]_59 chr2:121950364-121950464 5.8e-13 24_[+6]_53 chr3:166536408-166536508 5.8e-13 55_[-6]_22 chr1:166668263-166668363 5.8e-13 23_[+6]_54 chr8:94544390-94544490 5.8e-13 55_[-6]_22 chr3:129784296-129784396 7e-13 63_[-6]_14 chr7:117328434-117328534 8.4e-13 60_[-6]_17 chr1:247030741-247030841 9.4e-13 59_[-6]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCCTCAGCCTCCCGAGTAGCT width=23 seqs=50 chr3:65784435-65784535 ( 56) CTGCCTCAGCCTCCCGAGTAGCT 1 chr1:93104874-93104974 ( 62) CTGCCTCAGCCTCCCGAGTAGCT 1 chr7:67759204-67759304 ( 21) CTGCCTCAGCCTCCCGAGTAGCT 1 chr5:78081300-78081400 ( 21) CTGCCTCAGCCTCCCGAGTAGCT 1 chr6:124482852-124482952 ( 65) CTGCCTCAGCCTCCCGAGTAGCT 1 chr2:241258116-241258216 ( 37) CTGCCTCAGCCTCCCGAGTAGCT 1 chr4:5468780-5468880 ( 62) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:128659451-128659551 ( 63) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:149675715-149675815 ( 19) CTGCCTCAGCCTCCCGAGTAGCT 1 chr5:60656159-60656259 ( 18) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:48873697-48873797 ( 59) CTGCCTCAGCCTCCCGAGTAGCT 1 chr1:186418278-186418378 ( 70) CTGCCTCAGCCTCCCGAGTAGCT 1 chr7:111684260-111684360 ( 24) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:58460762-58460862 ( 59) CTGCCTCAGCCTCCCGAGTAGCT 1 chr6:142338013-142338113 ( 21) CTGCCTCAGCCTCCCGAGTAGCT 1 chr4:163679613-163679713 ( 17) CTGCCTCAGCCTCCCGAGTAGCT 1 chr8:123421676-123421776 ( 22) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:177233677-177233777 ( 73) CTGCCTCAGCCTCCCGAGTAGCT 1 chr3:2121899-2121999 ( 56) CTGCCTCAGCCTCCCGAGTAGCT 1 chr1:213313682-213313782 ( 58) CTGCCTCAGCCTCCCAAGTAGCT 1 chr3:171913148-171913248 ( 24) CTGCCTCAGCCTCCCAAGTAGCT 1 chr1:11008673-11008773 ( 57) CTGCCTCAGCCTCCCAAGTAGCT 1 chr8:51814587-51814687 ( 12) CTGCCTCAGCCTCCCAAGTAGCT 1 chr1:121530711-121530811 ( 15) CTGCCTCAGCCTCCTGAGTAGCT 1 chr2:133268479-133268579 ( 19) CTGCCTCAGCCTCCTGAGTAGCT 1 chr6:27190816-27190916 ( 52) CTGCCTCAGCCTCCTGAGTAGCT 1 chr2:41313482-41313582 ( 24) CTGCCTCAGCCTCCTGAGTAGCT 1 chr1:44794228-44794328 ( 63) CTGCCTCAGCCTCCTGAGTAGCT 1 chr6:102192570-102192670 ( 61) CTGCCTCAGCCTCCTGAGTAGCT 1 chr1:199979482-199979582 ( 13) CTGCCTCAGCCTCCTGAGTAGCT 1 chr2:23572696-23572796 ( 20) CTGCCTCAGCCTCCTGAGTAGCT 1 chr7:87994832-87994932 ( 17) CTGCCTCAGCCTCCTAAGTAGCT 1 chr1:101896488-101896588 ( 32) CTGCCTCAGCCTCCCCAGTAGCT 1 chr1:35118443-35118543 ( 63) CTGCCTCAGCCTCCCCAGTAGCT 1 chr3:170347183-170347283 ( 16) CTGCCTCAGCCTCCCCAGTAGCT 1 chr1:24423373-24423473 ( 64) CTGCCTCAGCCTCCCCAGTAGCT 1 chr5:79153114-79153214 ( 16) CTGCCTCAGCCTCCGGAGTAGCT 1 chr3:189312220-189312320 ( 77) CTGCCTCAGCCTCCGGAGTAGCT 1 chr1:228330928-228331028 ( 21) CTGCCTCAGCCTCCAGAGTAGCT 1 chr1:144924458-144924558 ( 61) CTGCCTCAGCCTCCCGAATAGCT 1 chr6:115329586-115329686 ( 25) CTGCCTCAGACTCCCGAGTAGCT 1 chr4:14637971-14638071 ( 14) CCGCCTCAGCCTCCCGAGTAGCT 1 chr7:137149714-137149814 ( 19) CTGCCTCAGCCTCCCGAGTAGCC 1 chr2:121950364-121950464 ( 25) CTGCCTCAGCTTCCCAAGTAGCT 1 chr3:166536408-166536508 ( 56) CTGCTTCAGCCTCCCAAGTAGCT 1 chr1:166668263-166668363 ( 24) CTGCCTCAGCCTCCCAATTAGCT 1 chr8:94544390-94544490 ( 56) CTGCCTCAACCTCCCAAGTAGCT 1 chr3:129784296-129784396 ( 64) CTGCCACAGCCTCCCAAGTAGCT 1 chr7:117328434-117328534 ( 61) CTGCCTCAGCCCCCCAAGTAGCT 1 chr1:247030741-247030841 ( 60) CTGCCTCAGCCTCCTGCGTAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 46259 bayes= 9.85203 E= 1.0e-384 -1229 187 -1229 -1229 -1229 -377 -1229 211 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 185 -1229 -350 -350 -1229 -1229 211 -1229 187 -1229 -1229 214 -1229 -1229 -1229 -350 -1229 185 -1229 -350 185 -1229 -1229 -1229 185 -1229 -350 -1229 -377 -1229 211 -1229 187 -1229 -1229 -1229 187 -1229 -1229 -350 144 -277 -19 -5 -177 136 -1229 211 -377 -1229 -1229 -350 -1229 182 -350 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 -377 -1229 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 50 E= 1.0e-384 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.020000 0.000000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.980000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.020000 0.740000 0.040000 0.200000 0.220000 0.080000 0.700000 0.000000 0.980000 0.020000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCCTCAGCCTCCCGAGTAGCT MEME-6 regular expression -------------------------------------------------------------------------------- CTGCCTCAGCCTCC[CT][GA]AGTAGCT -------------------------------------------------------------------------------- Time 5543.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 width = 27 sites = 50 llr = 1592 E-value = 3.3e-442 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 Description -------------------------------------------------------------------------------- Simplified A :a1::::a:::9:::3::a::::1a:: pos.-specific C ::::aa9::a::9:9::::::a::::: probability G ::9:::::a::1:1:6aa:aa::9:aa matrix T a::a::::::a:191:::::::a:::: bits 2.1 * * * * * 1.9 ** * * * * ** * * 1.7 ** *** **** ******* *** 1.5 ** *********** ******* *** Relative 1.3 ************** *********** Entropy 1.1 *************** *********** (45.9 bits) 0.9 *************************** 0.6 *************************** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel TAGTCCCAGCTACTCGGGAGGCTGAGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr7:1075608-1075708 - 23 9.44e-17 CGGGCACCTG TAGTCCCAGCTACTCGGGAGGCTGAGG CCGGACAATG chr2:215200854-215200954 + 48 9.44e-17 tgggcgcctg tagtcccagctactcgggaggctgagg caggagaatg chr2:197598946-197599046 - 23 9.44e-17 TGGGTGCCTG TAGTCCCAGCTACTCGGGAGGCTGAGG TAGGAAAATG chr6:19422381-19422481 + 38 9.44e-17 cgggcgcctg tagtcccagctactcgggaggctgagg caggagaatg chr1:25977014-25977114 - 31 9.44e-17 CGGGCGCCTG TAGTCCCAGCTACTCGGGAGGCTGAGG CAGGAGAATG chr8:66706201-66706301 - 24 9.44e-17 CAGGCGCCTG TAGTCCCAGCTACTCGGGAGGCTGAGG CAGGAGAATG chr4:56070301-56070401 - 20 9.44e-17 CGGGCGCCTG TAGTCCCAGCTACTCGGGAGGCTGAGG CAGAAGAATG chr5:168367322-168367422 - 25 9.44e-17 CGGGCGCCTG TAGTCCCAGCTACTCGGGAGGCTGAGG CAGGAGAATG chr7:75783518-75783618 + 51 9.44e-17 caggcgcctg tagtcccagctactcgggaggctgagg caggagaatg chr3:72703566-72703666 + 49 9.44e-17 cgggtgcctg tagtcccagctactcgggaggctgagg caggagaatg chr5:97008662-97008762 - 22 1.73e-16 CAGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr2:24931610-24931710 - 25 1.73e-16 TGGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr4:137001677-137001777 - 17 1.73e-16 TGGGTGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr1:151111411-151111511 - 25 1.73e-16 CAGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr3:57001915-57002015 - 25 1.73e-16 TGGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr1:23788373-23788473 + 52 1.73e-16 cgggagcctg tagtcccagctactcaggaggctgagg caggagaatg chr6:6404699-6404799 - 25 1.73e-16 TGGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGCAGAATG chr2:48231432-48231532 + 49 1.73e-16 caggcgcctg tagtcccagctactcaggaggctgagg caggagaacg chr7:72032052-72032152 - 24 1.73e-16 TGGGCGCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATG chr3:9958782-9958882 - 66 1.73e-16 GCCTCCTG TAGTCCCAGCTACTCAGGAGGCTGAGG CAGGAGAATT chr1:16185573-16185673 - 22 3.30e-16 CGGGCGCCTG TAGTCCCAGCTACTTGGGAGGCTGAGG CAGGAAAATG chr1:42532756-42532856 - 23 3.30e-16 CGGGCGCCTG TAGTCCCAGCTACTTGGGAGGCTGAGG CAGGAGAATG chr2:135347289-135347389 - 21 5.22e-16 TGGGCGCCTG TAGTCCCAGCTGCTCGGGAGGCTGAGG CAAGAGAATG chr3:13307603-13307703 + 50 8.91e-16 tgggcacctg tagtcccagctactcaggaggctaagg gaggagaatg chr6:32652010-32652110 + 58 1.32e-15 cgggtgcctg tagtcccagctactcgggagactgagg caggagaaag chr4:90423821-90423921 + 54 1.32e-15 cgggcgcctg tagtaccagctactcgggaggctgagg caggagaatg chr4:187797263-187797363 - 21 2.15e-15 GCGGCGCCTG TAGTCCCAGCTACTCAGGAGGTTGAGG CAGGAGAATG chr4:25618023-25618123 + 44 3.18e-15 cgggcgcctg tagtcctagctactcgggaggctgagg caggagaatg chr1:88664286-88664386 - 20 3.55e-15 CGGCCGCCTG TAGTCCCAGCTACTCAGGAGGCGGAGG CAGGAGAATG chr3:28535167-28535267 + 47 3.73e-15 caggcgcctg tagtcccagctacccgggaggctgagg caggagaatg chr2:151626539-151626639 - 35 4.95e-15 CAGACGCCTG TAGTCCCAGCTACTCAAGAGGCTGAGG CAGGAGAATG chr7:2501219-2501319 + 42 6.00e-15 caggcgcctg tagtcccagctgttcgggaggctgagg caggagaatg chr2:102310176-102310276 - 40 9.47e-15 TGCACACCTC TAATCCAAGCTACTCAGGAGGCTGAGG CACGAGAATT chr6:29456241-29456341 + 57 1.06e-14 cgggcgcctg tagtcccagctattcgggaggttgagg caggagaatg chr7:28949334-28949434 + 57 1.06e-14 cgggcgcctg tggtcccagctgctcgggaggctgagg cgggagaatg chr5:3098303-3098403 + 50 1.27e-14 cgggcgcctg tagtcccagctacttgggaggctgaag caggatgaca chr1:30752819-30752919 - 20 1.57e-14 CGGGAGCCTG TAGTCCAAGCTACGCGGGAGGCTGAGG CAGGAGAATT chr7:138357567-138357667 - 19 1.81e-14 CGGGGGCCTG TAGTCCCACCTACGCGGGAGGCTGAGG CAGGAGAACT chr4:2985130-2985230 + 56 2.00e-14 cgggtgtgtg taatcccagctgcttgggaggctgagg caggagaatg chr4:87010805-87010905 + 51 2.17e-14 cgggcgcctg tagtcccagctacgcgggaggcggagg caggagaatg chr1:45664050-45664150 + 59 3.15e-14 caagcgcctg tagtaccagctactcgggaggctgagt caggagaatg chr2:241076809-241076909 + 55 3.56e-14 cgggcgcctg tggtcccagctactccggaggctgagg caggagaatg chr3:136376788-136376888 - 22 3.74e-14 CAGGCGCCTG TAATCCCAGCTACTTGGGAGACTGAGG CAGGAGAATC chr2:107936128-107936228 + 49 5.39e-14 caggcgcctg tagtcccagatactcgggaagctgagg caggaagatt chr4:52987028-52987128 - 21 5.72e-14 CCGGCACCTG TAGTCCCAGCTGTTCAGGAGGCTAAGG CAGGAGAATG chr8:38249105-38249205 - 23 7.51e-14 CAGTCACCTG TATTCCCAGCTACACAGGAGGCTGAGG CAGGAGAATG chr1:171760649-171760749 - 20 8.60e-14 CGGGCGCCTG TAGTCCCAGCTGCTGGGGAGGCTAAGG CAGGAGAATG chr8:31082602-31082702 - 48 2.55e-13 CGGGCACCTG TAATCCCAGTGACTCGGGAGGCTGAGG TAGGAGAATC chr1:35712449-35712549 + 54 4.04e-13 cgggcgcctg tagtcccacctactcgtgaggcttagg caggagaatg chr7:22656191-22656291 - 27 6.99e-13 TGTGTGCCTG TAATCCCAGCTACTAGGGAGGCTAAGA CAGGAGAATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr7:1075608-1075708 9.4e-17 22_[-7]_51 chr2:215200854-215200954 9.4e-17 47_[+7]_26 chr2:197598946-197599046 9.4e-17 22_[-7]_51 chr6:19422381-19422481 9.4e-17 37_[+7]_36 chr1:25977014-25977114 9.4e-17 30_[-7]_43 chr8:66706201-66706301 9.4e-17 23_[-7]_50 chr4:56070301-56070401 9.4e-17 19_[-7]_54 chr5:168367322-168367422 9.4e-17 24_[-7]_49 chr7:75783518-75783618 9.4e-17 50_[+7]_23 chr3:72703566-72703666 9.4e-17 48_[+7]_25 chr5:97008662-97008762 1.7e-16 21_[-7]_52 chr2:24931610-24931710 1.7e-16 24_[-7]_49 chr4:137001677-137001777 1.7e-16 16_[-7]_57 chr1:151111411-151111511 1.7e-16 24_[-7]_49 chr3:57001915-57002015 1.7e-16 24_[-7]_49 chr1:23788373-23788473 1.7e-16 51_[+7]_22 chr6:6404699-6404799 1.7e-16 24_[-7]_49 chr2:48231432-48231532 1.7e-16 48_[+7]_25 chr7:72032052-72032152 1.7e-16 23_[-7]_50 chr3:9958782-9958882 1.7e-16 65_[-7]_8 chr1:16185573-16185673 3.3e-16 21_[-7]_52 chr1:42532756-42532856 3.3e-16 22_[-7]_51 chr2:135347289-135347389 5.2e-16 20_[-7]_53 chr3:13307603-13307703 8.9e-16 49_[+7]_24 chr6:32652010-32652110 1.3e-15 57_[+7]_16 chr4:90423821-90423921 1.3e-15 53_[+7]_20 chr4:187797263-187797363 2.2e-15 20_[-7]_53 chr4:25618023-25618123 3.2e-15 43_[+7]_30 chr1:88664286-88664386 3.6e-15 19_[-7]_54 chr3:28535167-28535267 3.7e-15 46_[+7]_27 chr2:151626539-151626639 4.9e-15 34_[-7]_39 chr7:2501219-2501319 6e-15 41_[+7]_32 chr2:102310176-102310276 9.5e-15 39_[-7]_34 chr6:29456241-29456341 1.1e-14 56_[+7]_17 chr7:28949334-28949434 1.1e-14 56_[+7]_17 chr5:3098303-3098403 1.3e-14 49_[+7]_24 chr1:30752819-30752919 1.6e-14 19_[-7]_54 chr7:138357567-138357667 1.8e-14 18_[-7]_55 chr4:2985130-2985230 2e-14 55_[+7]_18 chr4:87010805-87010905 2.2e-14 50_[+7]_23 chr1:45664050-45664150 3.1e-14 58_[+7]_15 chr2:241076809-241076909 3.6e-14 54_[+7]_19 chr3:136376788-136376888 3.7e-14 21_[-7]_52 chr2:107936128-107936228 5.4e-14 48_[+7]_25 chr4:52987028-52987128 5.7e-14 20_[-7]_53 chr8:38249105-38249205 7.5e-14 22_[-7]_51 chr1:171760649-171760749 8.6e-14 19_[-7]_54 chr8:31082602-31082702 2.5e-13 47_[-7]_26 chr1:35712449-35712549 4e-13 53_[+7]_20 chr7:22656191-22656291 7e-13 26_[-7]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGTCCCAGCTACTCRGGAGGCTGAGG width=27 seqs=50 chr7:1075608-1075708 ( 23) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr2:215200854-215200954 ( 48) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr2:197598946-197599046 ( 23) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr6:19422381-19422481 ( 38) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr1:25977014-25977114 ( 31) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr8:66706201-66706301 ( 24) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr4:56070301-56070401 ( 20) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr5:168367322-168367422 ( 25) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr7:75783518-75783618 ( 51) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr3:72703566-72703666 ( 49) TAGTCCCAGCTACTCGGGAGGCTGAGG 1 chr5:97008662-97008762 ( 22) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr2:24931610-24931710 ( 25) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr4:137001677-137001777 ( 17) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr1:151111411-151111511 ( 25) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr3:57001915-57002015 ( 25) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr1:23788373-23788473 ( 52) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr6:6404699-6404799 ( 25) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr2:48231432-48231532 ( 49) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr7:72032052-72032152 ( 24) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr3:9958782-9958882 ( 66) TAGTCCCAGCTACTCAGGAGGCTGAGG 1 chr1:16185573-16185673 ( 22) TAGTCCCAGCTACTTGGGAGGCTGAGG 1 chr1:42532756-42532856 ( 23) TAGTCCCAGCTACTTGGGAGGCTGAGG 1 chr2:135347289-135347389 ( 21) TAGTCCCAGCTGCTCGGGAGGCTGAGG 1 chr3:13307603-13307703 ( 50) TAGTCCCAGCTACTCAGGAGGCTAAGG 1 chr6:32652010-32652110 ( 58) TAGTCCCAGCTACTCGGGAGACTGAGG 1 chr4:90423821-90423921 ( 54) TAGTACCAGCTACTCGGGAGGCTGAGG 1 chr4:187797263-187797363 ( 21) TAGTCCCAGCTACTCAGGAGGTTGAGG 1 chr4:25618023-25618123 ( 44) TAGTCCTAGCTACTCGGGAGGCTGAGG 1 chr1:88664286-88664386 ( 20) TAGTCCCAGCTACTCAGGAGGCGGAGG 1 chr3:28535167-28535267 ( 47) TAGTCCCAGCTACCCGGGAGGCTGAGG 1 chr2:151626539-151626639 ( 35) TAGTCCCAGCTACTCAAGAGGCTGAGG 1 chr7:2501219-2501319 ( 42) TAGTCCCAGCTGTTCGGGAGGCTGAGG 1 chr2:102310176-102310276 ( 40) TAATCCAAGCTACTCAGGAGGCTGAGG 1 chr6:29456241-29456341 ( 57) TAGTCCCAGCTATTCGGGAGGTTGAGG 1 chr7:28949334-28949434 ( 57) TGGTCCCAGCTGCTCGGGAGGCTGAGG 1 chr5:3098303-3098403 ( 50) TAGTCCCAGCTACTTGGGAGGCTGAAG 1 chr1:30752819-30752919 ( 20) TAGTCCAAGCTACGCGGGAGGCTGAGG 1 chr7:138357567-138357667 ( 19) TAGTCCCACCTACGCGGGAGGCTGAGG 1 chr4:2985130-2985230 ( 56) TAATCCCAGCTGCTTGGGAGGCTGAGG 1 chr4:87010805-87010905 ( 51) TAGTCCCAGCTACGCGGGAGGCGGAGG 1 chr1:45664050-45664150 ( 59) TAGTACCAGCTACTCGGGAGGCTGAGT 1 chr2:241076809-241076909 ( 55) TGGTCCCAGCTACTCCGGAGGCTGAGG 1 chr3:136376788-136376888 ( 22) TAATCCCAGCTACTTGGGAGACTGAGG 1 chr2:107936128-107936228 ( 49) TAGTCCCAGATACTCGGGAAGCTGAGG 1 chr4:52987028-52987128 ( 21) TAGTCCCAGCTGTTCAGGAGGCTAAGG 1 chr8:38249105-38249205 ( 23) TATTCCCAGCTACACAGGAGGCTGAGG 1 chr1:171760649-171760749 ( 20) TAGTCCCAGCTGCTGGGGAGGCTAAGG 1 chr8:31082602-31082702 ( 48) TAATCCCAGTGACTCGGGAGGCTGAGG 1 chr1:35712449-35712549 ( 54) TAGTCCCACCTACTCGTGAGGCTTAGG 1 chr7:22656191-22656291 ( 27) TAATCCCAGCTACTAGGGAGGCTAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 43859 bayes= 10.9089 E= 3.3e-442 -1229 -1229 -1229 214 208 -1229 -277 -1229 -118 -1229 169 -350 -1229 -1229 -1229 214 -251 182 -1229 -1229 -1229 187 -1229 -1229 -251 179 -1229 -350 214 -1229 -1229 -1229 -1229 -277 182 -1229 -350 182 -1229 -350 -1229 -1229 -377 211 195 -1229 -118 -1229 -1229 179 -1229 -192 -350 -377 -218 198 -350 166 -377 -118 58 -377 123 -1229 -350 -1229 182 -350 -1229 -1229 187 -1229 214 -1229 -1229 -1229 -350 -1229 185 -1229 -251 -1229 182 -1229 -1229 182 -1229 -251 -1229 -1229 -277 208 -151 -1229 172 -350 214 -1229 -1229 -1229 -350 -1229 185 -1229 -350 -1229 182 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 50 E= 3.3e-442 0.000000 0.000000 0.000000 1.000000 0.960000 0.000000 0.040000 0.000000 0.100000 0.000000 0.880000 0.020000 0.000000 0.000000 0.000000 1.000000 0.040000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.040000 0.940000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.000000 0.040000 0.960000 0.000000 0.020000 0.960000 0.000000 0.020000 0.000000 0.000000 0.020000 0.980000 0.880000 0.000000 0.120000 0.000000 0.000000 0.940000 0.000000 0.060000 0.020000 0.020000 0.060000 0.900000 0.020000 0.860000 0.020000 0.100000 0.340000 0.020000 0.640000 0.000000 0.020000 0.000000 0.960000 0.020000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.040000 0.000000 0.960000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.040000 0.960000 0.080000 0.000000 0.900000 0.020000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.960000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCCAGCTACTCRGGAGGCTGAGG MEME-7 regular expression -------------------------------------------------------------------------------- TAGTCCCAGCTACTC[GA]GGAGGCTGAGG -------------------------------------------------------------------------------- Time 6361.39 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 width = 31 sites = 50 llr = 1980 E-value = 4.2e-601 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 Description -------------------------------------------------------------------------------- Simplified A ::a::::::::::::a::::::1:a::a::: pos.-specific C aa:::a:aa1:aa:a::aa:aa6::::::a: probability G ::::::::::a:::::a:::::19:a::a:: matrix T :::aa:a::9:::a:::::a::3:::a:::a bits 2.1 * * * * * * 1.9 * *** ** ****** * * * ***** 1.7 ********************** ******* 1.5 ********************** ******* Relative 1.3 ********************** ******** Entropy 1.1 ********************** ******** (57.1 bits) 0.9 ********************** ******** 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr2:104339521-104339621 + 8 3.63e-19 gttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr6:108096365-108096465 - 60 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr6:15688026-15688126 + 10 3.63e-19 gggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr5:83016630-83016730 + 14 3.63e-19 cgggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr8:47900579-47900679 - 64 3.63e-19 TTCATG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGGCTACAG chr3:146191742-146191842 + 13 3.63e-19 tgcgttcacg ccattctcctgcctcagcctcccgagtagct ggaactacag chr3:190576831-190576931 - 60 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr5:14822764-14822864 - 64 3.63e-19 TTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr5:7443370-7443470 - 56 3.63e-19 TGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr7:20769357-20769457 + 13 3.63e-19 cgggtttacg ccattctcctgcctcagcctcccgagtagct aggactccag chr1:24259335-24259435 - 28 3.63e-19 CAGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACCACAG chr8:20392125-20392225 + 9 3.63e-19 ggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr6:22057046-22057146 + 13 3.63e-19 tgggttcatg ccattctcctgcctcagcctcccgagtagct gggactacag chr8:20067806-20067906 - 56 3.63e-19 CGGGTTCATG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr3:96624544-96624644 + 7 3.63e-19 ttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr4:37543559-37543659 - 66 3.63e-19 CACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr5:138204622-138204722 + 9 3.63e-19 ggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr7:29068682-29068782 + 15 3.63e-19 tgggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr3:176444605-176444680 - 40 6.64e-19 TCACG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr4:167695130-167695230 - 57 6.64e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr1:76438152-76438252 + 9 6.64e-19 ggttcgcg ccattctcctgcctcagcctcctgagtagct gggactacag chr5:110021015-110021115 + 13 6.64e-19 cgagttcacg ccattctcctgcctcagcctcctgagtagct gggactacag chr4:92292947-92293047 - 47 6.64e-19 CCCATTCATG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr8:35158204-35158304 - 56 6.64e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr2:232784382-232784482 + 13 6.64e-19 caggttcatg ccattctcctgcctcagcctcctgagtagct tgggactaca chr8:9005504-9005604 + 19 6.64e-19 cgggttcacg ccattctcctgcctcagcctcctgagtagct gggactacag chr2:186959910-186960010 + 34 6.64e-19 cgggttcaag ccattctcctgcctcagcctcctgagtagct gggattacag chr8:91421031-91421131 + 5 9.66e-19 cacg ccattctcctgcctcagcctccagagtagct ggaactacag chr6:137362214-137362314 - 62 1.33e-18 GGTTCACG CCATTCTCCTGCCTCAGCCTCCGGAGTAGCT GGGACTACAG chr3:39917924-39918024 + 11 1.33e-18 caggttcacg ccattctcctgcctcagcctccggagtagct gggactacag chr2:140640378-140640478 + 19 2.07e-18 cgggttcacg ccattctcccgcctcagcctcccgagtagct gggactacag chr7:122960179-122960279 + 9 2.07e-18 ggttcacg ccattctcccgcctcagcctcccgagtagct gggactacag chr1:12651828-12651928 + 6 2.07e-18 tcacg ccattctcctgcctcagcctcccaagtagct gggactacag chr1:28454264-28454364 + 16 2.98e-18 cgggttcacg ccattctcctgcctcagcctccctagtagct gggactatag chr5:178813802-178813902 - 69 5.69e-18 G CCATTCTCCTGCCTCAGCCTCCCGAATAGCT GGGAGTACAG chr4:8659669-8659769 + 13 5.69e-18 caggttcacg ctattctcctgcctcagcctcccgagtagct gggactacag chr8:78958487-78958587 - 60 5.69e-18 TGGGTTCACG CCATTCTCCTGTCTCAGCCTCCCGAGTAGCT GGGACTACAG chr6:118594587-118594687 - 58 5.69e-18 CGGGTTCACG CCATTCTCCTGCCTCAGCCTACCGAGTAGCT GGGACTACAG chr3:47733604-47733704 - 57 5.69e-18 TGGGTTCACA CCATTCTCTTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr6:158598661-158598761 + 16 5.69e-18 cgggttcagg ccattctcctgcctcagcttcccgagtagct gggactacag chr6:159979910-159980010 - 70 6.42e-18 . CCATTCTCCTGCCACAGCCTCCCGAGTAGCT GGGACTACAG chr2:69396482-69396582 - 9 8.16e-18 CAGGTTCACG CCATCCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTAC chr3:94045680-94045780 - 57 1.07e-17 CAGGTTCACG CCATTTTCCTGCCTCAGCCTCCTGAGTAGCT GGGACCACAG chr1:36104525-36104625 - 68 1.27e-17 TG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCC GGGACTACAG chr1:38890034-38890134 + 14 1.27e-17 tgggttcacg ccattctcctgcctcagcctcctgagcagct ggaactacag chr6:75274741-75274841 - 62 1.27e-17 GGTTCATG CCGTTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr1:198977570-198977670 + 70 1.33e-17 cgggttcacg ccattctcccgcctcagcctccagagtagct chr5:138383974-138384074 - 58 1.69e-17 CAGGTTCACG CCATTCTCCTACCTCAGCCTCCAGAGTAGCT GGGACTACAG chr3:132645982-132646082 + 7 2.09e-17 ttcaca ccattctcctgcctcagcctccgcagtagct gggactacag chr1:11706931-11707031 - 62 3.07e-17 GGTTCACA CCATTCTCCTGCCTCAGCCTTCCAAGTAGCT GGGACTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:104339521-104339621 3.6e-19 7_[+8]_62 chr6:108096365-108096465 3.6e-19 59_[-8]_10 chr6:15688026-15688126 3.6e-19 9_[+8]_60 chr5:83016630-83016730 3.6e-19 13_[+8]_56 chr8:47900579-47900679 3.6e-19 63_[-8]_6 chr3:146191742-146191842 3.6e-19 12_[+8]_57 chr3:190576831-190576931 3.6e-19 59_[-8]_10 chr5:14822764-14822864 3.6e-19 63_[-8]_6 chr5:7443370-7443470 3.6e-19 55_[-8]_14 chr7:20769357-20769457 3.6e-19 12_[+8]_57 chr1:24259335-24259435 3.6e-19 27_[-8]_42 chr8:20392125-20392225 3.6e-19 8_[+8]_61 chr6:22057046-22057146 3.6e-19 12_[+8]_57 chr8:20067806-20067906 3.6e-19 55_[-8]_14 chr3:96624544-96624644 3.6e-19 6_[+8]_63 chr4:37543559-37543659 3.6e-19 65_[-8]_4 chr5:138204622-138204722 3.6e-19 8_[+8]_61 chr7:29068682-29068782 3.6e-19 14_[+8]_55 chr3:176444605-176444680 6.6e-19 39_[-8]_5 chr4:167695130-167695230 6.6e-19 56_[-8]_13 chr1:76438152-76438252 6.6e-19 8_[+8]_61 chr5:110021015-110021115 6.6e-19 12_[+8]_57 chr4:92292947-92293047 6.6e-19 46_[-8]_23 chr8:35158204-35158304 6.6e-19 55_[-8]_14 chr2:232784382-232784482 6.6e-19 12_[+8]_57 chr8:9005504-9005604 6.6e-19 18_[+8]_51 chr2:186959910-186960010 6.6e-19 33_[+8]_36 chr8:91421031-91421131 9.7e-19 4_[+8]_65 chr6:137362214-137362314 1.3e-18 61_[-8]_8 chr3:39917924-39918024 1.3e-18 10_[+8]_59 chr2:140640378-140640478 2.1e-18 18_[+8]_51 chr7:122960179-122960279 2.1e-18 8_[+8]_61 chr1:12651828-12651928 2.1e-18 5_[+8]_64 chr1:28454264-28454364 3e-18 15_[+8]_54 chr5:178813802-178813902 5.7e-18 68_[-8]_1 chr4:8659669-8659769 5.7e-18 12_[+8]_57 chr8:78958487-78958587 5.7e-18 59_[-8]_10 chr6:118594587-118594687 5.7e-18 57_[-8]_12 chr3:47733604-47733704 5.7e-18 56_[-8]_13 chr6:158598661-158598761 5.7e-18 15_[+8]_54 chr6:159979910-159980010 6.4e-18 69_[-8] chr2:69396482-69396582 8.2e-18 8_[-8]_61 chr3:94045680-94045780 1.1e-17 56_[-8]_13 chr1:36104525-36104625 1.3e-17 67_[-8]_2 chr1:38890034-38890134 1.3e-17 13_[+8]_56 chr6:75274741-75274841 1.3e-17 61_[-8]_8 chr1:198977570-198977670 1.3e-17 69_[+8] chr5:138383974-138384074 1.7e-17 57_[-8]_12 chr3:132645982-132646082 2.1e-17 6_[+8]_63 chr1:11706931-11707031 3.1e-17 61_[-8]_8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT width=31 seqs=50 chr2:104339521-104339621 ( 8) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr6:108096365-108096465 ( 60) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr6:15688026-15688126 ( 10) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:83016630-83016730 ( 14) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr8:47900579-47900679 ( 64) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:146191742-146191842 ( 13) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:190576831-190576931 ( 60) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:14822764-14822864 ( 64) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:7443370-7443470 ( 56) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr7:20769357-20769457 ( 13) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr1:24259335-24259435 ( 28) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr8:20392125-20392225 ( 9) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr6:22057046-22057146 ( 13) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr8:20067806-20067906 ( 56) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:96624544-96624644 ( 7) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr4:37543559-37543659 ( 66) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:138204622-138204722 ( 9) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr7:29068682-29068782 ( 15) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:176444605-176444680 ( 40) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr4:167695130-167695230 ( 57) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr1:76438152-76438252 ( 9) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr5:110021015-110021115 ( 13) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr4:92292947-92293047 ( 47) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr8:35158204-35158304 ( 56) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr2:232784382-232784482 ( 13) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr8:9005504-9005604 ( 19) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr2:186959910-186960010 ( 34) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr8:91421031-91421131 ( 5) CCATTCTCCTGCCTCAGCCTCCAGAGTAGCT 1 chr6:137362214-137362314 ( 62) CCATTCTCCTGCCTCAGCCTCCGGAGTAGCT 1 chr3:39917924-39918024 ( 11) CCATTCTCCTGCCTCAGCCTCCGGAGTAGCT 1 chr2:140640378-140640478 ( 19) CCATTCTCCCGCCTCAGCCTCCCGAGTAGCT 1 chr7:122960179-122960279 ( 9) CCATTCTCCCGCCTCAGCCTCCCGAGTAGCT 1 chr1:12651828-12651928 ( 6) CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr1:28454264-28454364 ( 16) CCATTCTCCTGCCTCAGCCTCCCTAGTAGCT 1 chr5:178813802-178813902 ( 69) CCATTCTCCTGCCTCAGCCTCCCGAATAGCT 1 chr4:8659669-8659769 ( 13) CTATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr8:78958487-78958587 ( 60) CCATTCTCCTGTCTCAGCCTCCCGAGTAGCT 1 chr6:118594587-118594687 ( 58) CCATTCTCCTGCCTCAGCCTACCGAGTAGCT 1 chr3:47733604-47733704 ( 57) CCATTCTCTTGCCTCAGCCTCCCGAGTAGCT 1 chr6:158598661-158598761 ( 16) CCATTCTCCTGCCTCAGCTTCCCGAGTAGCT 1 chr6:159979910-159980010 ( 70) CCATTCTCCTGCCACAGCCTCCCGAGTAGCT 1 chr2:69396482-69396582 ( 9) CCATCCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:94045680-94045780 ( 57) CCATTTTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr1:36104525-36104625 ( 68) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCC 1 chr1:38890034-38890134 ( 14) CCATTCTCCTGCCTCAGCCTCCTGAGCAGCT 1 chr6:75274741-75274841 ( 62) CCGTTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr1:198977570-198977670 ( 70) CCATTCTCCCGCCTCAGCCTCCAGAGTAGCT 1 chr5:138383974-138384074 ( 58) CCATTCTCCTACCTCAGCCTCCAGAGTAGCT 1 chr3:132645982-132646082 ( 7) CCATTCTCCTGCCTCAGCCTCCGCAGTAGCT 1 chr1:11706931-11707031 ( 62) CCATTCTCCTGCCTCAGCCTTCCAAGTAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 9.6938 E= 4.2e-601 -1229 187 -1229 -1229 -1229 185 -1229 -350 211 -1229 -377 -1229 -1229 -1229 -1229 214 -1229 -377 -1229 211 -1229 185 -1229 -350 -1229 -1229 -1229 214 -1229 187 -1229 -1229 -1229 185 -1229 -350 -1229 -218 -1229 205 -350 -1229 185 -1229 -1229 185 -1229 -350 -1229 187 -1229 -1229 -350 -1229 -1229 211 -1229 187 -1229 -1229 214 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 185 -1229 -350 -1229 -1229 -1229 214 -350 182 -1229 -350 -1229 187 -1229 -1229 -192 119 -218 19 -251 -377 175 -350 214 -1229 -1229 -1229 -350 -1229 185 -1229 -1229 -377 -1229 211 214 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 -377 -1229 211 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 4.2e-601 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.060000 0.000000 0.940000 0.020000 0.000000 0.980000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.020000 0.000000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.020000 0.960000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.060000 0.620000 0.060000 0.260000 0.040000 0.020000 0.920000 0.020000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.020000 0.000000 0.980000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-8 regular expression -------------------------------------------------------------------------------- CCATTCTCCTGCCTCAGCCTCC[CT]GAGTAGCT -------------------------------------------------------------------------------- Time 7135.46 secs. ******************************************************************************** ******************************************************************************** MOTIF CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 width = 31 sites = 50 llr = 1982 E-value = 3.1e-601 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 Description -------------------------------------------------------------------------------- Simplified A ::a::::::::::::a:::::::2a::a::: pos.-specific C aa:::a:aa::aa:a::aa:aa7::::::a: probability G ::::::::::a:::::a::::::7:a::a:: matrix T :::aa:a::a:::a:::::a::2:::a:::a bits 2.1 *** * * ** * 1.9 ***** *** **** ** * * ***** 1.7 ********************** ******* 1.5 ********************** ******* Relative 1.3 ********************** ******* Entropy 1.1 *********************** ******* (57.2 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr4:163349834-163349934 - 60 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr2:26996520-26996620 - 62 3.63e-19 GGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:64794128-64794228 - 61 3.63e-19 AGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr3:44562700-44562800 - 58 3.63e-19 CAGGTTCATG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr4:40464618-40464718 - 59 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr5:174628518-174628618 + 15 3.63e-19 cgggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr7:63188828-63188928 - 65 3.63e-19 TCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGAATACAG chr4:66323944-66324044 - 69 3.63e-19 G CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr4:171623197-171623297 + 15 3.63e-19 cgggttcacg ccattctcctgcctcagcctcccgagtagct gggactacag chr3:133008714-133008814 - 66 3.63e-19 CAAG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr5:23910327-23910427 - 55 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr3:185963527-185963627 - 63 3.63e-19 GTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGCACTACAG chr7:2370793-2370893 - 60 3.63e-19 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:89826283-89826383 + 1 3.63e-19 . ccattctcctgcctcagcctcccgagtagct gggactacag chr2:190688827-190688927 + 15 3.63e-19 cgggtttacg ccattctcctgcctcagcctcccgagtagct aggactacaa chr5:171594986-171595086 - 61 3.63e-19 GGGTTCCCA CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr4:183339070-183339170 + 8 3.63e-19 gttctcg ccattctcctgcctcagcctcccgagtagct gggactacag chr6:37032604-37032704 + 11 6.64e-19 cgggtccatg ccattctcctgcctcagcctcctgagtagct gagactacag chr6:131313566-131313666 + 15 6.64e-19 tgggttcaca ccattctcctgcctcagcctcctgagtagct gggactacag chr6:159238097-159238197 + 10 6.64e-19 gggttcacg ccattctcctgcctcagcctcctgagtagct gggactacaa chr5:33464795-33464895 - 57 6.64e-19 TGGGTTCATT CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr2:112780755-112780855 - 60 6.64e-19 TGGGTTCATG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGAATACAG chr4:147140762-147140862 - 46 6.64e-19 CAGGTTCGCG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr7:143939749-143939849 + 2 6.64e-19 g ccattctcctgcctcagcctcctgagtagct gggactacag chr5:130577783-130577883 - 55 6.64e-19 CAGGTTCACG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGACTACAG chr2:208603806-208603906 - 62 6.64e-19 AGTTCATG CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT GGGATTACAG chr7:63633087-63633187 + 6 6.64e-19 tcaca ccattctcctgcctcagcctcctgagtagct gggaccacag chr3:64774946-64775046 + 16 9.66e-19 tgggttcacg ccattctcctgcctcagcctcccaagtagct gggactacag chr4:168188287-168188387 - 69 9.66e-19 A CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT GGGACTATAC chr1:166334412-166334512 + 15 9.66e-19 cgggttcacg ccattctcctgcctcagcctcccaagtagct gggactacag chr7:2321423-2321523 + 11 9.66e-19 caggttcatg ccattctcctgcctcagcctcccaagtagct ggaataacag chr1:203897620-203897720 - 50 2.48e-18 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCTAGTAGCT GGGACTACAG chr4:99542732-99542832 - 60 2.48e-18 CGAGTTCATG CCATTCTCCTGCCTCAGCCTCCAGAGTAGCT GGGACTACAG chr6:160838502-160838602 - 47 4.90e-18 CGGGTTCACG TCATTCTCCTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr2:41941478-41941578 - 61 4.90e-18 AGGTTCACG CCATTCTCTTGCCTCAGCCTCCCGAGTAGCT GGGACTACAG chr1:216251442-216251542 + 13 4.90e-18 tgggttcaca ccattctcctgcctcagccttccgagtagct gggactacag chr2:137221030-137221130 - 49 4.90e-18 CGGGTTCAAG CCATTCTCCTGCCTCAGCCTCCCGAATAGCT GGGACTACAG chr5:20249382-20249482 + 10 4.90e-18 gggttcacg ccattctcctgcctcagactcccgagtagct gggactacac chr6:51794052-51794152 + 56 4.90e-18 cgggttcaca ccattcttctgcctcagcctcccgagtagct gggactacag chr7:129002770-129002870 - 58 5.20e-18 TGGGTTCATG CCATTCTCCTGCCTCAGCCTCCTCAGTAGCT GGGACTACAG chr5:146175557-146175657 - 58 5.81e-18 CGGGTTCACG CCATTCTCCTGCTTCAGCCTCCTGAGTAGCT GGAACTACAG chr7:88418418-88418518 + 5 8.24e-18 cacg ccattctcctgccccagcctcccgagtagct gggactacag chr3:137126198-137126298 + 14 8.24e-18 cgggttcacg ccattctcctgcctcggcctcccgagtagct gggactacag chr1:167285322-167285422 - 63 8.24e-18 GTTCACG CCATTCTCCTGCTTCAGCCTCCCAAGTAGCT GGGACTACAG chr1:121410058-121410158 + 32 1.31e-17 cggtttcact ccattctcctgcctcagtctcccaagtagct gggactacag chr4:158688407-158688507 - 59 1.31e-17 CGGGTTCACG ACATTCTCCTGCCTCAGCCTCCCAAGTAGCT GGGACTACAG chr2:32308761-32308861 - 61 1.54e-17 GGGTTCAAG CGATTCTCCTGCCTCAGCCTCCCAAGTAGCT GGGACTACAG chr5:44908345-44908445 - 62 1.72e-17 GGTTCACA CCATTCTCCCGCCTCAGCCTCCCAAGTAGCT GGGACTACAG chr2:128683794-128683894 - 49 1.72e-17 TGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCACGTAGCT GGGACTGCAG chr2:184132398-184132498 - 58 2.95e-17 CGGGTTCACG CCATTCTCCTGCCTCAGCCTCCCCGGTAGCT GGGACTACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr4:163349834-163349934 3.6e-19 59_[-9]_10 chr2:26996520-26996620 3.6e-19 61_[-9]_8 chr1:64794128-64794228 3.6e-19 60_[-9]_9 chr3:44562700-44562800 3.6e-19 57_[-9]_12 chr4:40464618-40464718 3.6e-19 58_[-9]_11 chr5:174628518-174628618 3.6e-19 14_[+9]_55 chr7:63188828-63188928 3.6e-19 64_[-9]_5 chr4:66323944-66324044 3.6e-19 68_[-9]_1 chr4:171623197-171623297 3.6e-19 14_[+9]_55 chr3:133008714-133008814 3.6e-19 65_[-9]_4 chr5:23910327-23910427 3.6e-19 54_[-9]_15 chr3:185963527-185963627 3.6e-19 62_[-9]_7 chr7:2370793-2370893 3.6e-19 59_[-9]_10 chr1:89826283-89826383 3.6e-19 [+9]_69 chr2:190688827-190688927 3.6e-19 14_[+9]_55 chr5:171594986-171595086 3.6e-19 60_[-9]_9 chr4:183339070-183339170 3.6e-19 7_[+9]_62 chr6:37032604-37032704 6.6e-19 10_[+9]_59 chr6:131313566-131313666 6.6e-19 14_[+9]_55 chr6:159238097-159238197 6.6e-19 9_[+9]_60 chr5:33464795-33464895 6.6e-19 56_[-9]_13 chr2:112780755-112780855 6.6e-19 59_[-9]_10 chr4:147140762-147140862 6.6e-19 45_[-9]_24 chr7:143939749-143939849 6.6e-19 1_[+9]_68 chr5:130577783-130577883 6.6e-19 54_[-9]_15 chr2:208603806-208603906 6.6e-19 61_[-9]_8 chr7:63633087-63633187 6.6e-19 5_[+9]_64 chr3:64774946-64775046 9.7e-19 15_[+9]_54 chr4:168188287-168188387 9.7e-19 68_[-9]_1 chr1:166334412-166334512 9.7e-19 14_[+9]_55 chr7:2321423-2321523 9.7e-19 10_[+9]_59 chr1:203897620-203897720 2.5e-18 49_[-9]_20 chr4:99542732-99542832 2.5e-18 59_[-9]_10 chr6:160838502-160838602 4.9e-18 46_[-9]_23 chr2:41941478-41941578 4.9e-18 60_[-9]_9 chr1:216251442-216251542 4.9e-18 12_[+9]_57 chr2:137221030-137221130 4.9e-18 48_[-9]_21 chr5:20249382-20249482 4.9e-18 9_[+9]_60 chr6:51794052-51794152 4.9e-18 55_[+9]_14 chr7:129002770-129002870 5.2e-18 57_[-9]_12 chr5:146175557-146175657 5.8e-18 57_[-9]_12 chr7:88418418-88418518 8.2e-18 4_[+9]_65 chr3:137126198-137126298 8.2e-18 13_[+9]_56 chr1:167285322-167285422 8.2e-18 62_[-9]_7 chr1:121410058-121410158 1.3e-17 31_[+9]_38 chr4:158688407-158688507 1.3e-17 58_[-9]_11 chr2:32308761-32308861 1.5e-17 60_[-9]_9 chr5:44908345-44908445 1.7e-17 61_[-9]_8 chr2:128683794-128683894 1.7e-17 48_[-9]_21 chr2:184132398-184132498 2.9e-17 57_[-9]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT width=31 seqs=50 chr4:163349834-163349934 ( 60) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr2:26996520-26996620 ( 62) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr1:64794128-64794228 ( 61) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:44562700-44562800 ( 58) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr4:40464618-40464718 ( 59) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:174628518-174628618 ( 15) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr7:63188828-63188928 ( 65) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr4:66323944-66324044 ( 69) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr4:171623197-171623297 ( 15) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:133008714-133008814 ( 66) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:23910327-23910427 ( 55) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr3:185963527-185963627 ( 63) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr7:2370793-2370893 ( 60) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr1:89826283-89826383 ( 1) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr2:190688827-190688927 ( 15) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr5:171594986-171595086 ( 61) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr4:183339070-183339170 ( 8) CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr6:37032604-37032704 ( 11) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr6:131313566-131313666 ( 15) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr6:159238097-159238197 ( 10) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr5:33464795-33464895 ( 57) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr2:112780755-112780855 ( 60) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr4:147140762-147140862 ( 46) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr7:143939749-143939849 ( 2) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr5:130577783-130577883 ( 55) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr2:208603806-208603906 ( 62) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr7:63633087-63633187 ( 6) CCATTCTCCTGCCTCAGCCTCCTGAGTAGCT 1 chr3:64774946-64775046 ( 16) CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr4:168188287-168188387 ( 69) CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr1:166334412-166334512 ( 15) CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr7:2321423-2321523 ( 11) CCATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr1:203897620-203897720 ( 50) CCATTCTCCTGCCTCAGCCTCCCTAGTAGCT 1 chr4:99542732-99542832 ( 60) CCATTCTCCTGCCTCAGCCTCCAGAGTAGCT 1 chr6:160838502-160838602 ( 47) TCATTCTCCTGCCTCAGCCTCCCGAGTAGCT 1 chr2:41941478-41941578 ( 61) CCATTCTCTTGCCTCAGCCTCCCGAGTAGCT 1 chr1:216251442-216251542 ( 13) CCATTCTCCTGCCTCAGCCTTCCGAGTAGCT 1 chr2:137221030-137221130 ( 49) CCATTCTCCTGCCTCAGCCTCCCGAATAGCT 1 chr5:20249382-20249482 ( 10) CCATTCTCCTGCCTCAGACTCCCGAGTAGCT 1 chr6:51794052-51794152 ( 56) CCATTCTTCTGCCTCAGCCTCCCGAGTAGCT 1 chr7:129002770-129002870 ( 58) CCATTCTCCTGCCTCAGCCTCCTCAGTAGCT 1 chr5:146175557-146175657 ( 58) CCATTCTCCTGCTTCAGCCTCCTGAGTAGCT 1 chr7:88418418-88418518 ( 5) CCATTCTCCTGCCCCAGCCTCCCGAGTAGCT 1 chr3:137126198-137126298 ( 14) CCATTCTCCTGCCTCGGCCTCCCGAGTAGCT 1 chr1:167285322-167285422 ( 63) CCATTCTCCTGCTTCAGCCTCCCAAGTAGCT 1 chr1:121410058-121410158 ( 32) CCATTCTCCTGCCTCAGTCTCCCAAGTAGCT 1 chr4:158688407-158688507 ( 59) ACATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr2:32308761-32308861 ( 61) CGATTCTCCTGCCTCAGCCTCCCAAGTAGCT 1 chr5:44908345-44908445 ( 62) CCATTCTCCCGCCTCAGCCTCCCAAGTAGCT 1 chr2:128683794-128683894 ( 49) CCATTCTCCTGCCTCAGCCTCCCACGTAGCT 1 chr2:184132398-184132498 ( 58) CCATTCTCCTGCCTCAGCCTCCCCGGTAGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 10.1844 E= 3.1e-601 -350 182 -1229 -350 -1229 185 -377 -1229 214 -1229 -1229 -1229 -1229 -1229 -1229 214 -1229 -1229 -1229 214 -1229 187 -1229 -1229 -1229 -1229 -1229 214 -1229 185 -1229 -350 -1229 185 -1229 -350 -1229 -377 -1229 211 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 182 -1229 -251 -1229 -377 -1229 211 -1229 187 -1229 -1229 211 -1229 -377 -1229 -1229 -1229 187 -1229 -350 182 -1229 -350 -1229 187 -1229 -1229 -1229 -1229 -1229 214 -1229 185 -1229 -350 -1229 187 -1229 -1229 -350 144 -1229 8 -19 -277 144 -350 208 -377 -377 -1229 -350 -1229 185 -1229 -1229 -1229 -1229 214 214 -1229 -1229 -1229 -1229 -1229 187 -1229 -1229 187 -1229 -1229 -1229 -1229 -1229 214 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 3.1e-601 0.020000 0.960000 0.000000 0.020000 0.000000 0.980000 0.020000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.020000 0.960000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.020000 0.740000 0.000000 0.240000 0.200000 0.040000 0.740000 0.020000 0.960000 0.020000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCATTCTCCTGCCTCAGCCTCCCGAGTAGCT MEME-9 regular expression -------------------------------------------------------------------------------- CCATTCTCCTGCCTCAGCCTCC[CT][GA]AGTAGCT -------------------------------------------------------------------------------- Time 7877.18 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 width = 31 sites = 50 llr = 1913 E-value = 8.3e-573 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::a1::::a:::a:::11:a:::::a:::a pos.-specific C ::::::aaa::a::a:8::::::a:::::9: probability G :a::9:::::a::::::89a:aa::a:aa:: matrix T a:a::a::::::a::91:::::::a::::1: bits 2.1 * * * * * * 1.9 **** * * * ** ** ** * * 1.7 **** *********** ******** * * 1.5 **************** *********** * Relative 1.3 **************** ************* Entropy 1.1 ***************** ************* (55.2 bits) 0.9 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:65170094-65170194 + 63 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaat chr5:65895558-65895658 + 53 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr1:16962263-16962363 + 49 3.63e-19 ggcaggcacc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr6:161897699-161897799 + 52 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr1:219510196-219510296 - 45 3.63e-19 GGCGGGCGCC TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA GGAGAATGGC chr6:132079627-132079727 + 57 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr5:169853854-169853954 - 9 3.63e-19 GGTGGGCGCC TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA GGAGAATG chr1:38484730-38484830 + 50 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr4:177525891-177525991 - 2 3.63e-19 GGTGGGCGCC TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA G chr5:2561152-2561252 + 60 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr6:100509618-100509718 + 52 3.63e-19 ggcgggcgcc tgtagtcccagctactcgggaggctgaggca ggagaatggc chr2:182532676-182532776 + 50 3.63e-19 ggtgggcgcc tgtagtcccagctactcgggaggctgaggca gaatggcgtg chr2:91491856-91491956 - 24 9.66e-19 GGCGGGCGCC TGTAGTCCCAGCTACTCAGGAGGCTGAGGCA AGAGGATGGC chr4:8565117-8565217 - 14 9.66e-19 GGCGGGCGCC TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA GAATGGCGTG chr7:55114876-55114976 - 30 9.66e-19 GGCGGGCACC TGTAGTCCCAGCTACTCAGGAGGCTGAGGCA GGAGAATGGT chr8:38068836-38068936 - 21 9.66e-19 GGCGGGCACT TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA GGAGAATGGT chr3:23273257-23273357 + 52 9.66e-19 ggcggacgcc tgtagtcccagctacttgggaggctgaggca ggagaatggt chr4:169577485-169577585 + 60 9.66e-19 ggtgggcgcc tgtagtcccagctacttgggaggctgaggca ggagaatggc chr1:71656400-71656500 - 25 1.87e-18 GGCGGGCGCC TGTAATCCCAGCTACTCGGGAGGCTGAGGCA GGAGAATGGC chr6:115764853-115764953 + 52 2.17e-18 ggcaggtgcc tgtagtcccagctactctggaggctgaggca ggagaatagt chr8:90875730-90875830 + 64 2.17e-18 ggcaggcgcc tgtagtcccagctactctggaggctgaggca ggagaa chr4:95267949-95268049 - 18 3.44e-18 GGCGGGCGCC TGTAGTCCCAGCTACTCCGGAGGCTGAGGCA GAAGAATGGC chr4:54875995-54876095 + 47 3.44e-18 ggcaggcgcc tgtagtcccagctactcgggagactgaggca ggagaatggc chr5:55666746-55666846 + 46 3.44e-18 ggtgggtgcc tgtagttccagctactcgggaggctgaggca ggagaatggc chr6:9773569-9773669 - 17 3.80e-18 GGTGGGCTCC TGTAGTCCCAGCTACACGGGAGGCTGAGGCA GGAGAGTGGC chr3:81342349-81342449 + 48 7.43e-18 ggccggcgcc tgtagtcccatctactcgggaggctgaggca ggagaatggc chr1:9769760-9769860 + 54 7.43e-18 ggcggactcc tgtagtcccagctaatcgggaggctgaggca ggagaatggc chr4:70837949-70838049 + 52 7.43e-18 ggcgggcgcc tgtagtcccagctactcgggaggctgaagca ggagaatggc chr4:30303387-30303487 + 52 7.43e-18 ggggggcacc tgtagtcctagctactcgggaggctgaggca ggagaatggc chr6:37087307-37087407 - 9 7.43e-18 GACGGGCGCC TGTAGTCCCAACTACTCGGGAGGCTGAGGCA GGAGAATG chr3:188098879-188098979 + 53 7.43e-18 ggcgggcgcc tgtagtcccagctactggggaggctgaggca ggagaattgc chr7:31615749-31615849 - 20 8.52e-18 GGCAGGCCCC TGTAGTCCCAGGTACTCGGGAGGCTGAGGCA GGAGATTGGC chr1:224951644-224951744 - 22 1.12e-17 GGTGGGCGCC TGTAGTCCCAGCTACTCGGGAGGCGGAGGCA GGAGAATGGT chr3:183089371-183089471 + 44 1.12e-17 agcaagtgcc tgtagtcccagctactcaggaggctgaggta ggaggattgc chr5:1397273-1397373 + 5 1.12e-17 tgcc tgcagtcccagctactcgggaggctgaggca ggagaatggc chr5:34293164-34293264 - 24 1.12e-17 GGCGGGTGCC TGTAGTCCCAGCTGCTCGGGAGGCTGAGGCA GGAGAATGGC chr7:48596528-48596628 + 49 1.22e-17 ggcgggcgcc tgtagtcccagctactcaagaggctgaggca ggagaatgtc chr2:89843353-89843453 - 11 1.30e-17 GGCGGACACC TGTAGTCCCAGCTACTCAGGAGGCTGAGGAA GGAGAATGGC chr5:30056431-30056531 + 44 1.43e-17 ggcgggcgcc tgtagttccagctacttgggaggctgaggca ggagaatggc chr1:178332610-178332710 - 18 2.09e-17 GGCGGGCACC TGTAGTCCCAGCTATTTGGGAGGCTGAGGCA GGAGAATGGC chr1:228257623-228257723 - 26 2.45e-17 GGCGGGTGCC TGTAGTCCCAGCTACTCAGGAGGCTGAGGCT GGAGAATGGC chr6:74868120-74868220 - 34 2.45e-17 GGCGGGCGCC TGTAGTCCCAGCTACTCGAGAGGCTGAGGAA GGAGAATGGC chr6:17272373-17272473 - 25 2.72e-17 GGCGGGTGCC TGTAATCCCAGCTACTCCGGAGGCTGAGGCA GGAGAATTGC chr6:111525679-111525779 + 52 3.11e-17 ggcaggcgcc tgtagtcccagctactcaggaggctggggca agagaatggc chr3:45390624-45390724 - 33 3.62e-17 GGCGGGCGCC TGTAGTCCCAGCTACTAGAGAGGCTGAGGCA GGAGAAAGGC chr2:171091763-171091863 - 9 3.92e-17 GGCAGGCGCC TGTAGTCCCAGCTACTCGGGAGGCTGAGATA GGAGAACG chr6:150117075-150117175 - 10 5.15e-17 GGCGGGCGCC TGTAGTCCCAGCTACCCGGGAGGCTGAGGTA GGCGAATGG chr2:70124689-70124789 + 53 7.41e-17 gacgggcgcc tgtagtcccagctacacgggaggctaaggca ggagaatggc chr2:64353807-64353907 + 51 8.09e-17 ggtgggcgcc tgtagtcccagctactcgggagactgacgca ggagaatggc chr4:169106126-169106226 - 37 1.63e-16 GGCGAGTCCC TGTAATCCCAGCTACTTGGGAAGCTGAGGCA GGAGAATCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:65170094-65170194 3.6e-19 62_[+10]_7 chr5:65895558-65895658 3.6e-19 52_[+10]_17 chr1:16962263-16962363 3.6e-19 48_[+10]_21 chr6:161897699-161897799 3.6e-19 51_[+10]_18 chr1:219510196-219510296 3.6e-19 44_[-10]_25 chr6:132079627-132079727 3.6e-19 56_[+10]_13 chr5:169853854-169853954 3.6e-19 8_[-10]_61 chr1:38484730-38484830 3.6e-19 49_[+10]_20 chr4:177525891-177525991 3.6e-19 1_[-10]_68 chr5:2561152-2561252 3.6e-19 59_[+10]_10 chr6:100509618-100509718 3.6e-19 51_[+10]_18 chr2:182532676-182532776 3.6e-19 49_[+10]_20 chr2:91491856-91491956 9.7e-19 23_[-10]_46 chr4:8565117-8565217 9.7e-19 13_[-10]_56 chr7:55114876-55114976 9.7e-19 29_[-10]_40 chr8:38068836-38068936 9.7e-19 20_[-10]_49 chr3:23273257-23273357 9.7e-19 51_[+10]_18 chr4:169577485-169577585 9.7e-19 59_[+10]_10 chr1:71656400-71656500 1.9e-18 24_[-10]_45 chr6:115764853-115764953 2.2e-18 51_[+10]_18 chr8:90875730-90875830 2.2e-18 63_[+10]_6 chr4:95267949-95268049 3.4e-18 17_[-10]_52 chr4:54875995-54876095 3.4e-18 46_[+10]_23 chr5:55666746-55666846 3.4e-18 45_[+10]_24 chr6:9773569-9773669 3.8e-18 16_[-10]_53 chr3:81342349-81342449 7.4e-18 47_[+10]_22 chr1:9769760-9769860 7.4e-18 53_[+10]_16 chr4:70837949-70838049 7.4e-18 51_[+10]_18 chr4:30303387-30303487 7.4e-18 51_[+10]_18 chr6:37087307-37087407 7.4e-18 8_[-10]_61 chr3:188098879-188098979 7.4e-18 52_[+10]_17 chr7:31615749-31615849 8.5e-18 19_[-10]_50 chr1:224951644-224951744 1.1e-17 21_[-10]_48 chr3:183089371-183089471 1.1e-17 43_[+10]_26 chr5:1397273-1397373 1.1e-17 4_[+10]_65 chr5:34293164-34293264 1.1e-17 23_[-10]_46 chr7:48596528-48596628 1.2e-17 48_[+10]_21 chr2:89843353-89843453 1.3e-17 10_[-10]_59 chr5:30056431-30056531 1.4e-17 43_[+10]_26 chr1:178332610-178332710 2.1e-17 17_[-10]_52 chr1:228257623-228257723 2.5e-17 25_[-10]_44 chr6:74868120-74868220 2.5e-17 33_[-10]_36 chr6:17272373-17272473 2.7e-17 24_[-10]_45 chr6:111525679-111525779 3.1e-17 51_[+10]_18 chr3:45390624-45390724 3.6e-17 32_[-10]_37 chr2:171091763-171091863 3.9e-17 8_[-10]_61 chr6:150117075-150117175 5.2e-17 9_[-10]_60 chr2:70124689-70124789 7.4e-17 52_[+10]_17 chr2:64353807-64353907 8.1e-17 50_[+10]_19 chr4:169106126-169106226 1.6e-16 36_[-10]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA width=31 seqs=50 chr1:65170094-65170194 ( 63) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr5:65895558-65895658 ( 53) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr1:16962263-16962363 ( 49) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr6:161897699-161897799 ( 52) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr1:219510196-219510296 ( 45) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr6:132079627-132079727 ( 57) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr5:169853854-169853954 ( 9) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr1:38484730-38484830 ( 50) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr4:177525891-177525991 ( 2) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr5:2561152-2561252 ( 60) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr6:100509618-100509718 ( 52) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr2:182532676-182532776 ( 50) TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr2:91491856-91491956 ( 24) TGTAGTCCCAGCTACTCAGGAGGCTGAGGCA 1 chr4:8565117-8565217 ( 14) TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA 1 chr7:55114876-55114976 ( 30) TGTAGTCCCAGCTACTCAGGAGGCTGAGGCA 1 chr8:38068836-38068936 ( 21) TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA 1 chr3:23273257-23273357 ( 52) TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA 1 chr4:169577485-169577585 ( 60) TGTAGTCCCAGCTACTTGGGAGGCTGAGGCA 1 chr1:71656400-71656500 ( 25) TGTAATCCCAGCTACTCGGGAGGCTGAGGCA 1 chr6:115764853-115764953 ( 52) TGTAGTCCCAGCTACTCTGGAGGCTGAGGCA 1 chr8:90875730-90875830 ( 64) TGTAGTCCCAGCTACTCTGGAGGCTGAGGCA 1 chr4:95267949-95268049 ( 18) TGTAGTCCCAGCTACTCCGGAGGCTGAGGCA 1 chr4:54875995-54876095 ( 47) TGTAGTCCCAGCTACTCGGGAGACTGAGGCA 1 chr5:55666746-55666846 ( 46) TGTAGTTCCAGCTACTCGGGAGGCTGAGGCA 1 chr6:9773569-9773669 ( 17) TGTAGTCCCAGCTACACGGGAGGCTGAGGCA 1 chr3:81342349-81342449 ( 48) TGTAGTCCCATCTACTCGGGAGGCTGAGGCA 1 chr1:9769760-9769860 ( 54) TGTAGTCCCAGCTAATCGGGAGGCTGAGGCA 1 chr4:70837949-70838049 ( 52) TGTAGTCCCAGCTACTCGGGAGGCTGAAGCA 1 chr4:30303387-30303487 ( 52) TGTAGTCCTAGCTACTCGGGAGGCTGAGGCA 1 chr6:37087307-37087407 ( 9) TGTAGTCCCAACTACTCGGGAGGCTGAGGCA 1 chr3:188098879-188098979 ( 53) TGTAGTCCCAGCTACTGGGGAGGCTGAGGCA 1 chr7:31615749-31615849 ( 20) TGTAGTCCCAGGTACTCGGGAGGCTGAGGCA 1 chr1:224951644-224951744 ( 22) TGTAGTCCCAGCTACTCGGGAGGCGGAGGCA 1 chr3:183089371-183089471 ( 44) TGTAGTCCCAGCTACTCAGGAGGCTGAGGTA 1 chr5:1397273-1397373 ( 5) TGCAGTCCCAGCTACTCGGGAGGCTGAGGCA 1 chr5:34293164-34293264 ( 24) TGTAGTCCCAGCTGCTCGGGAGGCTGAGGCA 1 chr7:48596528-48596628 ( 49) TGTAGTCCCAGCTACTCAAGAGGCTGAGGCA 1 chr2:89843353-89843453 ( 11) TGTAGTCCCAGCTACTCAGGAGGCTGAGGAA 1 chr5:30056431-30056531 ( 44) TGTAGTTCCAGCTACTTGGGAGGCTGAGGCA 1 chr1:178332610-178332710 ( 18) TGTAGTCCCAGCTATTTGGGAGGCTGAGGCA 1 chr1:228257623-228257723 ( 26) TGTAGTCCCAGCTACTCAGGAGGCTGAGGCT 1 chr6:74868120-74868220 ( 34) TGTAGTCCCAGCTACTCGAGAGGCTGAGGAA 1 chr6:17272373-17272473 ( 25) TGTAATCCCAGCTACTCCGGAGGCTGAGGCA 1 chr6:111525679-111525779 ( 52) TGTAGTCCCAGCTACTCAGGAGGCTGGGGCA 1 chr3:45390624-45390724 ( 33) TGTAGTCCCAGCTACTAGAGAGGCTGAGGCA 1 chr2:171091763-171091863 ( 9) TGTAGTCCCAGCTACTCGGGAGGCTGAGATA 1 chr6:150117075-150117175 ( 10) TGTAGTCCCAGCTACCCGGGAGGCTGAGGTA 1 chr2:70124689-70124789 ( 53) TGTAGTCCCAGCTACACGGGAGGCTAAGGCA 1 chr2:64353807-64353907 ( 51) TGTAGTCCCAGCTACTCGGGAGACTGACGCA 1 chr4:169106126-169106226 ( 37) TGTAATCCCAGCTACTTGGGAAGCTGAGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 41459 bayes= 11.3032 E= 8.3e-573 -1229 -1229 -1229 214 -1229 -1229 187 -1229 -1229 -377 -1229 211 214 -1229 -1229 -1229 -192 -1229 179 -1229 -1229 -1229 -1229 214 -1229 182 -1229 -251 -1229 187 -1229 -1229 -1229 185 -1229 -350 214 -1229 -1229 -1229 -350 -1229 182 -350 -1229 185 -377 -1229 -1229 -1229 -1229 214 211 -1229 -377 -1229 -350 182 -1229 -350 -251 -377 -1229 205 -350 159 -377 -70 -70 -277 152 -251 -192 -1229 179 -1229 -1229 -1229 187 -1229 214 -1229 -1229 -1229 -350 -1229 185 -1229 -251 -1229 182 -1229 -1229 187 -1229 -1229 -1229 -1229 -377 211 -350 -1229 185 -1229 211 -1229 -377 -1229 -350 -377 182 -1229 -350 -1229 185 -1229 -251 172 -1229 -192 211 -1229 -1229 -350 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 8.3e-573 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.020000 0.000000 0.980000 1.000000 0.000000 0.000000 0.000000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.960000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 0.000000 0.980000 0.020000 0.000000 0.000000 0.000000 0.000000 1.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.960000 0.000000 0.020000 0.040000 0.020000 0.000000 0.940000 0.020000 0.820000 0.020000 0.140000 0.140000 0.040000 0.780000 0.040000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.040000 0.000000 0.960000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.020000 0.980000 0.020000 0.000000 0.980000 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.020000 0.960000 0.000000 0.020000 0.000000 0.980000 0.000000 0.040000 0.900000 0.000000 0.060000 0.980000 0.000000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA MEME-10 regular expression -------------------------------------------------------------------------------- TGTAGTCCCAGCTACTCGGGAGGCTGAGGCA -------------------------------------------------------------------------------- Time 8588.88 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:42532756-42532856 2.75e-71 11_[+9(9.66e-19)]_34_[+4(5.22e-12)]_\ 2 chr3:188098879-188098979 8.16e-111 1_[-1(6.89e-20)]_20_[+10(7.43e-18)]_\ 17 chr7:29068682-29068782 4.60e-72 23_[-10(3.63e-19)]_22_\ [+4(3.97e-12)]_2 chr3:13307603-13307703 1.73e-67 [+3(4.41e-18)]_18_[+7(8.91e-16)]_24 chr4:169106126-169106226 2.27e-47 36_[-10(1.63e-16)]_33 chr1:9745142-9745242 2.26e-20 64_[-5(6.89e-20)]_5 chr2:23572696-23572796 5.13e-90 20_[-10(9.66e-19)]_18_\ [+2(3.43e-17)] chr8:108462742-108462835 2.91e-01 93 chr6:74868120-74868220 5.04e-45 33_[-10(2.45e-17)]_36 chr3:50094156-50094256 5.07e-75 13_[+8(6.64e-19)]_25_[-3(1.44e-12)] chr3:39408817-39408917 8.44e-44 [+3(7.13e-18)]_18_[+7(9.34e-12)]_24 chr4:180931124-180931224 7.03e-01 100 chr1:199979482-199979582 2.50e-79 4_[+9(1.07e-17)]_39_[+4(5.32e-14)]_\ 4 chr1:92123686-92123786 2.67e-15 68_[-5(1.26e-19)]_1 chr8:26211657-26211757 1.21e-20 59_[-5(3.98e-16)]_10 chr1:230835339-230835439 6.50e-01 100 chr5:4195413-4195513 6.33e-01 100 chr2:72189851-72189951 4.11e-01 100 chr6:157927718-157927818 7.06e-01 100 chr1:214884190-214884290 5.81e-01 100 chr5:62499569-62499669 3.66e-25 8_[+5(6.89e-20)]_61 chr2:66877774-66877874 1.62e-01 100 chr1:22195016-22195116 3.74e-40 36_[+10(2.09e-16)]_33 chr4:183339070-183339170 2.42e-104 16_[-10(3.63e-19)]_20_\ [+2(2.95e-16)]_2 chr8:3248523-3248623 1.78e-19 4_[+5(2.60e-18)]_65 chr3:28535167-28535267 1.72e-54 [-4(2.32e-05)]_31_[-9(8.24e-18)]_16 chr7:98530002-98530094 5.54e-07 66_[-4(2.74e-07)]_4 chr5:22349743-22349843 8.53e-01 100 chr3:105435778-105435878 3.78e-01 100 chr7:109040406-109040506 5.35e-112 9_[+3(6.89e-20)]_16_[+10(9.66e-19)]_\ 13 chr6:5536044-5536144 5.34e-85 16_[+9(9.66e-19)]_22_[-3(2.98e-19)] chr2:104068062-104068162 3.91e-01 100 chr8:51814587-51814687 5.50e-59 11_[-9(9.66e-19)]_58 chr1:28512807-28512907 1.09e-53 7_[+8(8.82e-15)]_27_[+5(2.14e-08)]_\ 4 chr1:179976533-179976633 6.61e-01 100 chr7:89834307-89834407 9.88e-02 11_[+10(7.66e-05)]_58 chr1:188244583-188244683 4.59e-01 100 chr6:78678869-78678969 5.04e-78 2_[+3(4.49e-17)]_25_[-9(3.32e-16)]_\ 11 chr2:209003094-209003194 1.78e-01 100 chr5:111005145-111005245 1.31e-81 3_[+3(2.98e-19)]_16_[+10(3.49e-15)]_\ 19 chr3:166513676-166513776 2.23e-114 9_[+8(6.64e-19)]_25_[-3(1.26e-19)]_\ 4 chr4:71967015-71967115 4.56e-01 100 chr3:2121899-2121999 1.88e-71 1_[-4(9.42e-09)]_23_[+10(3.63e-19)]_\ 23 chr3:177233677-177233777 5.77e-34 64_[+8(3.63e-19)]_5 chr5:138204622-138204722 7.46e-121 17_[-10(3.63e-19)]_20_\ [+1(6.89e-20)]_1 chr6:17272373-17272473 8.91e-61 24_[-10(2.72e-17)]_21_\ [+4(5.32e-14)]_2 chr6:118786071-118786171 1.50e-107 3_[-2(2.95e-16)]_20_[+10(3.63e-19)]_\ 15 chr7:2321423-2321523 6.25e-77 10_[+9(9.66e-19)]_25_[-3(7.83e-15)]_\ 3 chr3:9958782-9958882 7.50e-55 63_[-10(9.66e-19)]_6 chr8:94544390-94544490 9.19e-56 3_[-4(1.28e-08)]_30_[-9(3.00e-16)]_\ 14 chr5:171594986-171595086 1.60e-79 4_[+3(9.23e-10)]_16_[+10(3.63e-19)]_\ 18 chr1:244553279-244553379 1.16e-12 75_[-6(5.07e-11)]_2 chr7:79846340-79846430 1.68e-22 6_[+5(1.83e-19)]_53 chr6:10918088-10918188 3.61e-01 100 chr3:85817739-85817837 3.23e-12 58_[-5(2.32e-12)]_9 chr1:11008673-11008773 4.74e-85 [+3(6.89e-20)]_25_[-9(9.66e-19)]_13 chr4:37543559-37543659 5.41e-86 9_[+3(1.68e-10)]_16_[+10(3.63e-19)]_\ 13 chr2:186959910-186960010 2.21e-57 33_[+8(6.64e-19)]_36 chr8:15388706-15388806 2.49e-01 100 chr2:164168800-164168865 9.88e-01 65 chr4:144121186-144121286 5.09e-02 68_[-5(3.36e-06)]_1 chr5:122083049-122083149 3.86e-24 61_[-5(6.26e-19)]_8 chr4:186120845-186120945 5.70e-01 100 chr4:90423821-90423921 7.62e-112 4_[+3(1.26e-19)]_25_[-8(3.63e-19)]_\ 9 chr2:78558871-78558971 4.22e-21 6_[+5(6.89e-20)]_63 chr1:167285322-167285422 1.09e-99 6_[+3(2.34e-17)]_25_[-9(8.24e-18)]_\ 7 chr2:202837282-202837382 9.22e-115 9_[+8(6.64e-19)]_29_[+1(1.26e-19)] chr6:21805512-21805597 9.94e-01 85 chr6:102192570-102192670 1.05e-118 2_[-2(6.89e-20)]_27_[-8(6.64e-19)]_\ 9 chr5:157842343-157842443 8.93e-02 100 chr5:55666746-55666846 3.90e-69 2_[-4(5.32e-14)]_30_[-8(3.63e-19)]_\ 15 chr3:96624544-96624644 2.75e-114 15_[-10(3.63e-19)]_20_\ [+1(7.04e-19)]_3 chr4:99542732-99542832 5.52e-78 [-1(1.76e-11)]_28_[-8(9.66e-19)]_10 chr4:169577485-169577585 9.07e-124 9_[-1(1.26e-19)]_28_[-9(9.66e-19)]_\ 1 chr5:140285252-140285352 4.60e-02 77_[-4(2.27e-05)]_1 chr8:14751849-14751949 4.45e-09 61_[-5(4.94e-10)]_8 chr1:12651828-12651928 1.39e-80 5_[+9(9.66e-19)]_37_[+4(5.32e-14)]_\ 5 chr5:34293164-34293264 9.32e-68 14_[+8(8.16e-18)]_31_[+4(7.48e-14)]_\ 2 chr1:166334412-166334512 1.37e-68 14_[+9(9.66e-19)]_29_[+4(2.90e-09)]_\ 4 chr5:1397273-1397373 1.19e-55 13_[-8(3.63e-19)]_56 chr2:190688827-190688927 2.73e-70 14_[+8(3.63e-19)]_30_[+4(5.32e-14)]_\ 3 chr8:31763940-31764023 9.52e-18 50_[-5(4.41e-19)]_2 chr2:128683794-128683894 1.65e-55 6_[-1(5.89e-07)]_11_[-9(1.72e-17)]_\ 21 chr6:158598661-158598761 2.33e-66 15_[+8(5.69e-18)]_30_[+4(1.81e-13)]_\ 2 chr3:47733604-47733704 8.21e-70 3_[-4(7.48e-14)]_22_[+10(3.63e-19)]_\ 22 chr5:25618440-25618540 9.27e-01 100 chr8:20067806-20067906 5.58e-70 3_[-4(5.22e-12)]_21_[+10(3.63e-19)]_\ 23 chr5:122932588-122932688 2.05e-62 [+3(1.03e-14)]_26_[-8(5.00e-15)]_12 chr7:121934420-121934512 9.26e-27 52_[-5(6.89e-20)]_9 chr3:94045680-94045780 2.31e-73 [+3(4.49e-17)]_25_[-8(1.07e-17)]_13 chr2:151626539-151626639 3.12e-50 32_[-10(1.22e-17)]_37 chr1:23248699-23248799 6.51e-01 100 chr7:138357567-138357667 3.31e-85 18_[-7(1.81e-14)]_20_[+2(1.58e-16)]_\ 4 chr3:43470345-43470445 2.29e-55 48_[-10(9.66e-19)]_21 chr7:28949334-28949434 1.11e-66 4_[-2(1.60e-09)]_28_[-8(3.54e-17)]_\ 6 chr3:21787830-21787930 1.81e-01 100 chr8:9005504-9005604 1.96e-102 18_[+8(6.64e-19)]_19_[+2(6.89e-20)]_\ 1 chr5:38016117-38016217 2.69e-26 61_[-5(3.46e-19)]_8 chr8:102148893-102148993 2.19e-60 3_[+10(3.63e-19)]_66 chr3:130320737-130320836 1.76e-19 11_[+5(3.14e-16)]_57 chr2:94700370-94700465 1.26e-23 52_[-5(4.22e-17)]_12 chr4:168188287-168188387 1.59e-121 12_[+3(6.89e-20)]_25_[-9(9.66e-19)]_\ 1 chr1:20087400-20087500 5.16e-01 100 chr5:138134729-138134829 2.80e-59 13_[-7(9.53e-08)]_22_[+1(1.17e-17)]_\ 7 chr1:12023419-12023519 9.46e-74 17_[-10(3.63e-19)]_22_\ [+4(1.83e-08)]_8 chr8:90875730-90875830 2.12e-66 4_[-2(1.85e-15)]_28_[+10(2.17e-18)]_\ 6 chr3:65244861-65244961 6.25e-14 2_[+5(3.41e-16)]_67 chr8:122014714-122014814 7.05e-01 100 chr1:23700911-23701011 1.40e-01 [+5(3.91e-05)]_69 chr7:6397059-6397159 2.78e-43 11_[-9(7.26e-16)]_58 chr5:149192494-149192594 8.20e-01 100 chr1:180414967-180415067 7.77e-01 100 chr2:71354986-71355086 4.87e-99 [+9(2.38e-14)]_29_[+1(1.26e-19)]_9 chr2:116762668-116762768 1.72e-01 100 chr1:228330928-228331028 1.04e-78 12_[+8(9.66e-19)]_25_[-3(1.81e-18)]_\ 1 chr8:123421676-123421776 2.48e-64 13_[+8(3.63e-19)]_25_[-3(9.55e-11)] chr7:72032052-72032152 3.09e-80 12_[+8(6.64e-19)]_25_[-3(2.14e-15)]_\ 1 chr5:103666115-103666215 6.03e-01 100 chr1:166668263-166668363 1.13e-60 24_[-10(2.09e-17)]_21_\ [+4(5.32e-14)]_2 chr7:63633087-63633187 6.95e-115 5_[+8(6.64e-19)]_29_[+1(6.89e-20)]_\ 4 chr3:1010775-1010875 3.82e-01 100 chr6:29456241-29456341 2.92e-106 3_[-1(6.89e-20)]_29_[-9(1.03e-15)]_\ 6 chr3:72703566-72703666 1.01e-72 3_[-4(2.77e-13)]_21_[+10(3.63e-19)]_\ 23 chr8:118817931-118818031 9.61e-01 100 chr1:9492512-9492612 8.62e-01 100 chr2:194578441-194578541 7.10e-02 100 chr7:129002770-129002870 1.03e-80 1_[+3(6.89e-20)]_25_[-9(5.20e-18)]_\ 12 chr6:37087307-37087407 1.40e-49 8_[-10(7.43e-18)]_36_[+4(5.32e-14)]_\ 3 chr7:99952591-99952689 1.14e-22 59_[-5(1.06e-16)]_8 chr3:196884668-196884768 1.66e-24 44_[+9(2.11e-12)]_25 chr2:207655341-207655441 6.88e-01 100 chr3:183089371-183089471 6.26e-51 [-4(7.47e-08)]_21_[+10(1.12e-17)]_\ 26 chr5:27640301-27640401 4.81e-01 100 chr1:8218186-8218286 2.94e-01 100 chr8:91421031-91421131 1.24e-64 4_[+8(9.66e-19)]_38_[+4(1.85e-07)]_\ 5 chr6:28191667-28191767 6.44e-01 100 chr6:115329586-115329686 6.94e-58 16_[+9(4.90e-18)]_30_[+4(1.92e-11)]_\ 1 chr1:89826283-89826383 6.63e-122 9_[-10(3.63e-19)]_20_[+1(1.83e-19)]_\ 9 chr2:182532676-182532776 3.72e-77 [-2(2.59e-17)]_18_[+10(3.63e-19)]_\ 20 chr4:95292269-95292369 8.88e-01 100 chr4:73118025-73118125 9.33e-43 17_[+8(6.78e-16)]_30_[+4(4.93e-06)] chr1:228257623-228257723 4.65e-58 25_[-10(2.45e-17)]_20_\ [+4(1.05e-08)]_2 chr4:109356692-109356792 3.91e-66 10_[+8(3.91e-15)]_25_[-3(1.27e-14)]_\ 3 chr7:75783518-75783618 1.67e-87 1_[+3(2.98e-19)]_16_[+10(3.63e-19)]_\ 21 chr3:171913148-171913248 6.80e-66 15_[+9(9.66e-19)]_30_[+4(5.32e-14)]_\ 2 chr6:22057046-22057146 4.11e-81 21_[-10(3.63e-19)]_22_\ [+4(7.48e-14)]_4 chr2:152177580-152177680 4.21e-01 100 chr3:189312220-189312320 1.60e-27 68_[+8(6.40e-16)]_1 chr4:30303387-30303487 1.46e-71 5_[-4(4.09e-10)]_33_[-8(3.63e-19)]_\ 9 chr3:23273257-23273357 3.00e-82 4_[-4(5.32e-14)]_34_[-9(9.66e-19)]_\ 9 chr6:51794052-51794152 4.36e-57 64_[-10(3.63e-19)]_5 chr1:24423373-24423473 6.09e-79 7_[+3(1.73e-11)]_25_[-9(1.58e-18)]_\ 6 chr1:17329217-17329317 9.13e-01 100 chr5:98636476-98636576 3.93e-17 63_[-5(1.13e-14)]_6 chr3:49259697-49259785 2.35e-14 55_[-5(1.71e-17)]_2 chr1:203897620-203897720 9.02e-55 49_[-9(2.48e-18)]_20 chr2:163968322-163968422 5.37e-58 1_[-4(7.48e-14)]_31_[-9(1.74e-16)]_\ 15 chr3:99610147-99610229 2.18e-07 1_[+5(2.62e-13)]_50 chr8:17656789-17656889 1.08e-71 [+3(6.89e-20)]_25_[-8(1.15e-15)]_13 chr4:177807431-177807531 1.09e-70 3_[-4(5.73e-13)]_30_[-8(3.63e-19)]_\ 14 chr3:17876696-17876796 7.02e-01 100 chr5:146175557-146175657 1.60e-70 [+3(2.04e-14)]_26_[-9(5.81e-18)]_12 chr2:12908178-12908278 9.63e-01 100 chr2:89843353-89843453 1.10e-118 10_[-10(1.30e-17)]_18_\ [+2(6.89e-20)]_10 chr5:92256252-92256349 1.09e-01 97 chr4:163679613-163679713 1.03e-118 8_[+8(3.63e-19)]_27_[+2(6.89e-20)]_\ 3 chr5:79153114-79153214 8.18e-90 7_[+8(1.33e-18)]_31_[+2(2.95e-16)] chr1:43744585-43744655 9.80e-01 70 chr3:165073251-165073326 5.21e-01 75 chr6:162160764-162160864 5.48e-01 100 chr3:107763226-107763326 6.11e-01 100 chr7:2370793-2370893 8.69e-93 1_[-2(3.27e-15)]_18_[+10(3.63e-19)]_\ 19 chr4:52987028-52987128 2.88e-98 18_[-10(3.32e-15)]_20_\ [+1(6.89e-20)] chr6:53476593-53476693 5.10e-08 66_[-5(4.61e-11)]_3 chr1:91905424-91905524 8.50e-37 34_[-10(6.29e-15)]_35 chr6:118594587-118594687 3.74e-75 1_[+3(6.89e-20)]_25_[-8(5.69e-18)]_\ 12 chr3:132645982-132646082 1.31e-110 6_[+8(2.09e-17)]_27_[+2(6.89e-20)]_\ 5 chr6:98219531-98219631 2.48e-85 7_[+8(4.81e-16)]_28_[+2(2.41e-15)]_\ 3 chr3:122983584-122983684 7.72e-01 100 chr1:238580518-238580618 2.00e-106 5_[-2(6.72e-16)]_18_[+10(3.63e-19)]_\ 15 chr5:52000008-52000108 5.32e-15 68_[-5(6.26e-19)]_1 chr8:108499902-108499998 1.76e-02 [+5(7.81e-07)]_65 chr1:202092764-202092864 2.60e-38 53_[+9(4.80e-15)]_16 chr3:6670355-6670455 2.95e-01 100 chr1:44794228-44794328 7.36e-109 2_[-1(6.21e-19)]_29_[-8(6.64e-19)]_\ 7 chr7:71902119-71902219 6.14e-01 100 chr3:185963527-185963627 4.85e-77 [-4(5.32e-14)]_40_[-8(3.63e-19)]_7 chr6:157504208-157504308 7.65e-30 52_[+5(4.53e-13)]_17 chr3:108844319-108844419 8.71e-04 1_[+5(3.36e-06)]_68 chr4:176392215-176392315 1.19e-12 67_[-5(4.57e-17)]_2 chr4:158688407-158688507 1.84e-82 [-2(3.60e-14)]_18_[+10(9.66e-19)]_\ 20 chr2:184132398-184132498 7.45e-60 [-2(4.73e-09)]_26_[-9(2.95e-17)]_12 chr5:22046426-22046526 3.39e-01 100 chr4:70837949-70838049 3.04e-112 [-1(6.89e-20)]_29_[-9(1.88e-18)]_9 chr7:137149714-137149814 2.16e-92 10_[+8(8.16e-18)]_27_[+2(6.89e-20)]_\ 1 chr2:208603806-208603906 4.02e-81 4_[+3(1.63e-09)]_26_[-8(6.64e-19)]_\ 8 chr6:142338013-142338113 4.93e-77 12_[+8(3.63e-19)]_25_[-3(7.13e-18)]_\ 1 chr3:129784296-129784396 1.02e-102 3_[-1(6.89e-20)]_29_[-8(3.18e-17)]_\ 6 chr2:228631980-228632080 1.49e-68 4_[+3(1.07e-09)]_16_[+10(7.43e-18)]_\ 18 chr3:85426895-85426984 5.97e-01 89 chr6:148099650-148099750 2.57e-08 [+5(2.32e-12)]_69 chr1:30752819-30752919 2.49e-96 8_[+9(1.34e-15)]_25_[-3(1.25e-17)]_\ 5 chr5:78962524-78962624 1.19e-31 54_[+8(5.90e-16)]_15 chr6:96602426-96602526 6.47e-01 100 chr2:71199571-71199671 9.07e-01 100 chr1:105325047-105325147 1.11e-23 59_[-5(5.54e-15)]_10 chr1:178332610-178332710 1.71e-81 8_[+9(1.31e-17)]_30_[+2(1.09e-14)] chr3:58460762-58460862 1.39e-101 2_[+3(1.26e-19)]_16_[+10(3.63e-19)]_\ 20 chr2:48231432-48231532 9.81e-68 3_[-4(5.32e-14)]_21_[+10(9.66e-19)]_\ 23 chr6:103456170-103456270 7.57e-01 100 chr8:20392125-20392225 7.92e-122 17_[-10(3.63e-19)]_18_\ [+2(6.89e-20)]_3 chr5:22937356-22937456 1.38e-24 63_[+9(1.34e-15)]_6 chr1:28454264-28454364 3.87e-64 15_[+9(2.48e-18)]_30_[+4(5.32e-14)]_\ 2 chr4:101443931-101444021 1.95e-19 5_[+5(3.77e-18)]_54 chr7:2591920-2592020 1.64e-15 24_[-10(9.75e-11)]_45 chr5:23910327-23910427 2.87e-73 2_[-4(5.32e-14)]_21_[+10(3.63e-19)]_\ 24 chr5:20249382-20249482 4.79e-103 9_[+9(4.90e-18)]_29_[+1(1.03e-18)] chr1:16185573-16185673 1.80e-89 19_[-10(9.66e-19)]_18_\ [+2(1.33e-17)]_1 chr4:36155647-36155747 1.81e-10 3_[+5(2.84e-15)]_66 chr1:24259335-24259435 1.92e-56 27_[-8(3.63e-19)]_42 chr5:168367322-168367422 2.29e-87 22_[-10(3.63e-19)]_16_\ [-3(6.89e-20)] chr3:136376788-136376888 7.50e-67 19_[-10(9.93e-17)]_24_\ [+4(2.03e-13)]_4 chr8:38068836-38068936 1.15e-100 11_[+9(9.66e-19)]_25_[-3(6.89e-20)]_\ 2 chr7:112985423-112985523 2.93e-04 66_[-10(1.80e-05)]_3 chr3:46361687-46361787 3.00e-01 100 chr6:6404699-6404799 4.57e-80 22_[-10(9.66e-19)]_16_\ [-3(7.13e-18)] chr1:171760649-171760749 2.85e-76 17_[-10(1.44e-15)]_20_\ [+2(1.36e-16)]_1 chr4:168093567-168093667 7.05e-01 100 chr1:213313682-213313782 1.68e-75 4_[-4(6.63e-12)]_31_[-9(9.66e-19)]_\ 12 chr5:29375638-29375738 4.63e-64 13_[+8(2.55e-16)]_25_[-3(1.41e-17)] chr2:9705827-9705927 3.92e-42 40_[+10(5.64e-15)]_29 chr7:87994832-87994932 1.77e-82 8_[+8(6.28e-17)]_30_[+2(6.18e-17)] chr1:67499888-67499988 1.38e-17 8_[+5(5.01e-17)]_61 chr7:73305457-73305557 9.56e-01 100 chr4:56070301-56070401 6.99e-114 17_[-10(3.63e-19)]_18_\ [+2(6.89e-20)]_3 chr4:54875995-54876095 2.13e-70 [+3(1.17e-12)]_15_[+10(3.44e-18)]_\ 23 chr5:73928924-73929024 9.00e-01 100 chr1:231840696-231840796 2.49e-13 12_[+5(9.05e-13)]_57 chr5:118776457-118776557 4.53e-01 100 chr1:121410058-121410158 1.46e-50 31_[+9(1.31e-17)]_38 chr3:179958921-179959021 1.24e-01 100 chr3:195424961-195425054 1.23e-27 50_[-5(6.89e-20)]_12 chr3:45390624-45390724 1.16e-42 32_[-10(3.62e-17)]_37 chr1:169637013-169637100 5.73e-21 51_[-5(1.26e-19)]_5 chr7:20769357-20769457 6.68e-79 12_[+8(3.63e-19)]_25_[-3(2.98e-19)]_\ 1 chr1:54466629-54466729 5.55e-57 55_[+1(3.51e-15)]_14 chr8:78958487-78958587 7.87e-72 4_[+3(1.07e-09)]_24_[-8(5.69e-18)]_\ 10 chr2:135450188-135450288 1.28e-09 57_[-5(4.30e-09)]_12 chr7:34487034-34487134 1.02e-74 1_[-4(7.48e-14)]_25_[+10(3.63e-19)]_\ 21 chr3:51258507-51258607 9.69e-01 100 chr3:133008714-133008814 3.82e-122 9_[+3(6.89e-20)]_16_[+10(3.63e-19)]_\ 13 chr1:71656400-71656500 7.85e-71 15_[+8(3.63e-19)]_30_[+4(4.40e-13)]_\ 2 chr4:75720233-75720333 1.59e-99 3_[-2(4.11e-18)]_18_[+10(2.72e-17)]_\ 17 chr5:7443370-7443470 1.70e-73 3_[-4(5.32e-14)]_21_[+10(3.63e-19)]_\ 23 chr4:171623197-171623297 7.21e-71 23_[-10(3.63e-19)]_21_\ [+4(5.22e-12)]_3 chr2:164533224-164533324 6.34e-79 22_[-10(3.63e-19)]_16_\ [-3(1.03e-14)] chr8:66706201-66706301 3.07e-75 21_[-10(3.63e-19)]_16_\ [-3(6.58e-11)]_1 chr7:148317703-148317803 1.32e-111 20_[-10(1.43e-17)]_11_\ [+2(6.89e-20)]_7 chr3:137126198-137126298 7.49e-71 13_[+9(8.24e-18)]_25_[-3(2.34e-17)] chr5:15343265-15343365 7.64e-01 100 chr7:22656191-22656291 3.00e-49 24_[-10(4.29e-15)]_21_\ [+4(1.31e-11)]_2 chr8:99887962-99888062 2.23e-03 69_[-5(5.66e-07)] chr7:102924636-102924736 2.83e-25 11_[+9(1.84e-07)]_25_[-3(2.40e-09)]_\ 2 chr7:111684260-111684360 2.01e-72 24_[-10(3.63e-19)]_21_\ [+4(5.32e-14)]_2 chr5:14822764-14822864 4.86e-111 7_[+3(7.71e-18)]_16_[+10(3.63e-19)]_\ 15 chr1:239315070-239315170 6.20e-01 100 chr8:31082602-31082702 2.46e-31 13_[-10(7.66e-05)]_3_[-7(2.55e-13)]_\ 26 chr5:130577783-130577883 1.47e-64 1_[-4(2.18e-08)]_31_[-8(6.64e-19)]_\ 15 chr6:45745801-45745901 8.75e-01 100 chr8:38249105-38249205 9.65e-71 11_[+9(3.00e-16)]_25_[-3(4.17e-15)]_\ 2 chr3:161422941-161423041 9.05e-01 100 chr4:130395664-130395764 1.29e-01 62_[+10(3.01e-05)]_7 chr5:56646417-56646517 7.04e-01 100 chr2:126796378-126796478 3.10e-01 100 chr7:119519680-119519780 8.42e-48 26_[+10(8.51e-17)]_7_[+7(1.12e-06)]_\ 9 chr1:186418278-186418378 6.74e-47 61_[+8(3.63e-19)]_8 chr1:204324909-204325009 8.60e-01 100 chr1:25977014-25977114 1.56e-60 28_[-10(3.63e-19)]_41 chr5:59930033-59930133 3.93e-01 100 chr3:133133681-133133781 1.28e-15 4_[+5(2.33e-17)]_65 chr1:23788373-23788473 7.91e-98 [-2(4.11e-18)]_27_[-8(6.64e-19)]_11 chr6:96736695-96736795 7.21e-01 100 chr4:47283951-47284051 7.07e-01 100 chr2:51905893-51905993 5.76e-08 66_[-5(4.81e-11)]_3 chr4:66323944-66324044 2.31e-81 6_[-4(1.03e-09)]_31_[+10(3.63e-19)]_\ 10 chr6:91336175-91336275 5.12e-02 2_[+4(2.27e-05)]_76 chr2:137221030-137221130 4.16e-56 48_[-9(4.90e-18)]_21 chr3:57001915-57002015 1.39e-85 13_[+8(6.64e-19)]_25_[-3(2.98e-19)] chr1:15069519-15069619 3.41e-01 100 chr4:8659669-8659769 1.26e-79 21_[-10(3.63e-19)]_16_\ [-3(1.11e-17)]_1 chr2:41313482-41313582 2.35e-69 15_[+8(6.64e-19)]_32_[+4(2.98e-13)] chr6:34886310-34886380 8.21e-01 70 chr3:26475665-26475765 5.29e-12 [+5(3.69e-16)]_69 chr7:143939749-143939849 5.33e-84 1_[+8(6.64e-19)]_42_[+4(5.32e-14)]_\ 4 chr1:247030741-247030841 4.64e-81 2_[+3(6.97e-14)]_26_[-9(1.54e-17)]_\ 10 chr4:136353316-136353416 1.54e-03 69_[-5(1.20e-07)] chr4:72038896-72038996 6.36e-01 100 chr7:35905522-35905622 8.69e-29 44_[-10(2.96e-12)]_25 chr7:5251966-5252066 6.46e-01 100 chr6:100509618-100509718 2.68e-120 2_[-2(6.89e-20)]_18_[+10(3.63e-19)]_\ 18 chr7:92676823-92676923 6.81e-01 100 chr3:48873697-48873797 3.13e-84 2_[+3(8.49e-17)]_16_[+10(3.63e-19)]_\ 20 chr4:147140762-147140862 3.06e-59 45_[-8(6.64e-19)]_24 chr2:112780755-112780855 4.50e-98 1_[-2(6.89e-20)]_27_[-8(6.64e-19)]_\ 10 chr4:44861148-44861248 7.32e-01 100 chr3:19569054-19569154 9.66e-01 100 chr3:190576831-190576931 5.10e-104 1_[-2(6.89e-20)]_18_[+10(3.63e-19)]_\ 19 chr2:232784382-232784482 5.28e-64 12_[+8(6.64e-19)]_26_[-3(4.87e-18)] chr5:38103816-38103916 5.34e-01 100 chr2:190998507-190998607 7.64e-02 100 chr5:2561152-2561252 1.19e-128 10_[-2(6.89e-20)]_18_\ [+10(3.63e-19)]_10 chr1:210392631-210392731 6.22e-08 39_[+8(2.48e-07)]_30 chr7:117328434-117328534 2.78e-105 2_[-2(6.89e-20)]_27_[-9(3.32e-16)]_\ 9 chr4:177525891-177525991 1.18e-44 1_[-10(3.63e-19)]_16_[-3(1.04e-07)]_\ 21 chr6:34481400-34481500 1.25e-63 4_[-4(7.48e-14)]_22_[+10(1.16e-16)]_\ 21 chr5:112288831-112288911 2.42e-03 [+5(1.94e-06)]_49 chr3:75414206-75414306 1.27e-36 36_[+10(1.24e-14)]_33 chr1:28440391-28440491 6.28e-01 100 chr3:50796044-50796144 2.09e-104 5_[+8(3.63e-19)]_30_[+2(6.18e-17)]_\ 3 chr5:181174897-181174997 1.26e-13 6_[+5(7.51e-16)]_63 chr4:176183099-176183199 5.22e-01 100 chr3:170347183-170347283 1.50e-109 16_[-10(7.43e-18)]_16_\ [-3(6.89e-20)]_6 chr3:90140138-90140238 1.23e-08 [+4(4.28e-09)]_78 chr5:128723513-128723613 5.35e-13 12_[+5(5.32e-12)]_57 chr7:130563622-130563722 2.92e-01 64_[+10(9.93e-05)]_5 chr2:42477427-42477527 8.10e-01 100 chr3:5789191-5789291 4.58e-01 100 chr7:74888130-74888230 9.26e-01 100 chr6:106462161-106462261 3.22e-81 13_[+8(2.07e-18)]_25_[-3(1.26e-19)] chr6:17939770-17939870 4.24e-79 [+3(1.26e-19)]_25_[-8(3.63e-19)]_13 chr6:42828131-42828231 3.55e-97 3_[+3(1.26e-19)]_25_[-9(1.58e-18)]_\ 10 chr5:150432372-150432472 1.59e-46 20_[-2(9.54e-16)]_20_[-6(7.81e-05)]_\ 6 chr1:38484730-38484830 5.39e-103 2_[+3(6.89e-20)]_16_[+10(3.63e-19)]_\ 20 chr2:120695345-120695445 1.51e-27 12_[+5(1.26e-19)]_57 chr7:2501219-2501319 1.00e-47 48_[-8(7.58e-17)]_21 chr2:135347289-135347389 1.17e-67 18_[-10(1.12e-17)]_16_\ [-3(4.12e-10)]_4 chr5:60656159-60656259 2.48e-103 9_[+8(3.63e-19)]_29_[+1(1.17e-17)] chr7:57541951-57542051 4.24e-53 14_[+8(2.40e-15)]_30_[+4(1.40e-13)]_\ 3 chr3:119798527-119798627 9.61e-01 100 chr6:27190816-27190916 6.91e-54 42_[+10(9.66e-19)]_27 chr1:148410043-148410143 2.68e-01 100 chr4:86913825-86913925 9.90e-01 100 chr5:44908345-44908445 9.86e-109 1_[-1(1.83e-19)]_29_[-8(1.69e-17)]_\ 8 chr1:35118443-35118543 1.58e-70 1_[-5(7.45e-09)]_30_[-9(1.58e-18)]_\ 7 chr3:146191742-146191842 4.06e-70 12_[+8(3.63e-19)]_33_[+4(4.47e-10)]_\ 2 chr6:134698922-134699022 2.58e-01 100 chr8:35158204-35158304 1.82e-71 3_[-4(5.32e-14)]_30_[-8(6.64e-19)]_\ 14 chr2:133268479-133268579 1.96e-102 10_[+8(6.64e-19)]_27_[+2(6.89e-20)]_\ 1 chr3:103451911-103452011 3.45e-62 17_[-2(2.41e-15)]_19_\ [+10(1.13e-11)]_2 chr5:169853854-169853954 4.30e-75 8_[-10(3.63e-19)]_20_[+1(1.42e-15)]_\ 10 chr7:55114876-55114976 7.24e-59 20_[+8(6.64e-19)]_49 chr1:241962802-241962902 2.27e-01 100 chr3:129376533-129376633 3.47e-01 100 chr1:151111411-151111511 1.55e-81 13_[+8(6.64e-19)]_25_[-3(2.14e-15)] chr7:5790427-5790527 2.92e-01 100 chr4:53502934-53503034 7.65e-01 100 chr6:115764853-115764953 1.67e-73 1_[-2(5.02e-10)]_19_[+10(2.17e-18)]_\ 18 chr2:116774065-116774165 6.28e-01 100 chr8:60974684-60974784 1.42e-02 77_[-4(2.27e-05)]_1 chr6:75274741-75274841 1.57e-114 1_[-1(6.89e-20)]_20_[+10(9.66e-19)]_\ 17 chr4:2985130-2985230 1.42e-91 5_[+3(1.03e-14)]_17_[+10(2.09e-16)]_\ 16 chr7:48596528-48596628 1.05e-73 1_[+3(2.98e-19)]_16_[+10(1.22e-17)]_\ 21 chr1:146582152-146582252 1.13e-01 100 chr8:66942530-66942630 4.49e-01 100 chr3:122154840-122154925 4.41e-06 54_[-5(1.56e-10)] chr4:60708806-60708877 9.87e-01 71 chr8:90205834-90205934 9.89e-01 100 chr7:102327703-102327803 8.55e-01 100 chr6:19422381-19422481 1.83e-60 35_[+10(3.63e-19)]_34 chr7:82608311-82608411 9.82e-23 6_[+5(1.83e-19)]_63 chr6:132079627-132079727 2.00e-88 4_[-4(5.32e-14)]_30_[+10(3.63e-19)]_\ 13 chr2:102310176-102310276 2.15e-42 39_[-7(9.47e-15)]_34 chr2:109241768-109241868 6.05e-01 100 chr2:65298642-65298742 2.04e-78 8_[+8(6.64e-19)]_34_[+4(1.03e-09)]_\ 5 chr4:31734037-31734137 6.26e-30 32_[-10(5.40e-15)]_37 chr1:219510196-219510296 2.35e-60 44_[-10(3.63e-19)]_25 chr2:127294786-127294886 2.42e-02 100 chr6:32652010-32652110 5.72e-95 4_[-2(2.95e-16)]_20_[+10(3.44e-18)]_\ 14 chr2:126681713-126681808 1.15e-12 51_[-5(1.90e-09)]_13 chr2:198074546-198074646 5.66e-11 67_[-5(1.12e-15)]_2 chr1:149856476-149856576 4.71e-45 24_[+8(3.55e-15)]_45 chr2:146072153-146072253 6.55e-01 100 chr6:20375102-20375202 1.10e-34 7_[+9(3.36e-09)]_36_[+4(5.32e-14)]_\ 4 chr1:216251442-216251542 3.33e-61 12_[+9(4.90e-18)]_26_[+2(1.44e-07)] chr7:63188828-63188928 1.83e-93 3_[-2(1.89e-14)]_30_[-8(3.63e-19)]_\ 5 chr4:78177087-78177187 1.85e-01 100 chr7:73003463-73003563 9.32e-01 100 chr1:9769760-9769860 3.26e-109 6_[+3(6.89e-20)]_16_[+10(7.43e-18)]_\ 16 chr1:233321013-233321113 8.77e-01 100 chr2:15600718-15600818 1.26e-27 18_[+5(1.83e-19)]_51 chr1:242475236-242475336 1.71e-60 7_[+10(3.63e-19)]_62 chr4:92292947-92293047 5.63e-59 46_[-8(6.64e-19)]_23 chr2:69998460-69998560 4.09e-94 [-2(6.18e-17)]_30_[-8(6.64e-19)]_8 chr8:68717353-68717453 4.27e-01 100 chr2:189121641-189121741 3.66e-04 69_[-5(7.02e-07)] chr3:39917924-39918024 2.44e-97 10_[+8(1.33e-18)]_25_[-3(1.26e-19)]_\ 3 chr8:53871394-53871494 4.92e-38 32_[+10(7.19e-14)]_37 chr5:174628518-174628618 5.22e-73 23_[-10(3.63e-19)]_21_\ [+4(5.32e-14)]_3 chr3:194415661-194415761 2.53e-15 [+5(6.89e-20)]_69 chr4:14637971-14638071 6.29e-96 5_[+8(2.07e-18)]_30_[+2(1.49e-15)]_\ 3 chr5:50747761-50747861 9.46e-35 62_[+9(6.93e-17)]_7 chr1:43837995-43838095 6.87e-01 100 chr6:150117075-150117175 2.53e-109 9_[-10(5.15e-17)]_20_[+1(6.89e-20)]_\ 9 chr6:101556321-101556421 4.71e-01 100 chr5:35594824-35594924 1.29e-20 7_[+5(6.89e-20)]_62 chr1:245642422-245642522 4.04e-01 100 chr7:72207496-72207576 9.83e-01 80 chr3:149675715-149675815 4.22e-90 10_[+8(3.63e-19)]_25_[-3(1.43e-18)]_\ 3 chr5:138383974-138384074 1.20e-70 1_[+3(2.14e-15)]_25_[-8(1.69e-17)]_\ 12 chr7:122960179-122960279 1.72e-114 8_[+8(2.07e-18)]_25_[-3(6.89e-20)]_\ 5 chr2:32308761-32308861 6.07e-103 [-1(6.21e-19)]_20_[+10(9.66e-19)]_\ 18 chr6:53088909-53089009 2.61e-01 100 chr2:241076809-241076909 9.37e-111 1_[-1(6.89e-20)]_29_[-8(1.33e-18)]_\ 8 chr2:59656115-59656215 9.27e-01 100 chr2:101357857-101357957 9.46e-01 100 chr5:6688680-6688780 6.03e-01 100 chr2:176019738-176019838 7.05e-01 100 chr1:121530711-121530811 5.50e-102 6_[+8(6.64e-19)]_30_[+2(2.58e-16)]_\ 2 chr2:194578646-194578746 1.62e-22 53_[-10(9.75e-11)]_16 chr5:62323334-62323434 1.39e-55 17_[-9(9.66e-19)]_52 chr6:153104754-153104847 7.34e-12 65_[-4(5.55e-08)]_6 chr8:80478982-80479082 6.13e-51 17_[-2(6.72e-16)]_24_[+7(1.90e-13)]_\ 1 chr4:40464618-40464718 4.51e-78 2_[-4(2.77e-13)]_25_[+10(3.63e-19)]_\ 20 chr1:108797743-108797843 2.62e-01 100 chr8:47900579-47900679 2.35e-114 3_[-1(6.89e-20)]_29_[-8(3.63e-19)]_\ 6 chr4:128209622-128209722 2.01e-02 69_[-5(1.15e-05)] chr1:35712449-35712549 8.03e-90 [-1(1.26e-19)]_22_[+7(4.04e-13)]_20 chr4:98223189-98223289 2.97e-51 28_[-10(9.66e-19)]_41 chr2:197598946-197599046 1.41e-85 20_[-10(1.27e-18)]_18_\ [+2(6.18e-17)] chr3:166536408-166536508 1.00e-58 3_[-4(2.12e-10)]_30_[-9(8.24e-18)]_\ 14 chr2:171091763-171091863 3.88e-89 8_[-10(3.92e-17)]_16_[-3(6.89e-20)]_\ 14 chr4:137409420-137409520 4.23e-02 1_[+5(1.19e-06)]_68 chr7:78168151-78168251 6.61e-01 100 chr7:95499865-95499965 9.03e-01 100 chr4:137001677-137001777 1.34e-113 5_[+8(6.64e-19)]_29_[+1(1.12e-18)]_\ 4 chr3:44562700-44562800 1.51e-87 1_[+3(1.26e-19)]_16_[+10(3.63e-19)]_\ 21 chr1:101896488-101896588 2.26e-55 23_[+9(1.58e-18)]_46 chr4:185100800-185100900 2.99e-72 10_[+8(1.27e-17)]_25_[-3(3.41e-11)]_\ 3 chr3:128659451-128659551 7.53e-116 2_[-1(1.83e-19)]_20_[+10(3.63e-19)]_\ 16 chr8:108919155-108919234 9.90e-01 79 chr4:95267949-95268049 6.11e-73 17_[-10(3.44e-18)]_16_\ [-3(3.00e-10)]_5 chr6:49254021-49254121 4.05e-01 100 chr6:9773569-9773669 1.25e-107 16_[-10(3.80e-18)]_18_\ [+2(6.89e-20)]_4 chr6:111525679-111525779 1.79e-96 2_[-2(4.82e-18)]_18_[+10(3.11e-17)]_\ 18 chr4:84195785-84195885 5.56e-01 100 chr8:112932525-112932625 5.76e-01 100 chr5:83016630-83016730 2.29e-87 22_[-10(3.63e-19)]_16_\ [-3(6.89e-20)] chr4:5468780-5468880 1.12e-103 1_[-1(7.42e-17)]_20_[+10(3.63e-19)]_\ 17 chr6:151266901-151267001 6.43e-01 100 chr4:162648155-162648255 7.67e-01 100 chr5:110021015-110021115 1.98e-74 12_[+8(6.64e-19)]_34_[+4(5.32e-14)]_\ 1 chr6:15688026-15688126 5.56e-118 18_[-10(3.63e-19)]_20_\ [+1(1.26e-19)] chr3:17682164-17682264 3.31e-16 18_[+10(1.01e-09)]_51 chr2:241258116-241258216 4.94e-54 27_[+10(1.87e-18)]_42 chr2:68304626-68304726 1.41e-01 100 chr1:76438152-76438252 3.10e-120 8_[+8(6.64e-19)]_27_[+2(6.89e-20)]_\ 3 chr6:124482852-124482952 5.42e-110 4_[-1(1.80e-17)]_20_[+10(3.63e-19)]_\ 14 chr1:46985193-46985293 2.95e-01 100 chr5:30056431-30056531 3.91e-60 [-4(2.00e-08)]_30_[-9(9.66e-19)]_17 chr4:132344429-132344529 7.65e-43 21_[-8(1.84e-15)]_48 chr1:54454656-54454756 5.93e-02 1_[+4(2.27e-05)]_77 chr1:44058707-44058773 9.84e-01 66 chr2:106813114-106813199 6.64e-16 [+5(8.48e-19)]_54 chr8:111107448-111107548 1.10e-01 100 chr6:156636265-156636365 2.84e-13 8_[+5(2.84e-15)]_61 chr4:133644823-133644923 7.35e-01 100 chr1:79100135-79100235 1.42e-110 8_[+9(2.41e-17)]_29_[+1(6.89e-20)]_\ 1 chr2:69396482-69396582 3.40e-43 8_[-8(8.16e-18)]_61 chr1:11706931-11707031 1.46e-108 3_[-2(6.89e-20)]_27_[-9(1.31e-17)]_\ 8 chr5:13497210-13497310 4.02e-01 100 chr7:88418418-88418518 2.92e-72 4_[+9(8.24e-18)]_43_[+4(3.33e-11)] chr2:233609005-233609105 2.76e-50 20_[-10(5.40e-15)]_16_\ [-3(2.14e-15)]_2 chr3:8826545-8826645 4.74e-17 6_[+5(9.58e-17)]_63 chr4:25618023-25618123 2.22e-58 50_[-8(3.63e-19)]_19 chr6:161897699-161897799 1.17e-89 2_[-1(3.57e-13)]_18_[+10(3.63e-19)]_\ 18 chr4:87010805-87010905 1.28e-61 2_[-4(2.03e-13)]_33_[-9(1.47e-15)]_\ 12 chr1:198977570-198977670 3.90e-28 69_[+8(1.33e-17)] chr2:121950364-121950464 1.50e-59 25_[-10(2.09e-17)]_21_\ [+4(5.22e-12)]_1 chr1:224972298-224972398 9.72e-01 100 chr3:31526664-31526764 5.25e-52 27_[+8(8.16e-18)]_42 chr1:35620595-35620695 8.66e-01 100 chr5:172808542-172808642 4.07e-02 100 chr4:8565117-8565217 7.73e-103 13_[-10(9.66e-19)]_20_\ [+1(6.89e-20)]_5 chr2:200286276-200286373 2.61e-13 65_[-5(1.71e-18)]_1 chr5:33464795-33464895 4.90e-70 4_[-4(1.28e-08)]_30_[-8(6.64e-19)]_\ 13 chr2:20833899-20833999 9.98e-01 100 chr4:167695130-167695230 1.43e-85 [+3(2.98e-19)]_25_[-8(6.64e-19)]_13 chr2:215200854-215200954 2.94e-72 2_[-4(5.32e-14)]_21_[+10(3.63e-19)]_\ 24 chr1:218135099-218135199 9.12e-01 100 chr1:38890034-38890134 1.05e-60 13_[+8(1.27e-17)]_29_[+4(1.71e-10)]_\ 5 chr1:64794128-64794228 5.13e-112 [-1(7.05e-18)]_20_[+10(3.63e-19)]_\ 18 chr2:174190854-174190954 1.80e-19 65_[-5(3.77e-18)]_4 chr3:165583554-165583654 2.66e-01 100 chr7:107147102-107147202 6.95e-59 35_[-8(6.64e-19)]_34 chr7:27593923-27594023 1.60e-01 100 chr5:176442559-176442640 1.28e-01 81 chr2:211508799-211508899 7.32e-01 100 chr5:178813802-178813902 6.49e-79 6_[-4(5.32e-14)]_40_[-9(4.90e-18)]_\ 1 chr7:78523348-78523448 3.87e-01 100 chr1:16962263-16962363 1.11e-83 1_[+3(2.93e-15)]_16_[+10(3.63e-19)]_\ 21 chr7:148955649-148955749 3.04e-62 15_[+9(1.92e-16)]_31_[+4(7.48e-14)]_\ 1 chr7:131013482-131013582 9.98e-01 100 chr3:167541956-167542045 4.15e-07 52_[-5(2.64e-10)]_6 chr6:4976268-4976368 6.86e-01 100 chr1:235169542-235169642 6.63e-01 100 chr4:122956623-122956720 3.76e-10 9_[+5(1.37e-13)]_57 chr2:120055481-120055581 3.10e-01 100 chr1:219352248-219352348 2.79e-83 12_[-2(6.89e-20)]_18_\ [+10(4.21e-13)]_8 chr2:70124689-70124789 1.44e-96 1_[-1(7.04e-19)]_20_[+10(7.41e-17)]_\ 17 chr2:20601770-20601870 4.52e-02 [+5(8.13e-06)]_69 chr5:135075278-135075362 7.13e-16 4_[+5(5.34e-17)]_49 chr5:78081300-78081400 2.55e-83 21_[-10(3.63e-19)]_16_\ [-3(2.14e-15)]_1 chr4:64057670-64057770 2.66e-01 55_[+10(2.90e-05)]_14 chr1:88664286-88664386 3.54e-87 17_[-10(3.11e-17)]_20_\ [+2(2.95e-16)]_1 chr7:51303278-51303378 5.43e-10 15_[+10(1.86e-08)]_54 chr4:175200459-175200559 8.33e-01 100 chr7:67759204-67759304 3.74e-82 21_[-10(3.63e-19)]_16_\ [-3(1.75e-14)]_1 chr3:113591587-113591687 7.61e-01 100 chr6:159238097-159238197 2.06e-114 9_[+8(6.64e-19)]_29_[+1(6.21e-19)] chr6:159979910-159980010 2.19e-92 9_[-2(5.89e-14)]_29_[-8(6.42e-18)] chr3:179564889-179564989 1.02e-20 51_[-10(7.01e-10)]_18 chr8:36136987-36137080 3.68e-02 61_[-5(3.52e-06)]_1 chr2:200335276-200335376 5.44e-01 100 chr6:131313566-131313666 4.91e-68 14_[+8(6.64e-19)]_30_[+4(5.22e-12)]_\ 3 chr5:3098303-3098403 6.01e-56 3_[-4(7.48e-14)]_22_[+10(2.09e-17)]_\ 22 chr6:118130394-118130494 2.08e-10 59_[-5(7.84e-12)]_10 chr4:187797263-187797363 4.28e-67 18_[-10(1.34e-15)]_15_\ [-3(9.23e-10)]_5 chr3:81342349-81342449 5.68e-66 [+3(1.77e-15)]_16_[+10(7.43e-18)]_\ 22 chr1:23991397-23991497 2.33e-102 19_[-10(3.63e-19)]_16_\ [-3(1.26e-19)]_3 chr1:93104874-93104974 2.75e-114 1_[-1(7.04e-19)]_20_[+10(3.63e-19)]_\ 17 chr5:4920126-4920226 1.00e-46 50_[-9(3.00e-16)]_19 chr7:1333013-1333113 8.50e-01 100 chr2:140640378-140640478 1.38e-54 18_[+8(2.07e-18)]_51 chr1:166389433-166389533 4.25e-13 68_[-5(5.00e-18)]_1 chr3:153312111-153312211 7.50e-02 66_[-10(8.23e-05)]_3 chr2:24931610-24931710 4.38e-78 13_[+8(6.64e-19)]_25_[-3(3.73e-13)] chr2:26996520-26996620 7.92e-122 3_[-2(6.89e-20)]_18_[+10(3.63e-19)]_\ 17 chr2:149580042-149580142 5.47e-58 17_[-7(5.39e-14)]_18_[-3(2.84e-12)]_\ 7 chr5:65895558-65895658 1.77e-107 1_[-1(7.42e-17)]_20_[+10(3.63e-19)]_\ 17 chr2:16108546-16108646 4.68e-01 100 chr6:108096365-108096465 2.30e-103 3_[+3(1.26e-19)]_16_[+10(3.63e-19)]_\ 19 chr4:151697779-151697879 6.57e-01 100 chr7:100338307-100338407 9.31e-01 100 chr1:45664050-45664150 2.88e-106 9_[+3(1.26e-19)]_25_[-9(1.74e-16)]_\ 4 chr1:36104525-36104625 9.95e-116 9_[-2(6.89e-20)]_27_[-8(1.27e-17)]_\ 2 chr1:108559287-108559387 4.76e-01 100 chr6:156288370-156288470 7.37e-14 69_[-5(1.83e-19)] chr2:64353807-64353907 1.40e-81 1_[-2(6.89e-20)]_18_[+10(8.09e-17)]_\ 19 chr2:41941478-41941578 4.92e-103 [-1(1.17e-17)]_20_[+10(3.63e-19)]_\ 18 chr7:10147710-10147810 5.70e-01 100 chr6:121409268-121409368 5.33e-57 8_[+8(1.62e-12)]_30_[+2(2.95e-16)] chr3:65784435-65784535 1.70e-73 3_[-4(5.32e-14)]_21_[+10(3.63e-19)]_\ 23 chr2:175734065-175734165 3.10e-08 27_[-9(1.70e-08)]_42 chr1:201306673-201306773 2.08e-76 6_[+8(3.63e-19)]_38_[+4(3.84e-12)]_\ 3 chr2:104339521-104339621 1.71e-94 16_[-10(3.63e-19)]_21_\ [+2(2.58e-16)]_1 chr6:103456321-103456421 9.60e-01 100 chr1:144924458-144924558 1.61e-78 4_[-4(7.48e-14)]_34_[-9(4.90e-18)]_\ 9 chr6:137362214-137362314 7.19e-93 1_[-2(2.95e-16)]_29_[-8(1.33e-18)]_\ 8 chr8:39781007-39781094 3.12e-16 3_[+5(1.60e-16)]_53 chr3:63398438-63398538 1.98e-44 13_[-4(6.53e-11)]_21_\ [+10(2.54e-13)]_13 chr8:114036840-114036940 1.39e-16 66_[-5(3.82e-17)]_3 chr3:82859835-82859935 4.15e-82 1_[-2(4.82e-18)]_18_[+10(1.16e-16)]_\ 19 chr5:98303374-98303474 5.11e-83 1_[-2(6.89e-20)]_18_[+10(2.29e-15)]_\ 19 chr2:7495616-7495716 1.68e-39 42_[-9(8.81e-16)]_27 chr1:224951644-224951744 5.57e-77 21_[-10(1.12e-17)]_17_\ [-3(6.89e-20)] chr2:124148213-124148313 9.27e-12 64_[-5(2.43e-12)]_5 chr4:183509448-183509548 5.80e-106 6_[+8(6.64e-19)]_29_[+2(2.95e-16)]_\ 3 chr8:73156906-73157003 3.82e-01 97 chr3:150833758-150833858 1.17e-15 53_[-7(2.61e-09)]_20 chr3:169820535-169820635 4.91e-14 [+5(6.89e-20)]_69 chr5:63759491-63759589 2.59e-25 8_[+5(3.46e-19)]_59 chr5:25908084-25908184 2.13e-01 100 chr2:35919714-35919814 2.16e-88 4_[+3(4.41e-18)]_24_[-9(2.50e-16)]_\ 10 chr2:34692785-34692885 2.87e-01 100 chr2:165832172-165832272 1.52e-12 69_[-5(6.26e-19)] chr5:97008662-97008762 1.28e-91 19_[-10(9.66e-19)]_18_\ [+2(4.82e-18)]_1 chr4:82630686-82630786 6.01e-01 100 chr1:19649969-19650069 8.13e-01 100 chr3:176444605-176444680 7.35e-60 39_[-8(6.64e-19)]_5 chr2:107936128-107936228 4.88e-48 3_[-4(2.77e-13)]_21_[+10(4.29e-15)]_\ 23 chr4:84797595-84797695 1.64e-90 9_[-10(3.63e-19)]_16_[-3(3.56e-13)]_\ 13 chr2:185089085-185089185 8.95e-10 11_[+5(3.04e-08)]_58 chr3:176928413-176928513 2.43e-01 100 chr7:31615749-31615849 4.71e-68 19_[-10(8.52e-18)]_16_\ [-3(2.86e-13)]_3 chr1:226399907-226400007 9.85e-01 100 chr2:91491856-91491956 3.17e-64 23_[-10(9.66e-19)]_21_\ [+4(5.32e-14)]_3 chr7:39617402-39617502 7.07e-01 100 chr3:64774946-64775046 2.69e-70 15_[+9(9.66e-19)]_30_[+4(5.32e-14)]_\ 2 chr7:1075608-1075708 1.63e-87 22_[-7(9.44e-17)]_18_[-3(1.26e-19)]_\ 2 chr6:160838502-160838602 9.85e-57 37_[+10(3.63e-19)]_32 chr5:76391210-76391310 1.00e-29 21_[-1(5.00e-14)]_48 chr2:102031669-102031769 2.87e-107 10_[-10(3.63e-19)]_20_\ [+2(2.95e-16)]_8 chr7:74118913-74119013 4.28e-115 [+9(1.72e-17)]_29_[+1(6.89e-20)]_9 chr4:97852962-97853062 2.91e-45 15_[+9(2.38e-14)]_32_[+4(1.28e-08)] chr7:75228799-75228899 7.66e-37 28_[+10(7.80e-15)]_1_\ [+10(8.98e-05)]_9 chr4:163349834-163349934 1.36e-101 3_[+3(1.26e-19)]_16_[+10(3.63e-19)]_\ 19 chr1:121263348-121263448 4.26e-19 66_[-5(2.41e-19)]_3 chr3:51989986-51990086 4.53e-52 25_[-10(1.87e-15)]_12_\ [-3(1.50e-11)]_1 chr1:65170094-65170194 1.35e-63 13_[-4(1.64e-12)]_27_\ [+10(3.63e-19)]_7 chr6:37032604-37032704 1.93e-83 10_[+8(6.64e-19)]_28_[+2(2.67e-15)] -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************