******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYa8.MemeChipResults/seqs-centered ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:1446703-1446719 1.0000 16 chr1:1446845-1446921 1.0000 76 chr1:1498565-1498581 1.0000 16 chr1:1498707-1498783 1.0000 76 chr1:6339739-6339890 1.0000 100 chr1:9774050-9774114 1.0000 64 chr1:23219836-23220146 1.0000 100 chr1:23869167-23869233 1.0000 66 chr1:33000000-33000040 1.0000 40 chr1:37497256-37497363 1.0000 100 chr1:74391957-74392094 1.0000 100 chr1:113842819-113843119 1.0000 100 chr1:145410314-145410612 1.0000 100 chr1:151910435-151910523 1.0000 88 chr1:171854491-171854565 1.0000 74 chr1:173186989-173187072 1.0000 83 chr1:173599126-173599240 1.0000 100 chr1:173986369-173986419 1.0000 50 chr1:201771159-201771255 1.0000 96 chr1:211811761-211811793 1.0000 32 chr1:211811793-211811867 1.0000 74 chr1:231968484-231968621 1.0000 100 chr1:244914291-244914406 1.0000 100 chr2:13623723-13623774 1.0000 51 chr2:15501584-15501684 1.0000 100 chr2:19952781-19952913 1.0000 100 chr2:28070546-28070678 1.0000 100 chr2:31804882-31804928 1.0000 46 chr2:40107195-40107304 1.0000 100 chr2:40995299-40995401 1.0000 100 chr2:59892887-59892992 1.0000 100 chr2:88567965-88568052 1.0000 87 chr2:114289902-114290036 1.0000 100 chr2:118148563-118148706 1.0000 100 chr2:120016659-120016722 1.0000 63 chr2:137581646-137581785 1.0000 100 chr2:142442290-142442400 1.0000 100 chr2:142870245-142870407 1.0000 100 chr2:186537559-186537693 1.0000 100 chr2:188165950-188166023 1.0000 73 chr2:195546375-195546451 1.0000 76 chr2:212562033-212562151 1.0000 100 chr2:220822890-220823010 1.0000 100 chr2:227768483-227768553 1.0000 70 chr2:232673731-232673816 1.0000 85 chr2:239933504-239933585 1.0000 81 chr3:12274439-12274554 1.0000 100 chr3:12527443-12527548 1.0000 100 chr3:34913100-34913400 1.0000 100 chr3:41107409-41107558 1.0000 100 chr3:46531151-46531238 1.0000 87 chr3:46544422-46544490 1.0000 68 chr3:53841451-53841505 1.0000 54 chr3:56132525-56132645 1.0000 100 chr3:57444269-57444338 1.0000 69 chr3:65955223-65955346 1.0000 100 chr3:74999893-75000000 1.0000 100 chr3:75065216-75065561 1.0000 100 chr3:85175919-85176050 1.0000 100 chr3:88050346-88050652 1.0000 100 chr3:110741298-110741582 1.0000 100 chr3:115305404-115305716 1.0000 100 chr3:120403854-120403950 1.0000 96 chr3:123580103-123580196 1.0000 93 chr3:126833773-126834081 1.0000 100 chr3:141782690-141782828 1.0000 100 chr3:159201627-159201752 1.0000 100 chr3:176034243-176034325 1.0000 82 chr3:188527749-188527877 1.0000 100 chr3:191232534-191232601 1.0000 67 chr3:198068107-198068206 1.0000 99 chr4:6845352-6845493 1.0000 100 chr4:33943216-33943310 1.0000 94 chr4:34266624-34266715 1.0000 91 chr4:40528794-40528949 1.0000 100 chr4:42619049-42619159 1.0000 100 chr4:54616269-54616579 1.0000 100 chr4:69752231-69752302 1.0000 71 chr4:83838487-83838560 1.0000 73 chr4:105448936-105449263 1.0000 100 chr4:109418181-109418318 1.0000 100 chr4:125553522-125553826 1.0000 100 chr4:125857533-125857630 1.0000 97 chr4:147922407-147922708 1.0000 100 chr4:150724765-150724860 1.0000 95 chr4:154968184-154968488 1.0000 100 chr4:156891185-156891309 1.0000 100 chr4:166490888-166490987 1.0000 99 chr4:170659942-170660000 1.0000 58 chr4:177492573-177492676 1.0000 100 chr4:180997022-180997338 1.0000 100 chr5:10005167-10005466 1.0000 100 chr5:11493047-11493113 1.0000 66 chr5:22954352-22954436 1.0000 84 chr5:26600616-26600726 1.0000 100 chr5:27225859-27225999 1.0000 100 chr5:50573252-50573555 1.0000 100 chr5:50877480-50877785 1.0000 100 chr5:72620731-72621025 1.0000 100 chr5:79717884-79718186 1.0000 100 chr5:129042999-129043299 1.0000 100 chr5:136913412-136913719 1.0000 100 chr5:142201948-142202174 1.0000 100 chr5:149021884-149022031 1.0000 100 chr5:150583044-150583143 1.0000 99 chr5:150933093-150933198 1.0000 100 chr5:167426326-167426384 1.0000 58 chr5:170731817-170731902 1.0000 85 chr5:174998771-174998907 1.0000 100 chr5:179549585-179549868 1.0000 100 chr6:151650294-151650432 1.0000 100 chr6:7266622-7266700 1.0000 78 chr6:9014599-9014695 1.0000 96 chr6:12099183-12099465 1.0000 100 chr6:29396131-29396263 1.0000 100 chr6:33371999-33372058 1.0000 59 chr6:43592878-43593019 1.0000 100 chr6:76544585-76544717 1.0000 100 chr6:88152107-88152240 1.0000 100 chr6:97748554-97748663 1.0000 100 chr6:99570037-99570109 1.0000 72 chr6:105582204-105582285 1.0000 81 chr6:110424433-110424570 1.0000 100 chr6:151779814-151779917 1.0000 100 chr6:151780369-151780382 1.0000 13 chr6:159844267-159844333 1.0000 66 chr7:3295314-3295394 1.0000 80 chr7:6325356-6325456 1.0000 100 chr7:12035087-12035156 1.0000 69 chr7:18938173-18938254 1.0000 81 chr7:40248578-40248640 1.0000 62 chr7:50189188-50189286 1.0000 98 chr7:50189312-50189323 1.0000 11 chr7:56981467-56981591 1.0000 100 chr7:57632341-57632401 1.0000 60 chr7:57833137-57833197 1.0000 60 chr7:63595365-63595488 1.0000 100 chr7:65847313-65847623 1.0000 100 chr7:66553240-66553303 1.0000 63 chr7:68865517-68865590 1.0000 73 chr7:88736500-88736641 1.0000 100 chr7:95183872-95183940 1.0000 68 chr7:99059117-99059397 1.0000 100 chr7:101302231-101302325 1.0000 94 chr7:103078654-103078732 1.0000 78 chr7:107797740-107797807 1.0000 67 chr7:113538585-113538894 1.0000 100 chr7:123113980-123114107 1.0000 100 chr7:151478937-151478997 1.0000 60 chr8:4164746-4164891 1.0000 100 chr8:4241697-4241840 1.0000 100 chr8:12911843-12911955 1.0000 100 chr8:33482680-33482777 1.0000 97 chr8:38120425-38120494 1.0000 69 chr8:40903481-40903538 1.0000 57 chr8:46441903-46441995 1.0000 92 chr8:77725276-77725367 1.0000 91 chr8:91388271-91388374 1.0000 100 chr8:125333505-125333812 1.0000 100 chr8:144607186-144607259 1.0000 73 chr9:5118095-5118175 1.0000 80 chr9:6429412-6429480 1.0000 68 chr9:14225342-14225486 1.0000 100 chr9:38095864-38096172 1.0000 100 chr9:38978856-38978977 1.0000 100 chr9:41801900-41802022 1.0000 100 chr9:42452954-42453256 1.0000 100 chr9:67384950-67385071 1.0000 100 chr9:78256524-78256664 1.0000 100 chr9:86928049-86928140 1.0000 91 chr9:87132418-87132725 1.0000 100 chr9:94201876-94201945 1.0000 69 chr9:118819636-118819726 1.0000 90 chr9:135936085-135936203 1.0000 100 chr9:137992728-137992814 1.0000 86 chrX:2440520-2440596 1.0000 76 chrX:7246262-7246318 1.0000 56 chrX:7246605-7246641 1.0000 36 chrX:21092030-21092108 1.0000 78 chrX:48381540-48381639 1.0000 99 chrX:48413786-48413885 1.0000 99 chrX:71014195-71014224 1.0000 29 chrX:99826014-99826137 1.0000 100 chrX:105542663-105542675 1.0000 12 chrX:105542742-105542839 1.0000 97 chrX:119994220-119994305 1.0000 85 chrX:129976048-129976195 1.0000 100 chrX:153022090-153022227 1.0000 100 chrY:2440520-2440596 1.0000 76 chrY:3936640-3936720 1.0000 80 chrY:7017211-7017275 1.0000 64 chrY:8798682-8798778 1.0000 96 chrY:10631330-10631394 1.0000 64 chrY:10649762-10649826 1.0000 64 chrY:10652496-10652545 1.0000 49 chrY:10668806-10668855 1.0000 49 chrY:10669594-10669643 1.0000 49 chrY:10677042-10677111 1.0000 69 chrY:10779489-10779561 1.0000 72 chrY:10852146-10852206 1.0000 60 chrY:10879951-10880000 1.0000 49 chrY:10899770-10899837 1.0000 67 chrY:10900026-10900090 1.0000 64 chrY:10969544-10969612 1.0000 68 chrY:10972474-10972528 1.0000 54 chrY:10979699-10979767 1.0000 68 chrY:10992883-10992951 1.0000 68 chrY:10994004-10994072 1.0000 68 chrY:11004663-11004730 1.0000 67 chrY:11005578-11005647 1.0000 69 chrY:11032208-11032271 1.0000 63 chrY:11294512-11294580 1.0000 68 chrY:15091441-15091750 1.0000 100 chrY:16847094-16847361 1.0000 100 chrY:22244247-22244370 1.0000 100 chr10:7499879-7500000 1.0000 100 chr10:18112616-18112671 1.0000 55 chr10:29407123-29407216 1.0000 93 chr10:58719507-58719633 1.0000 100 chr10:68874582-68874685 1.0000 100 chr10:72143375-72143497 1.0000 100 chr10:74430997-74431091 1.0000 94 chr10:80314191-80314300 1.0000 100 chr10:95679583-95679889 1.0000 100 chr10:96731316-96731453 1.0000 100 chr10:102664769-10266485 1.0000 88 chr10:102753184-10275323 1.0000 50 chr10:117007497-11700758 1.0000 83 chr11:19449316-19449411 1.0000 95 chr11:20407758-20407788 1.0000 30 chr11:38237205-38237328 1.0000 100 chr11:41866190-41866320 1.0000 100 chr11:61159648-61159738 1.0000 90 chr11:61251690-61251760 1.0000 70 chr11:62122843-62122922 1.0000 79 chr11:71951452-71951485 1.0000 33 chr11:74090355-74090397 1.0000 42 chr11:78382368-78382460 1.0000 92 chr11:82308029-82308334 1.0000 100 chr11:94503762-94503849 1.0000 87 chr11:98293904-98294030 1.0000 100 chr11:107369919-10736997 1.0000 55 chr11:111842949-11184308 1.0000 100 chr11:112726134-11272623 1.0000 100 chr11:113239499-11323961 1.0000 100 chr11:127933915-12793406 1.0000 100 chr11:133433157-13343327 1.0000 100 chr12:5701091-5701170 1.0000 79 chr12:12219067-12219133 1.0000 66 chr12:12864714-12865016 1.0000 100 chr12:26909472-26909564 1.0000 92 chr12:34211977-34212058 1.0000 81 chr12:55720833-55720908 1.0000 75 chr12:56145973-56146091 1.0000 100 chr12:74005132-74005200 1.0000 68 chr12:78256316-78256447 1.0000 100 chr12:79496876-79496966 1.0000 90 chr12:80818146-80818251 1.0000 100 chr12:108075432-10807549 1.0000 62 chr12:116051249-11605130 1.0000 58 chr12:127172244-12717231 1.0000 72 chr13:20734568-20734723 1.0000 100 chr13:66609946-66610081 1.0000 100 chr13:78849847-78850156 1.0000 100 chr13:95346471-95346578 1.0000 100 chr14:32081424-32081571 1.0000 100 chr14:49491734-49491876 1.0000 100 chr14:55605291-55605343 1.0000 52 chr14:57632709-57632776 1.0000 67 chr14:63320465-63320774 1.0000 100 chr14:63612329-63612406 1.0000 77 chr14:67150160-67150470 1.0000 100 chr14:100953643-10095372 1.0000 77 chr14:102316467-10231654 1.0000 74 chr15:18979713-18979842 1.0000 100 chr15:23450369-23450473 1.0000 100 chr15:33249309-33249446 1.0000 100 chr15:39868931-39869019 1.0000 88 chr15:41246650-41246709 1.0000 59 chr15:45277857-45277989 1.0000 100 chr15:50706109-50706417 1.0000 100 chr15:57715321-57715416 1.0000 95 chr15:69240229-69240313 1.0000 84 chr15:72443997-72444109 1.0000 100 chr15:92839132-92839211 1.0000 79 chr16:4121202-4121294 1.0000 92 chr16:6942222-6942291 1.0000 69 chr16:11392741-11392841 1.0000 100 chr16:11393153-11393293 1.0000 100 chr16:14367797-14368099 1.0000 100 chr16:22768750-22768843 1.0000 93 chr16:33726662-33726781 1.0000 100 chr16:34062725-34062789 1.0000 64 chr16:34071216-34071277 1.0000 61 chr16:36669301-36669387 1.0000 86 chr16:49002177-49002284 1.0000 100 chr16:52968181-52968260 1.0000 79 chr16:59272944-59273048 1.0000 100 chr16:84848873-84849007 1.0000 100 chr16:88801921-88801981 1.0000 60 chr16:89250746-89250874 1.0000 100 chr17:2428447-2428557 1.0000 100 chr17:7493921-7493984 1.0000 63 chr17:11999926-12000000 1.0000 74 chr17:26690618-26690723 1.0000 100 chr17:28208166-28208467 1.0000 100 chr17:38950380-38950450 1.0000 70 chr17:80285977-80286043 1.0000 66 chr17:81975759-81975893 1.0000 100 chr18:9134754-9134840 1.0000 86 chr18:24155488-24155617 1.0000 100 chr18:27014348-27014483 1.0000 100 chr18:32752778-32752875 1.0000 97 chr18:67506062-67506178 1.0000 100 chr18:71893636-71893731 1.0000 95 chr19:671532-671594 1.0000 62 chr19:7064951-7065038 1.0000 87 chr19:9411951-9412023 1.0000 72 chr19:20929104-20929163 1.0000 59 chr19:30202566-30202642 1.0000 76 chr19:34154020-34154096 1.0000 76 chr19:35747214-35747303 1.0000 89 chr19:36601947-36602042 1.0000 95 chr19:38243056-38243146 1.0000 90 chr19:39543119-39543186 1.0000 67 chr19:39608742-39609041 1.0000 100 chr19:41501337-41501438 1.0000 100 chr19:45802816-45802934 1.0000 100 chr19:46889681-46889771 1.0000 90 chr19:49916345-49916448 1.0000 100 chr20:5620581-5620720 1.0000 100 chr20:9103026-9103132 1.0000 100 chr20:21639806-21639905 1.0000 99 chr20:25777376-25777441 1.0000 65 chr20:26078445-26078511 1.0000 66 chr20:28889642-28889706 1.0000 64 chr20:35620409-35620508 1.0000 99 chr20:37368513-37368849 1.0000 100 chr20:37458444-37458584 1.0000 100 chr20:39709002-39709117 1.0000 100 chr20:50694655-50694722 1.0000 67 chr21:9246373-9246462 1.0000 89 chr21:9582487-9582558 1.0000 71 chr21:14191097-14191398 1.0000 100 chr21:40585323-40585449 1.0000 100 chr22:22794121-22794256 1.0000 100 chr22:28385994-28386304 1.0000 100 chr22:34799179-34799292 1.0000 100 chr22:36389838-36390147 1.0000 100 chr22:47999415-47999472 1.0000 57 chr22:48312600-48312710 1.0000 100 chr22:50647065-50647135 1.0000 70 chrUn_KI270750v1:85959-8 1.0000 71 chr3_KI270784v1_alt:1637 1.0000 99 chr6_GL000251v2_alt:4783 1.0000 59 chr6_GL000252v2_alt:9782 1.0000 100 chr6_GL000253v2_alt:9777 1.0000 100 chr6_GL000253v2_alt:2911 1.0000 56 chr6_GL000254v2_alt:4807 1.0000 59 chr6_GL000255v2_alt:9781 1.0000 100 chr6_GL000255v2_alt:4566 1.0000 59 chr6_KI270800v1_alt:7713 1.0000 79 chr18_GL383571v1_alt:151 1.0000 100 chr19_GL383573v1_alt:272 1.0000 59 chr19_GL383574v1_alt:176 1.0000 76 chr19_KI270867v1_alt:188 1.0000 100 chr4_GL000008v2_random:2 1.0000 56 chr16_KI270728v1_random: 1.0000 91 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYa8.MemeChipResults/seqs-centered -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYa8.MemeChipResults/meme_out -mod anr -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYa8.MemeChipResults/background -dna -revcomp -nostatus model: mod= anr nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 31312 N= 368 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.238 C 0.262 G 0.262 T 0.238 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluYa8.MemeChipResults/background): A 0.238 C 0.262 G 0.262 T 0.238 ******************************************************************************** ******************************************************************************** MOTIF CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 width = 31 sites = 50 llr = 1869 E-value = 1.6e-564 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::::::::2a22aaaa32a2aaaaaa2a222 pos.-specific C 8aa::a:a::8:::::7::8:::::::::88 probability G :::a::::::::::::::::::::::::8:: matrix T 2:::a:a:8::8:::::8::::::::8:::: bits 2.1 * * * **** * * *** * 1.9 ******* * **** * ****** * 1.7 ******* * **** * ****** * 1.5 ********* ***** ** ******** Relative 1.2 ***************************** Entropy 1.0 ******************************* (53.9 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CCCGTCTCTACTAAAACTACAAAAAATAGCC consensus T A AA A A A AAA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr22:36389838-36390147 + 2 1.49e-19 c cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr22:28385994-28386304 + 2 1.49e-19 c cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr21:14191097-14191398 + 6 1.49e-19 gaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr19:39608742-39609041 + 8 1.49e-19 gtgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr17:28208166-28208467 + 7 1.49e-19 tgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr16:14367797-14368099 + 6 1.49e-19 gaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr15:50706109-50706417 + 3 1.49e-19 ac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr14:67150160-67150470 + 2 1.49e-19 c cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr14:63320465-63320774 + 3 1.49e-19 ac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr12:12864714-12865016 + 6 1.49e-19 gaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr11:82308029-82308334 + 5 1.49e-19 aaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr10:95679583-95679889 - 67 1.49e-19 AAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chrY:15091441-15091750 - 69 1.49e-19 C CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr9:87132418-87132725 + 4 1.49e-19 aac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr9:42452954-42453256 + 6 1.49e-19 gaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr9:38095864-38096172 + 3 1.49e-19 ac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr8:125333505-125333812 - 68 1.49e-19 AC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr7:113538585-113538894 + 3 1.49e-19 ac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr7:99059117-99059397 + 17 1.49e-19 acggtgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr7:65847313-65847623 - 69 1.49e-19 C CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr6:12099183-12099465 - 55 1.49e-19 ACGGTGAAAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr5:79717884-79718186 - 65 1.49e-19 GAAAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr5:72620731-72621025 - 70 1.49e-19 . CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr5:50877480-50877785 - 67 1.49e-19 AAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr5:50573252-50573555 + 6 1.49e-19 gaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr5:10005167-10005466 + 7 1.49e-19 tgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr4:154968184-154968488 - 66 1.49e-19 AAAC CCCGTCTCTACTAAAACTACAAAAAATAGCC AGGCGTAGTG chr4:147922407-147922708 + 7 1.49e-19 tgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr4:125553522-125553826 + 5 1.49e-19 aaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr4:54616269-54616579 + 2 1.49e-19 c cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr3:126833773-126834081 + 3 1.49e-19 ac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr3:88050346-88050652 - 67 1.49e-19 AAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr3:34913100-34913400 + 7 1.49e-19 tgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr1:145410314-145410612 - 63 1.49e-19 GTGAAAC CCCGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr1:113842819-113843119 + 7 1.49e-19 tgaaac cccgtctctactaaaactacaaaaaatagcc gggcgtagtg chr13:78849847-78850156 + 3 2.85e-19 ac cccgtctctactaaaaatacaaaaaatagcc gggcgtagtg chr5:136913412-136913719 - 68 2.85e-19 AC CCCGTCTCTACTAAAAATACAAAAAATAGCC GGGTGTAGTG chr1:23219836-23220146 + 2 2.85e-19 c cccgtctctactaaaaatacaaaaaatagcc gggcgtagtg chr5:129042999-129043299 - 64 1.57e-17 TGAAAC CCTGTCTCTACTAAAACTACAAAAAATAGCC GGGCGTAGTG chr4:180997022-180997338 + 1 2.03e-16 . cccgtctctactaaaactacaaaaaaaaaat agccgggcgt chr18:32752778-32752875 - 1 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA chr18:9134754-9134840 - 1 4.22e-15 ACAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA chr11:112726134-11272623 - 6 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA AAAAA chr11:62122843-62122922 - 5 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA AGAA chrY:8798682-8798778 - 3 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA AA chr5:149021884-149022031 - 2 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA A chr2:59892887-59892992 - 3 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA AA chr2:15501584-15501684 - 1 4.22e-15 AGAGCGAGAC TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA chrX:21092030-21092108 + 41 9.95e-15 agagcgagac tccgtctcaaaaaaaaaaaaataaaataaaa aaataaa chr11:61159648-61159738 + 58 1.00e-13 agagcgagac tccgtctcaaaaaaaaataaataaataaata aa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:36389838-36390147 1.5e-19 1_[+1]_68 chr22:28385994-28386304 1.5e-19 1_[+1]_68 chr21:14191097-14191398 1.5e-19 5_[+1]_64 chr19:39608742-39609041 1.5e-19 7_[+1]_62 chr17:28208166-28208467 1.5e-19 6_[+1]_63 chr16:14367797-14368099 1.5e-19 5_[+1]_64 chr15:50706109-50706417 1.5e-19 2_[+1]_67 chr14:67150160-67150470 1.5e-19 1_[+1]_68 chr14:63320465-63320774 1.5e-19 2_[+1]_67 chr12:12864714-12865016 1.5e-19 5_[+1]_64 chr11:82308029-82308334 1.5e-19 4_[+1]_65 chr10:95679583-95679889 1.5e-19 66_[-1]_3 chrY:15091441-15091750 1.5e-19 68_[-1]_1 chr9:87132418-87132725 1.5e-19 3_[+1]_66 chr9:42452954-42453256 1.5e-19 5_[+1]_64 chr9:38095864-38096172 1.5e-19 2_[+1]_67 chr8:125333505-125333812 1.5e-19 67_[-1]_2 chr7:113538585-113538894 1.5e-19 2_[+1]_67 chr7:99059117-99059397 1.5e-19 16_[+1]_53 chr7:65847313-65847623 1.5e-19 68_[-1]_1 chr6:12099183-12099465 1.5e-19 54_[-1]_15 chr5:79717884-79718186 1.5e-19 64_[-1]_5 chr5:72620731-72621025 1.5e-19 69_[-1] chr5:50877480-50877785 1.5e-19 66_[-1]_3 chr5:50573252-50573555 1.5e-19 5_[+1]_64 chr5:10005167-10005466 1.5e-19 6_[+1]_63 chr4:154968184-154968488 1.5e-19 65_[-1]_4 chr4:147922407-147922708 1.5e-19 6_[+1]_63 chr4:125553522-125553826 1.5e-19 4_[+1]_65 chr4:54616269-54616579 1.5e-19 1_[+1]_68 chr3:126833773-126834081 1.5e-19 2_[+1]_67 chr3:88050346-88050652 1.5e-19 66_[-1]_3 chr3:34913100-34913400 1.5e-19 6_[+1]_63 chr1:145410314-145410612 1.5e-19 62_[-1]_7 chr1:113842819-113843119 1.5e-19 6_[+1]_63 chr13:78849847-78850156 2.9e-19 2_[+1]_67 chr5:136913412-136913719 2.9e-19 67_[-1]_2 chr1:23219836-23220146 2.9e-19 1_[+1]_68 chr5:129042999-129043299 1.6e-17 63_[-1]_6 chr4:180997022-180997338 2e-16 [+1]_69 chr18:32752778-32752875 4.2e-15 [-1]_66 chr18:9134754-9134840 4.2e-15 [-1]_55 chr11:112726134-11272623 4.2e-15 5_[-1]_64 chr11:62122843-62122922 4.2e-15 4_[-1]_44 chrY:8798682-8798778 4.2e-15 2_[-1]_63 chr5:149021884-149022031 4.2e-15 1_[-1]_68 chr2:59892887-59892992 4.2e-15 2_[-1]_67 chr2:15501584-15501684 4.2e-15 [-1]_69 chrX:21092030-21092108 9.9e-15 40_[+1]_7 chr11:61159648-61159738 1e-13 57_[+1]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGTCTCTACTAAAACTACAAAAAATAGCC width=31 seqs=50 chr22:36389838-36390147 ( 2) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr22:28385994-28386304 ( 2) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr21:14191097-14191398 ( 6) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr19:39608742-39609041 ( 8) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr17:28208166-28208467 ( 7) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr16:14367797-14368099 ( 6) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr15:50706109-50706417 ( 3) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr14:67150160-67150470 ( 2) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr14:63320465-63320774 ( 3) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr12:12864714-12865016 ( 6) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr11:82308029-82308334 ( 5) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr10:95679583-95679889 ( 67) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chrY:15091441-15091750 ( 69) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr9:87132418-87132725 ( 4) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr9:42452954-42453256 ( 6) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr9:38095864-38096172 ( 3) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr8:125333505-125333812 ( 68) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr7:113538585-113538894 ( 3) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr7:99059117-99059397 ( 17) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr7:65847313-65847623 ( 69) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr6:12099183-12099465 ( 55) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr5:79717884-79718186 ( 65) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr5:72620731-72621025 ( 70) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr5:50877480-50877785 ( 67) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr5:50573252-50573555 ( 6) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr5:10005167-10005466 ( 7) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr4:154968184-154968488 ( 66) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr4:147922407-147922708 ( 7) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr4:125553522-125553826 ( 5) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr4:54616269-54616579 ( 2) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr3:126833773-126834081 ( 3) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr3:88050346-88050652 ( 67) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr3:34913100-34913400 ( 7) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr1:145410314-145410612 ( 63) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr1:113842819-113843119 ( 7) CCCGTCTCTACTAAAACTACAAAAAATAGCC 1 chr13:78849847-78850156 ( 3) CCCGTCTCTACTAAAAATACAAAAAATAGCC 1 chr5:136913412-136913719 ( 68) CCCGTCTCTACTAAAAATACAAAAAATAGCC 1 chr1:23219836-23220146 ( 2) CCCGTCTCTACTAAAAATACAAAAAATAGCC 1 chr5:129042999-129043299 ( 64) CCTGTCTCTACTAAAACTACAAAAAATAGCC 1 chr4:180997022-180997338 ( 1) CCCGTCTCTACTAAAACTACAAAAAAAAAAT 1 chr18:32752778-32752875 ( 1) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr18:9134754-9134840 ( 1) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr11:112726134-11272623 ( 6) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr11:62122843-62122922 ( 5) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chrY:8798682-8798778 ( 3) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr5:149021884-149022031 ( 2) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr2:59892887-59892992 ( 3) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chr2:15501584-15501684 ( 1) TCCGTCTCAAAAAAAAAAAAAAAAAAAAAAA 1 chrX:21092030-21092108 ( 41) TCCGTCTCAAAAAAAAAAAAATAAAATAAAA 1 chr11:61159648-61159738 ( 58) TCCGTCTCAAAAAAAAATAAATAAATAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 20272 bayes= 9.79462 E= 1.6e-564 -1229 161 -1229 -25 -1229 193 -1229 -1229 -1229 190 -1229 -357 -1229 -1229 193 -1229 -1229 -1229 -1229 207 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 193 -1229 -1229 -25 -1229 -1229 175 207 -1229 -1229 -1229 -25 161 -1229 -1229 -25 -1229 -1229 175 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 13 150 -1229 -1229 -40 -1229 -1229 179 207 -1229 -1229 -1229 -25 161 -1229 -1229 207 -1229 -1229 -1229 201 -1229 -1229 -257 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 204 -1229 -1229 -357 -25 -1229 -1229 175 207 -1229 -1229 -1229 -11 -1229 157 -1229 -25 157 -1229 -357 -25 157 -1229 -357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 1.6e-564 0.000000 0.800000 0.000000 0.200000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 0.200000 0.000000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.260000 0.740000 0.000000 0.000000 0.180000 0.000000 0.000000 0.820000 1.000000 0.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 0.200000 0.000000 0.000000 0.800000 1.000000 0.000000 0.000000 0.000000 0.220000 0.000000 0.780000 0.000000 0.200000 0.780000 0.000000 0.020000 0.200000 0.780000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGTCTCTACTAAAACTACAAAAAATAGCC MEME-1 regular expression -------------------------------------------------------------------------------- [CT]CCGTCTC[TA]A[CA][TA]AAAA[CA]TA[CA]AAAAAA[TA]A[GA][CA][CA] -------------------------------------------------------------------------------- Time 265.06 secs. ******************************************************************************** ******************************************************************************** MOTIF GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 width = 31 sites = 50 llr = 2038 E-value = 1.0e-638 ******************************************************************************** -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a::::1::::aaaaaaaa9aaaa9a9aa9a pos.-specific C ::a:99::9:a:::::::::::::::::::: probability G a:::::9:::::::::::::::::::::::: matrix T :::a11:a:a:::::::::1::::1:::::: bits 2.1 * * ******* *** 1.9 *** * ********** **** * ** * 1.7 ***** ************************* 1.5 ******************************* Relative 1.2 ******************************* Entropy 1.0 ******************************* (58.8 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19_KI270867v1_alt:188 + 66 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaa chr6_KI270800v1_alt:7713 + 49 9.25e-20 gacagagcaa gactccgtctcaaaaaaaaaaaaaaaaaaaa chr3_KI270784v1_alt:1637 + 67 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aa chr20:39709002-39709117 + 68 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aa chr19:46889681-46889771 + 59 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa a chr19:41501337-41501438 - 6 9.25e-20 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA AAAAA chr17:2428447-2428557 + 65 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaa chr16:59272944-59273048 + 69 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa a chr16:49002177-49002284 + 64 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaa chr15:69240229-69240313 + 44 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaagaa chr15:23450369-23450473 - 6 9.25e-20 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA AAGAA chr14:100953643-10095372 + 37 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaaaaa chr12:56145973-56146091 + 69 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa a chr11:94503762-94503849 + 54 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaa chr10:74430997-74431091 + 59 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaa chr10:68874582-68874685 + 67 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaa chr9:118819636-118819726 + 52 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaagaaa chr7:18938173-18938254 + 47 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaa chr7:3295314-3295394 + 40 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaaaaa chr6:9014599-9014695 + 56 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaaaaa chr5:170731817-170731902 + 45 9.25e-20 cacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaaaaa chr5:150933093-150933198 + 69 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa a chr5:26600616-26600726 - 3 9.25e-20 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA AA chr4:166490888-166490987 - 3 9.25e-20 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA AA chr4:34266624-34266715 + 57 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa gaaa chr3:198068107-198068206 - 3 9.25e-20 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA AA chr3:120403854-120403950 + 56 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aaaacaaaaa chr2:212562033-212562151 + 69 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa a chr2:40107195-40107304 + 70 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa chr1:244914291-244914406 + 68 9.25e-20 gacagagcga gactccgtctcaaaaaaaaaaaaaaaaaaaa aa chr16:52968181-52968260 - 11 1.76e-19 GACACAGCGA GACTCTGTCTCAAAAAAAAAAAAAAAAAAAA AAAGAGAAAA chr12:55720833-55720908 + 40 3.44e-19 gacagagtga gactccatctcaaaaaaaaaaaaaaaaaaaa aaaga chr12:5701091-5701170 - 1 3.44e-19 GACAGAGTGA GACTTCGTCTCAAAAAAAAAAAAAAAAAAAA chr10:117007497-11700758 + 47 3.44e-19 gacagagtga gactccatctcaaaaaaaaaaaaaaaaaaaa aaaaaa chr6:105582204-105582285 + 42 3.44e-19 aacagagcga gacttcgtctcaaaaaaaaaaaaaaaaaaaa aaaagaaaa chr18_GL383571v1_alt:151 + 68 6.13e-19 gacagagcga gactccgtttcaaaaaaaaaaaaaaaaaaaa aa chr18:67506062-67506178 + 68 6.13e-19 gacagagcga gactccgtttcaaaaaaaaaaaaaaaaaaaa aa chr12:74005132-74005200 + 38 7.90e-19 gaaacagcaa aactccgtctcaaaaaaaaaaaaaaaaaaaa chrY:3936640-3936720 + 41 7.90e-19 gacagagcga aactccgtctcaaaaaaaaaaaaaaaaaaaa aaaaaaaaa chr20:21639806-21639905 + 59 9.66e-19 gacagagcga gactccgtatcaaaaaaaaaaaaaaaaaaaa aaaaaaaaaa chr3:12527443-12527548 - 7 1.83e-18 GACAGAGCGA GACTCCGTCTCAAAAAAAAAAAAAAAGAAAA AAAAAA chr19:35747214-35747303 - 11 5.20e-18 GACAGAGCAA GACTCTGTCTCAAAAAAAAAAAAAAAAAAGA AAAAAGAAAA chr6:7266622-7266700 - 2 5.57e-18 GACAGAGCAA GACTCTGTCTCAAAAAAAAAAAAAAAAAGAA A chr12:26909472-26909564 - 3 8.14e-18 GACAGAGTAA GACTCCATCTCTAAAAAAAAAAAAAAAAAAA AA chr7:103078654-103078732 - 11 2.26e-17 AACAGAGCAA GACTCCGTCTCAAAAAAAAACAAAAACAAAA CAAACAAAAA chr8:144607186-144607259 + 39 2.65e-17 gacagagcga gacattgtctcaaaaaaaaaaaaaaaaaaaa aaaa chr19_GL383574v1_alt:176 + 44 1.63e-16 aacagagcga gtctccgtctcaaaaaaaataaaataaaata aa chr19:34154020-34154096 + 44 1.63e-16 aacagagcga gtctccgtctcaaaaaaaataaaataaaata aa chr3:57444269-57444338 - 3 2.11e-16 CACAGAGCAA GACTCTGTCTCAAAAAAAATAAAAATTAAAA AA chr11:78382368-78382460 - 9 2.26e-16 GACAGAGCGA GACTCTGTCTCAAAAAAAAAAAAATAATAAT AAAAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19_KI270867v1_alt:188 9.2e-20 65_[+2]_4 chr6_KI270800v1_alt:7713 9.2e-20 48_[+2] chr3_KI270784v1_alt:1637 9.2e-20 66_[+2]_2 chr20:39709002-39709117 9.2e-20 67_[+2]_2 chr19:46889681-46889771 9.2e-20 58_[+2]_1 chr19:41501337-41501438 9.2e-20 5_[-2]_64 chr17:2428447-2428557 9.2e-20 64_[+2]_5 chr16:59272944-59273048 9.2e-20 68_[+2]_1 chr16:49002177-49002284 9.2e-20 63_[+2]_6 chr15:69240229-69240313 9.2e-20 43_[+2]_10 chr15:23450369-23450473 9.2e-20 5_[-2]_64 chr14:100953643-10095372 9.2e-20 36_[+2]_10 chr12:56145973-56146091 9.2e-20 68_[+2]_1 chr11:94503762-94503849 9.2e-20 53_[+2]_3 chr10:74430997-74431091 9.2e-20 58_[+2]_5 chr10:68874582-68874685 9.2e-20 66_[+2]_3 chr9:118819636-118819726 9.2e-20 51_[+2]_8 chr7:18938173-18938254 9.2e-20 46_[+2]_4 chr7:3295314-3295394 9.2e-20 39_[+2]_10 chr6:9014599-9014695 9.2e-20 55_[+2]_10 chr5:170731817-170731902 9.2e-20 44_[+2]_10 chr5:150933093-150933198 9.2e-20 68_[+2]_1 chr5:26600616-26600726 9.2e-20 2_[-2]_67 chr4:166490888-166490987 9.2e-20 2_[-2]_66 chr4:34266624-34266715 9.2e-20 56_[+2]_4 chr3:198068107-198068206 9.2e-20 2_[-2]_66 chr3:120403854-120403950 9.2e-20 55_[+2]_10 chr2:212562033-212562151 9.2e-20 68_[+2]_1 chr2:40107195-40107304 9.2e-20 69_[+2] chr1:244914291-244914406 9.2e-20 67_[+2]_2 chr16:52968181-52968260 1.8e-19 10_[-2]_38 chr12:55720833-55720908 3.4e-19 39_[+2]_5 chr12:5701091-5701170 3.4e-19 [-2]_48 chr10:117007497-11700758 3.4e-19 46_[+2]_6 chr6:105582204-105582285 3.4e-19 41_[+2]_9 chr18_GL383571v1_alt:151 6.1e-19 67_[+2]_2 chr18:67506062-67506178 6.1e-19 67_[+2]_2 chr12:74005132-74005200 7.9e-19 37_[+2] chrY:3936640-3936720 7.9e-19 40_[+2]_9 chr20:21639806-21639905 9.7e-19 58_[+2]_10 chr3:12527443-12527548 1.8e-18 6_[-2]_63 chr19:35747214-35747303 5.2e-18 10_[-2]_48 chr6:7266622-7266700 5.6e-18 1_[-2]_46 chr12:26909472-26909564 8.1e-18 2_[-2]_59 chr7:103078654-103078732 2.3e-17 10_[-2]_37 chr8:144607186-144607259 2.7e-17 38_[+2]_4 chr19_GL383574v1_alt:176 1.6e-16 43_[+2]_2 chr19:34154020-34154096 1.6e-16 43_[+2]_2 chr3:57444269-57444338 2.1e-16 2_[-2]_36 chr11:78382368-78382460 2.3e-16 8_[-2]_53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA width=31 seqs=50 chr19_KI270867v1_alt:188 ( 66) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr6_KI270800v1_alt:7713 ( 49) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr3_KI270784v1_alt:1637 ( 67) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr20:39709002-39709117 ( 68) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr19:46889681-46889771 ( 59) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr19:41501337-41501438 ( 6) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr17:2428447-2428557 ( 65) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr16:59272944-59273048 ( 69) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr16:49002177-49002284 ( 64) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr15:69240229-69240313 ( 44) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr15:23450369-23450473 ( 6) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr14:100953643-10095372 ( 37) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr12:56145973-56146091 ( 69) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr11:94503762-94503849 ( 54) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr10:74430997-74431091 ( 59) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr10:68874582-68874685 ( 67) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr9:118819636-118819726 ( 52) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr7:18938173-18938254 ( 47) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr7:3295314-3295394 ( 40) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr6:9014599-9014695 ( 56) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr5:170731817-170731902 ( 45) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr5:150933093-150933198 ( 69) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr5:26600616-26600726 ( 3) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr4:166490888-166490987 ( 3) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr4:34266624-34266715 ( 57) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr3:198068107-198068206 ( 3) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr3:120403854-120403950 ( 56) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr2:212562033-212562151 ( 69) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr2:40107195-40107304 ( 70) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr1:244914291-244914406 ( 68) GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr16:52968181-52968260 ( 11) GACTCTGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr12:55720833-55720908 ( 40) GACTCCATCTCAAAAAAAAAAAAAAAAAAAA 1 chr12:5701091-5701170 ( 1) GACTTCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr10:117007497-11700758 ( 47) GACTCCATCTCAAAAAAAAAAAAAAAAAAAA 1 chr6:105582204-105582285 ( 42) GACTTCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr18_GL383571v1_alt:151 ( 68) GACTCCGTTTCAAAAAAAAAAAAAAAAAAAA 1 chr18:67506062-67506178 ( 68) GACTCCGTTTCAAAAAAAAAAAAAAAAAAAA 1 chr12:74005132-74005200 ( 38) AACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chrY:3936640-3936720 ( 41) AACTCCGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr20:21639806-21639905 ( 59) GACTCCGTATCAAAAAAAAAAAAAAAAAAAA 1 chr3:12527443-12527548 ( 7) GACTCCGTCTCAAAAAAAAAAAAAAAGAAAA 1 chr19:35747214-35747303 ( 11) GACTCTGTCTCAAAAAAAAAAAAAAAAAAGA 1 chr6:7266622-7266700 ( 2) GACTCTGTCTCAAAAAAAAAAAAAAAAAGAA 1 chr12:26909472-26909564 ( 3) GACTCCATCTCTAAAAAAAAAAAAAAAAAAA 1 chr7:103078654-103078732 ( 11) GACTCCGTCTCAAAAAAAAACAAAAACAAAA 1 chr8:144607186-144607259 ( 39) GACATTGTCTCAAAAAAAAAAAAAAAAAAAA 1 chr19_GL383574v1_alt:176 ( 44) GTCTCCGTCTCAAAAAAAATAAAATAAAATA 1 chr19:34154020-34154096 ( 44) GTCTCCGTCTCAAAAAAAATAAAATAAAATA 1 chr3:57444269-57444338 ( 3) GACTCTGTCTCAAAAAAAATAAAAATTAAAA 1 chr11:78382368-78382460 ( 9) GACTCTGTCTCAAAAAAAAAAAAATAATAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 20272 bayes= 10.2704 E= 1.0e-638 -257 -1229 187 -1229 201 -1229 -1229 -257 -1229 193 -1229 -1229 -357 -1229 -1229 204 -1229 184 -1229 -198 -1229 175 -1229 -99 -198 -1229 184 -1229 -1229 -1229 -1229 207 -357 184 -1229 -257 -1229 -1229 -1229 207 -1229 193 -1229 -1229 204 -1229 -1229 -357 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 198 -1229 -1229 -198 204 -371 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 198 -1229 -1229 -198 204 -1229 -1229 -357 198 -371 -371 -357 204 -1229 -1229 -357 204 -1229 -371 -1229 198 -1229 -371 -257 204 -1229 -1229 -357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 1.0e-638 0.040000 0.000000 0.960000 0.000000 0.960000 0.000000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 0.020000 0.000000 0.000000 0.980000 0.000000 0.940000 0.000000 0.060000 0.000000 0.880000 0.000000 0.120000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.940000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.940000 0.000000 0.000000 0.060000 0.980000 0.020000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.940000 0.000000 0.000000 0.060000 0.980000 0.000000 0.000000 0.020000 0.940000 0.020000 0.020000 0.020000 0.980000 0.000000 0.000000 0.020000 0.980000 0.000000 0.020000 0.000000 0.940000 0.000000 0.020000 0.040000 0.980000 0.000000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA MEME-2 regular expression -------------------------------------------------------------------------------- GACTCCGTCTCAAAAAAAAAAAAAAAAAAAA -------------------------------------------------------------------------------- Time 519.34 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 width = 31 sites = 50 llr = 1716 E-value = 3.8e-499 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::1:1::::1:::::::a:a:2:9:::::2: pos.-specific C 11::1:::::::::11::::8:::::9:6:a probability G ::::1::::1::::::a:a::8a19::::8: matrix T 99998a99a99aaa99::::2::::a:a3:: bits 2.1 * * 1.9 * * *** * * * * * * 1.7 * ** * **** ***** * ** * * 1.5 **** **** ********** **** * * Relative 1.2 **** *********************** ** Entropy 1.0 **************************** ** (49.5 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC consensus A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19:49916345-49916448 + 10 1.23e-19 cttttgtat ttttttttttttttttgagacggagtctcgc tctgtcgccc chr17:26690618-26690723 + 3 1.23e-19 tt ttttttttttttttttgagacggagtctcgc tctgtcgccc chrX:99826014-99826137 - 70 1.23e-19 . TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr9:137992728-137992814 - 54 1.23e-19 TT TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr6:151779814-151779917 - 70 1.23e-19 . TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr6:99570037-99570109 + 3 1.23e-19 tt ttttttttttttttttgagacggagtctcgc tctgtcgccc chr4:156891185-156891309 - 68 1.23e-19 TT TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr4:33943216-33943310 - 64 1.23e-19 . TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr3:74999893-75000000 + 6 1.23e-19 ttctc ttttttttttttttttgagacggagtctcgc tctgtcgccc chr1:201771159-201771255 - 65 1.23e-19 T TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr21:40585323-40585449 - 69 2.35e-19 T TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC TCTGTCGCCC chr12:127172244-12717231 - 42 2.35e-19 . TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC TCTGTCGCCA chrX:7246262-7246318 + 2 3.47e-19 t ttttttttttttttttgagacagagtctcgc tctgtcgctc chr2:142870245-142870407 - 70 3.47e-19 . TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC TCTGTCGCCC chr9:86928049-86928140 - 47 5.51e-18 TTTTGTTTTG TTTTTTGTTTTTTTTTGAGACGGAGTCTCGC TCTGTCGCCC chr6:97748554-97748663 - 66 8.87e-18 TTTT TCTTTTTTTTTTTTTTGAGATGGAGTCTCGC TCTGTCACCC chr10:102664769-10266485 + 7 1.31e-17 ttctct ctttttttttttttttgagacagagtcttgc tctgtcatcc chr12:79496876-79496966 - 46 1.73e-17 TTCTTTCTTT TTTTTTTTTTTTTTTTGAGACGGATTCTTGC TCTGTTGCCC chr7:68865517-68865590 - 42 2.47e-17 T TTTTTTTTTTTTTTTTGAGACAGAGTATTGC TGTATCACCC chr4:125857533-125857630 + 7 4.79e-17 tttgtt tttgttttttttttttgagatggagtctcgc tcggttgccc chr16:33726662-33726781 - 66 5.56e-17 TTTC TTTTCTTTTGTTTTTTGAGACGGAGTCTCGC TCTGTCACCC chr2:142442290-142442400 + 1 1.73e-16 . ttatttatttttttttgagacggagtctcgc tctgtcgccc chr15:72443997-72444109 - 64 2.85e-16 TTTTTT TTTTTTTTTTTTTTTTGAGCCGGAATCTCGC TCTGTCGCCC chr1:173186989-173187072 - 47 3.16e-16 TTTTTC TTTTTTTTTTTTGTTTGAGACAGAGTCTTAC TCTGTTACCC chr19:9411951-9412023 + 3 3.91e-16 tt ttattttattttttttgagacagagtcttgc tttgtcaccc chr2:88567965-88568052 + 4 5.86e-16 ttt cttttttcttttttttgagacagagtcttgc tctgttgccc chr6_GL000255v2_alt:4566 + 1 6.39e-16 . tcttttttttttttccgagacggagtcttgc tctgtcaccc chr6_GL000254v2_alt:4807 + 1 6.39e-16 . tcttttttttttttccgagacggagtcttgc tctgtcaccc chr6_GL000251v2_alt:4783 + 1 6.39e-16 . tcttttttttttttccgagacggagtcttgc tctgtcaccc chr6:33371999-33372058 + 1 6.39e-16 . tcttttttttttttccgagacggagtcttgc tctgtcaccc chrY:2440520-2440596 + 10 6.89e-16 tttttcttt ctttctttttttttttgaaacggagtctcgc tctgtcaccc chrX:2440520-2440596 + 10 6.89e-16 tttttcttt ctttctttttttttttgaaacggagtctcgc tctgtcaccc chr3:191232534-191232601 + 3 9.43e-16 tt tttatttttattttttgagatggagtctcac tctgttgcct chr15:92839132-92839211 + 13 1.16e-15 ttcttttttt ttttttttttttttttgagacaaggtctcac tctgtcaccc chr6:159844267-159844333 - 36 1.46e-15 . TTGTTTTTTGTTTTTTGAGATGGAGTCTCAC TCTGTCACCC chr8:46441903-46441995 - 59 1.57e-15 TTT TTTTTTTTTTTTTTTTTTGATGGAGTCTTGC TGTCTCACAC chr4:83838487-83838560 - 43 1.71e-15 . TTTTGTTTTTTTTTTTGAGACGGGATCTCAC CCTGCTGCCC chr2:232673731-232673816 + 7 1.71e-15 ttttta ttttattttattttttgagatggagtgtcgc tctgccaccc chr3:176034243-176034325 + 3 2.31e-15 tt ttgttttgttttttttgagacggagtatcgc tctgtcgccc chr15:57715321-57715416 + 14 3.12e-15 gtttgtttgg ttttgtgtttttttttgagatggggtcttgc tctgtcgccc chr22:48312600-48312710 + 4 3.40e-15 ttt ttattttttatattttgagacagagtcttgc tctgtcaccc chr3:46531151-46531238 + 2 5.57e-15 t ttttttttttttttttgagatggcgtttcac tctgtcacac chr9:94201876-94201945 - 38 6.50e-15 T TTTTATTTTTATTTTTTAGACAGAGTCTTGC TCTGTCACCA chr4:150724765-150724860 - 61 1.11e-14 TTTA TTTTATTTTATTTTTTGAGACAGGGTCTGGC TCTATCACCC chr12:80818146-80818251 + 13 1.54e-14 tttgtttgtt tgtttgttttctttttgagatggagtctcgc tctgtccccc chr20:50694655-50694722 - 35 2.38e-14 TT CTTTGTTTTTTTTTTTGGGACGGGGTCTCAC TCTGTCACCT chr20:35620409-35620508 - 64 3.95e-14 TTTTA TTTATTTATTTATTTTGAGACGGAGTGTTGC TCTGTCACCC chrX:119994220-119994305 - 49 6.02e-14 TTTCTT TTTTGTTGTGGTTTTTGAGACGGAGTCTCAC TCTGTCACCC chr13:20734568-20734723 + 1 6.46e-14 . atttatttatttatttgagacggagtctcgc gctcacgctc chr8:33482680-33482777 + 9 1.66e-13 tttttgtt tgtttgtttttttaatgagacagagtctcgc tctgtcaccc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19:49916345-49916448 1.2e-19 9_[+3]_60 chr17:26690618-26690723 1.2e-19 2_[+3]_67 chrX:99826014-99826137 1.2e-19 69_[-3] chr9:137992728-137992814 1.2e-19 53_[-3]_2 chr6:151779814-151779917 1.2e-19 69_[-3] chr6:99570037-99570109 1.2e-19 2_[+3]_39 chr4:156891185-156891309 1.2e-19 67_[-3]_2 chr4:33943216-33943310 1.2e-19 63_[-3] chr3:74999893-75000000 1.2e-19 5_[+3]_64 chr1:201771159-201771255 1.2e-19 64_[-3]_1 chr21:40585323-40585449 2.4e-19 68_[-3]_1 chr12:127172244-12717231 2.4e-19 41_[-3] chrX:7246262-7246318 3.5e-19 1_[+3]_24 chr2:142870245-142870407 3.5e-19 69_[-3] chr9:86928049-86928140 5.5e-18 46_[-3]_14 chr6:97748554-97748663 8.9e-18 65_[-3]_4 chr10:102664769-10266485 1.3e-17 6_[+3]_51 chr12:79496876-79496966 1.7e-17 45_[-3]_14 chr7:68865517-68865590 2.5e-17 41_[-3]_1 chr4:125857533-125857630 4.8e-17 6_[+3]_60 chr16:33726662-33726781 5.6e-17 65_[-3]_4 chr2:142442290-142442400 1.7e-16 [+3]_69 chr15:72443997-72444109 2.8e-16 63_[-3]_6 chr1:173186989-173187072 3.2e-16 46_[-3]_6 chr19:9411951-9412023 3.9e-16 2_[+3]_39 chr2:88567965-88568052 5.9e-16 3_[+3]_53 chr6_GL000255v2_alt:4566 6.4e-16 [+3]_28 chr6_GL000254v2_alt:4807 6.4e-16 [+3]_28 chr6_GL000251v2_alt:4783 6.4e-16 [+3]_28 chr6:33371999-33372058 6.4e-16 [+3]_28 chrY:2440520-2440596 6.9e-16 9_[+3]_36 chrX:2440520-2440596 6.9e-16 9_[+3]_36 chr3:191232534-191232601 9.4e-16 2_[+3]_34 chr15:92839132-92839211 1.2e-15 12_[+3]_36 chr6:159844267-159844333 1.5e-15 35_[-3] chr8:46441903-46441995 1.6e-15 58_[-3]_3 chr4:83838487-83838560 1.7e-15 42_[-3] chr2:232673731-232673816 1.7e-15 6_[+3]_48 chr3:176034243-176034325 2.3e-15 2_[+3]_49 chr15:57715321-57715416 3.1e-15 13_[+3]_51 chr22:48312600-48312710 3.4e-15 3_[+3]_66 chr3:46531151-46531238 5.6e-15 1_[+3]_55 chr9:94201876-94201945 6.5e-15 37_[-3]_1 chr4:150724765-150724860 1.1e-14 60_[-3]_4 chr12:80818146-80818251 1.5e-14 12_[+3]_57 chr20:50694655-50694722 2.4e-14 34_[-3]_2 chr20:35620409-35620508 3.9e-14 63_[-3]_5 chrX:119994220-119994305 6e-14 48_[-3]_6 chr13:20734568-20734723 6.5e-14 [+3]_69 chr8:33482680-33482777 1.7e-13 8_[+3]_58 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC width=31 seqs=50 chr19:49916345-49916448 ( 10) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr17:26690618-26690723 ( 3) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chrX:99826014-99826137 ( 70) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr9:137992728-137992814 ( 54) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr6:151779814-151779917 ( 70) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr6:99570037-99570109 ( 3) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr4:156891185-156891309 ( 68) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr4:33943216-33943310 ( 64) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr3:74999893-75000000 ( 6) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr1:201771159-201771255 ( 65) TTTTTTTTTTTTTTTTGAGACGGAGTCTCGC 1 chr21:40585323-40585449 ( 69) TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC 1 chr12:127172244-12717231 ( 42) TTTTTTTTTTTTTTTTGAGACGGAGTCTTGC 1 chrX:7246262-7246318 ( 2) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr2:142870245-142870407 ( 70) TTTTTTTTTTTTTTTTGAGACAGAGTCTCGC 1 chr9:86928049-86928140 ( 47) TTTTTTGTTTTTTTTTGAGACGGAGTCTCGC 1 chr6:97748554-97748663 ( 66) TCTTTTTTTTTTTTTTGAGATGGAGTCTCGC 1 chr10:102664769-10266485 ( 7) CTTTTTTTTTTTTTTTGAGACAGAGTCTTGC 1 chr12:79496876-79496966 ( 46) TTTTTTTTTTTTTTTTGAGACGGATTCTTGC 1 chr7:68865517-68865590 ( 42) TTTTTTTTTTTTTTTTGAGACAGAGTATTGC 1 chr4:125857533-125857630 ( 7) TTTGTTTTTTTTTTTTGAGATGGAGTCTCGC 1 chr16:33726662-33726781 ( 66) TTTTCTTTTGTTTTTTGAGACGGAGTCTCGC 1 chr2:142442290-142442400 ( 1) TTATTTATTTTTTTTTGAGACGGAGTCTCGC 1 chr15:72443997-72444109 ( 64) TTTTTTTTTTTTTTTTGAGCCGGAATCTCGC 1 chr1:173186989-173187072 ( 47) TTTTTTTTTTTTGTTTGAGACAGAGTCTTAC 1 chr19:9411951-9412023 ( 3) TTATTTTATTTTTTTTGAGACAGAGTCTTGC 1 chr2:88567965-88568052 ( 4) CTTTTTTCTTTTTTTTGAGACAGAGTCTTGC 1 chr6_GL000255v2_alt:4566 ( 1) TCTTTTTTTTTTTTCCGAGACGGAGTCTTGC 1 chr6_GL000254v2_alt:4807 ( 1) TCTTTTTTTTTTTTCCGAGACGGAGTCTTGC 1 chr6_GL000251v2_alt:4783 ( 1) TCTTTTTTTTTTTTCCGAGACGGAGTCTTGC 1 chr6:33371999-33372058 ( 1) TCTTTTTTTTTTTTCCGAGACGGAGTCTTGC 1 chrY:2440520-2440596 ( 10) CTTTCTTTTTTTTTTTGAAACGGAGTCTCGC 1 chrX:2440520-2440596 ( 10) CTTTCTTTTTTTTTTTGAAACGGAGTCTCGC 1 chr3:191232534-191232601 ( 3) TTTATTTTTATTTTTTGAGATGGAGTCTCAC 1 chr15:92839132-92839211 ( 13) TTTTTTTTTTTTTTTTGAGACAAGGTCTCAC 1 chr6:159844267-159844333 ( 36) TTGTTTTTTGTTTTTTGAGATGGAGTCTCAC 1 chr8:46441903-46441995 ( 59) TTTTTTTTTTTTTTTTTTGATGGAGTCTTGC 1 chr4:83838487-83838560 ( 43) TTTTGTTTTTTTTTTTGAGACGGGATCTCAC 1 chr2:232673731-232673816 ( 7) TTTTATTTTATTTTTTGAGATGGAGTGTCGC 1 chr3:176034243-176034325 ( 3) TTGTTTTGTTTTTTTTGAGACGGAGTATCGC 1 chr15:57715321-57715416 ( 14) TTTTGTGTTTTTTTTTGAGATGGGGTCTTGC 1 chr22:48312600-48312710 ( 4) TTATTTTTTATATTTTGAGACAGAGTCTTGC 1 chr3:46531151-46531238 ( 2) TTTTTTTTTTTTTTTTGAGATGGCGTTTCAC 1 chr9:94201876-94201945 ( 38) TTTTATTTTTATTTTTTAGACAGAGTCTTGC 1 chr4:150724765-150724860 ( 61) TTTTATTTTATTTTTTGAGACAGGGTCTGGC 1 chr12:80818146-80818251 ( 13) TGTTTGTTTTCTTTTTGAGATGGAGTCTCGC 1 chr20:50694655-50694722 ( 35) CTTTGTTTTTTTTTTTGGGACGGGGTCTCAC 1 chr20:35620409-35620508 ( 64) TTTATTTATTTATTTTGAGACGGAGTGTTGC 1 chrX:119994220-119994305 ( 49) TTTTGTTGTGGTTTTTGAGACGGAGTCTCAC 1 chr13:20734568-20734723 ( 1) ATTTATTTATTTATTTGAGACGGAGTCTCGC 1 chr8:33482680-33482777 ( 9) TGTTTGTTTTTTTAATGAGACAGAGTCTCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 20272 bayes= 10.5838 E= 3.8e-499 -357 -139 -1229 189 -1229 -139 -271 186 -198 -1229 -271 192 -257 -1229 -371 198 -157 -213 -171 171 -1229 -1229 -271 201 -357 -1229 -271 198 -257 -371 -271 192 -357 -1229 -1229 204 -157 -1229 -213 186 -357 -371 -371 198 -257 -1229 -1229 201 -357 -1229 -371 201 -357 -1229 -1229 204 -357 -171 -1229 192 -1229 -171 -1229 195 -1229 -1229 187 -257 201 -1229 -371 -357 -257 -1229 187 -1229 204 -371 -1229 -1229 -1229 164 -1229 -40 1 -1229 153 -1229 -357 -1229 190 -1229 189 -371 -139 -1229 -257 -1229 184 -357 -1229 -1229 -1229 207 -257 178 -271 -357 -1229 -1229 -1229 207 -1229 129 -371 52 -57 -1229 168 -1229 -1229 193 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 3.8e-499 0.020000 0.100000 0.000000 0.880000 0.000000 0.100000 0.040000 0.860000 0.060000 0.000000 0.040000 0.900000 0.040000 0.000000 0.020000 0.940000 0.080000 0.060000 0.080000 0.780000 0.000000 0.000000 0.040000 0.960000 0.020000 0.000000 0.040000 0.940000 0.040000 0.020000 0.040000 0.900000 0.020000 0.000000 0.000000 0.980000 0.080000 0.000000 0.060000 0.860000 0.020000 0.020000 0.020000 0.940000 0.040000 0.000000 0.000000 0.960000 0.020000 0.000000 0.020000 0.960000 0.020000 0.000000 0.000000 0.980000 0.020000 0.080000 0.000000 0.900000 0.000000 0.080000 0.000000 0.920000 0.000000 0.000000 0.960000 0.040000 0.960000 0.000000 0.020000 0.020000 0.040000 0.000000 0.960000 0.000000 0.980000 0.020000 0.000000 0.000000 0.000000 0.820000 0.000000 0.180000 0.240000 0.000000 0.760000 0.000000 0.020000 0.000000 0.980000 0.000000 0.880000 0.020000 0.100000 0.000000 0.040000 0.000000 0.940000 0.020000 0.000000 0.000000 0.000000 1.000000 0.040000 0.900000 0.040000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.640000 0.020000 0.340000 0.160000 0.000000 0.840000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTGAGACGGAGTCTYGC MEME-3 regular expression -------------------------------------------------------------------------------- TTTTTTTTTTTTTTTTGAGAC[GA]GAGTCT[CT]GC -------------------------------------------------------------------------------- Time 757.28 secs. ******************************************************************************** ******************************************************************************** MOTIF CTGCACTCCAGCCTGGGCGACA MEME-4 width = 22 sites = 50 llr = 1506 E-value = 1.4e-426 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a::::a:::::::::a:a pos.-specific C a::a:a:aa::aa::::a::a: probability G ::a:::::::a:::aaa:a::: matrix T :a::::a::::::a:::::::: bits 2.1 * * * * * * * 1.9 ********************** 1.7 ********************** 1.5 ********************** Relative 1.2 ********************** Entropy 1.0 ********************** (43.5 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTGCACTCCAGCCTGGGCGACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr19_KI270867v1_alt:188 + 38 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr6_KI270800v1_alt:7713 + 21 8.14e-14 gatccctcca ctgcactccagcctgggcgaca gagcaagact chr3_KI270784v1_alt:1637 + 39 8.14e-14 gatcccgtca ctgcactccagcctgggcgaca gagcgagact chr21:40585323-40585449 + 45 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcaagact chr20:39709002-39709117 + 40 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr20:21639806-21639905 + 31 8.14e-14 gatcccacca ctgcactccagcctgggcgaca gagcgagact chr19:46889681-46889771 + 31 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr18:67506062-67506178 + 40 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr18:27014348-27014483 + 50 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr16:84848873-84849007 + 57 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr16:49002177-49002284 + 36 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr16:4121202-4121294 + 39 8.14e-14 gatctcgcca ctgcactccagcctgggcgaca gagactccac chr15:72443997-72444109 + 40 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagatt chr15:69240229-69240313 + 16 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr15:45277857-45277989 + 49 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr14:102316467-10231654 + 26 8.14e-14 aatctcgcca ctgcactccagcctgggcgaca gagggagatt chr14:100953643-10095372 + 9 8.14e-14 tcccgcca ctgcactccagcctgggcgaca gagcgagact chr12:56145973-56146091 + 41 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr11:133433157-13343327 + 50 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr11:94503762-94503849 + 26 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr11:61159648-61159738 + 27 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr10:96731316-96731453 + 59 8.14e-14 gatcacgcca ctgcactccagcctgggcgaca gagcgacact chr10:74430997-74431091 + 31 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr10:68874582-68874685 + 39 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chrY:3936640-3936720 + 13 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgaaact chrX:21092030-21092108 + 10 8.14e-14 atcccgcca ctgcactccagcctgggcgaca gagcgagact chr9:137992728-137992814 + 30 8.14e-14 gatccggcca ctgcactccagcctgggcgaca gagcgagact chr9:118819636-118819726 + 24 8.14e-14 gatcctgcca ctgcactccagcctgggcgaca gagcgagact chr9:86928049-86928140 + 23 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr9:38978856-38978977 + 59 8.14e-14 gattccgcca ctgcactccagcctgggcgaca gagccagact chr9:14225342-14225486 + 54 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr9:5118095-5118175 + 27 8.14e-14 gacctcgcca ctgcactccagcctgggcgaca gagcgagact chr7:123113980-123114107 + 52 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr7:88736500-88736641 + 53 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr7:3295314-3295394 + 12 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr6:9014599-9014695 + 28 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr5:150933093-150933198 + 41 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr4:156891185-156891309 + 44 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr4:34266624-34266715 + 29 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr4:33943216-33943310 + 40 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr3:120403854-120403950 + 28 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr3:56132525-56132645 + 63 8.14e-14 gatcacgcca ctgcactccagcctgggcgaca gagcgagact chr2:212562033-212562151 + 41 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr2:142870245-142870407 + 46 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr2:118148563-118148706 + 54 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr2:40107195-40107304 + 42 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr1:244914291-244914406 + 40 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr1:231968484-231968621 + 51 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact chr1:211811761-211811793 + 10 8.14e-14 atcccgcca ctgcactccagcctgggcgaca g chr1:201771159-201771255 + 41 8.14e-14 gatcccgcca ctgcactccagcctgggcgaca gagcgagact -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19_KI270867v1_alt:188 8.1e-14 37_[+4]_41 chr6_KI270800v1_alt:7713 8.1e-14 20_[+4]_37 chr3_KI270784v1_alt:1637 8.1e-14 38_[+4]_39 chr21:40585323-40585449 8.1e-14 44_[+4]_34 chr20:39709002-39709117 8.1e-14 39_[+4]_39 chr20:21639806-21639905 8.1e-14 30_[+4]_47 chr19:46889681-46889771 8.1e-14 30_[+4]_38 chr18:67506062-67506178 8.1e-14 39_[+4]_39 chr18:27014348-27014483 8.1e-14 49_[+4]_29 chr16:84848873-84849007 8.1e-14 56_[+4]_22 chr16:49002177-49002284 8.1e-14 35_[+4]_43 chr16:4121202-4121294 8.1e-14 38_[+4]_32 chr15:72443997-72444109 8.1e-14 39_[+4]_39 chr15:69240229-69240313 8.1e-14 15_[+4]_47 chr15:45277857-45277989 8.1e-14 48_[+4]_30 chr14:102316467-10231654 8.1e-14 25_[+4]_27 chr14:100953643-10095372 8.1e-14 8_[+4]_47 chr12:56145973-56146091 8.1e-14 40_[+4]_38 chr11:133433157-13343327 8.1e-14 49_[+4]_29 chr11:94503762-94503849 8.1e-14 25_[+4]_40 chr11:61159648-61159738 8.1e-14 26_[+4]_42 chr10:96731316-96731453 8.1e-14 58_[+4]_20 chr10:74430997-74431091 8.1e-14 30_[+4]_42 chr10:68874582-68874685 8.1e-14 38_[+4]_40 chrY:3936640-3936720 8.1e-14 12_[+4]_46 chrX:21092030-21092108 8.1e-14 9_[+4]_47 chr9:137992728-137992814 8.1e-14 29_[+4]_35 chr9:118819636-118819726 8.1e-14 23_[+4]_45 chr9:86928049-86928140 8.1e-14 22_[+4]_47 chr9:38978856-38978977 8.1e-14 58_[+4]_20 chr9:14225342-14225486 8.1e-14 53_[+4]_25 chr9:5118095-5118175 8.1e-14 26_[+4]_32 chr7:123113980-123114107 8.1e-14 51_[+4]_27 chr7:88736500-88736641 8.1e-14 52_[+4]_26 chr7:3295314-3295394 8.1e-14 11_[+4]_47 chr6:9014599-9014695 8.1e-14 27_[+4]_47 chr5:150933093-150933198 8.1e-14 40_[+4]_38 chr4:156891185-156891309 8.1e-14 43_[+4]_35 chr4:34266624-34266715 8.1e-14 28_[+4]_41 chr4:33943216-33943310 8.1e-14 39_[+4]_33 chr3:120403854-120403950 8.1e-14 27_[+4]_47 chr3:56132525-56132645 8.1e-14 62_[+4]_16 chr2:212562033-212562151 8.1e-14 40_[+4]_38 chr2:142870245-142870407 8.1e-14 45_[+4]_33 chr2:118148563-118148706 8.1e-14 53_[+4]_25 chr2:40107195-40107304 8.1e-14 41_[+4]_37 chr1:244914291-244914406 8.1e-14 39_[+4]_39 chr1:231968484-231968621 8.1e-14 50_[+4]_28 chr1:211811761-211811793 8.1e-14 9_[+4]_1 chr1:201771159-201771255 8.1e-14 40_[+4]_34 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCACTCCAGCCTGGGCGACA width=22 seqs=50 chr19_KI270867v1_alt:188 ( 38) CTGCACTCCAGCCTGGGCGACA 1 chr6_KI270800v1_alt:7713 ( 21) CTGCACTCCAGCCTGGGCGACA 1 chr3_KI270784v1_alt:1637 ( 39) CTGCACTCCAGCCTGGGCGACA 1 chr21:40585323-40585449 ( 45) CTGCACTCCAGCCTGGGCGACA 1 chr20:39709002-39709117 ( 40) CTGCACTCCAGCCTGGGCGACA 1 chr20:21639806-21639905 ( 31) CTGCACTCCAGCCTGGGCGACA 1 chr19:46889681-46889771 ( 31) CTGCACTCCAGCCTGGGCGACA 1 chr18:67506062-67506178 ( 40) CTGCACTCCAGCCTGGGCGACA 1 chr18:27014348-27014483 ( 50) CTGCACTCCAGCCTGGGCGACA 1 chr16:84848873-84849007 ( 57) CTGCACTCCAGCCTGGGCGACA 1 chr16:49002177-49002284 ( 36) CTGCACTCCAGCCTGGGCGACA 1 chr16:4121202-4121294 ( 39) CTGCACTCCAGCCTGGGCGACA 1 chr15:72443997-72444109 ( 40) CTGCACTCCAGCCTGGGCGACA 1 chr15:69240229-69240313 ( 16) CTGCACTCCAGCCTGGGCGACA 1 chr15:45277857-45277989 ( 49) CTGCACTCCAGCCTGGGCGACA 1 chr14:102316467-10231654 ( 26) CTGCACTCCAGCCTGGGCGACA 1 chr14:100953643-10095372 ( 9) CTGCACTCCAGCCTGGGCGACA 1 chr12:56145973-56146091 ( 41) CTGCACTCCAGCCTGGGCGACA 1 chr11:133433157-13343327 ( 50) CTGCACTCCAGCCTGGGCGACA 1 chr11:94503762-94503849 ( 26) CTGCACTCCAGCCTGGGCGACA 1 chr11:61159648-61159738 ( 27) CTGCACTCCAGCCTGGGCGACA 1 chr10:96731316-96731453 ( 59) CTGCACTCCAGCCTGGGCGACA 1 chr10:74430997-74431091 ( 31) CTGCACTCCAGCCTGGGCGACA 1 chr10:68874582-68874685 ( 39) CTGCACTCCAGCCTGGGCGACA 1 chrY:3936640-3936720 ( 13) CTGCACTCCAGCCTGGGCGACA 1 chrX:21092030-21092108 ( 10) CTGCACTCCAGCCTGGGCGACA 1 chr9:137992728-137992814 ( 30) CTGCACTCCAGCCTGGGCGACA 1 chr9:118819636-118819726 ( 24) CTGCACTCCAGCCTGGGCGACA 1 chr9:86928049-86928140 ( 23) CTGCACTCCAGCCTGGGCGACA 1 chr9:38978856-38978977 ( 59) CTGCACTCCAGCCTGGGCGACA 1 chr9:14225342-14225486 ( 54) CTGCACTCCAGCCTGGGCGACA 1 chr9:5118095-5118175 ( 27) CTGCACTCCAGCCTGGGCGACA 1 chr7:123113980-123114107 ( 52) CTGCACTCCAGCCTGGGCGACA 1 chr7:88736500-88736641 ( 53) CTGCACTCCAGCCTGGGCGACA 1 chr7:3295314-3295394 ( 12) CTGCACTCCAGCCTGGGCGACA 1 chr6:9014599-9014695 ( 28) CTGCACTCCAGCCTGGGCGACA 1 chr5:150933093-150933198 ( 41) CTGCACTCCAGCCTGGGCGACA 1 chr4:156891185-156891309 ( 44) CTGCACTCCAGCCTGGGCGACA 1 chr4:34266624-34266715 ( 29) CTGCACTCCAGCCTGGGCGACA 1 chr4:33943216-33943310 ( 40) CTGCACTCCAGCCTGGGCGACA 1 chr3:120403854-120403950 ( 28) CTGCACTCCAGCCTGGGCGACA 1 chr3:56132525-56132645 ( 63) CTGCACTCCAGCCTGGGCGACA 1 chr2:212562033-212562151 ( 41) CTGCACTCCAGCCTGGGCGACA 1 chr2:142870245-142870407 ( 46) CTGCACTCCAGCCTGGGCGACA 1 chr2:118148563-118148706 ( 54) CTGCACTCCAGCCTGGGCGACA 1 chr2:40107195-40107304 ( 42) CTGCACTCCAGCCTGGGCGACA 1 chr1:244914291-244914406 ( 40) CTGCACTCCAGCCTGGGCGACA 1 chr1:231968484-231968621 ( 51) CTGCACTCCAGCCTGGGCGACA 1 chr1:211811761-211811793 ( 10) CTGCACTCCAGCCTGGGCGACA 1 chr1:201771159-201771255 ( 41) CTGCACTCCAGCCTGGGCGACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 23584 bayes= 9.36954 E= 1.4e-426 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 -1229 193 -1229 -1229 193 -1229 -1229 207 -1229 -1229 -1229 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 193 -1229 -1229 -1229 193 -1229 -1229 207 -1229 -1229 -1229 -1229 -1229 193 -1229 -1229 193 -1229 -1229 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 -1229 193 -1229 -1229 -1229 193 -1229 -1229 -1229 193 -1229 -1229 193 -1229 -1229 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 193 -1229 -1229 207 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 1.4e-426 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCACTCCAGCCTGGGCGACA MEME-4 regular expression -------------------------------------------------------------------------------- CTGCACTCCAGCCTGGGCGACA -------------------------------------------------------------------------------- Time 979.28 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 width = 30 sites = 50 llr = 1778 E-value = 7.5e-528 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A a:::a:::2a:a::1:2::9::::a::::a pos.-specific C ::::::a8:::::979:aa:9::a:9:aa: probability G :9:a:a::8:a:::::7:::::a::::::: matrix T :1a::::2::::a:11::::1a:::1a::: bits 2.1 * * * * * 1.9 * * * * **** ** **** **** 1.7 ******* **** ************* 1.5 ******* ***** ************* Relative 1.2 ************** * ************* Entropy 1.0 ************** *************** (51.3 bits) 0.8 ****************************** 0.6 ****************************** 0.4 ****************************** 0.2 ****************************** 0.0 ------------------------------ Multilevel AGTGAGCCGAGATCCCGCCACTGCACTCCA consensus TA A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------ chr6_GL000255v2_alt:9781 + 33 1.23e-18 cggagcttgc agtgagccgagatcccgccactgcactcca gcctggacga chr6_GL000252v2_alt:9782 + 33 1.23e-18 cggagcttgc agtgagccgagatcccgccactgcactcca gcctggacga chr15:23450369-23450473 - 55 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chrY:8798682-8798778 - 55 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr8:91388271-91388374 - 22 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCAA chr6:151779814-151779917 + 26 1.23e-18 cggagcttgc agtgagccgagatcccgccactgcactcca ccctgggcga chr6:110424433-110424570 + 31 1.23e-18 cggagcttgc agtgagccgagatcccgccactgcactcca gcctgagcga chr6:29396131-29396263 - 39 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr5:149021884-149022031 - 54 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr5:26600616-26600726 - 52 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr4:40528794-40528949 + 63 1.23e-18 cggagcttgc agtgagccgagatcccgccactgcactcca gcctgggc chr3:159201627-159201752 - 43 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr3:85175919-85176050 - 42 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr3:74999893-75000000 - 51 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr3:12527443-12527548 - 56 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr2:142442290-142442400 - 46 1.23e-18 TGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr2:59892887-59892992 - 55 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr2:28070546-28070678 - 35 1.23e-18 CGGAGCTTGC AGTGAGCCGAGATCCCGCCACTGCACTCCA GCCTGGGTGA chr11:112726134-11272623 - 58 2.35e-18 CGGAGCTTGC AGTGAGCCGAGATCCCACCACTGCACTCCA GCCTGGGCGA chr3:188527749-188527877 - 33 2.35e-18 CGGAGGTTGC AGTGAGCCGAGATCCCACCACTGCACTCCA GCCTGGGTGA chr19:49916345-49916448 - 55 4.58e-18 CGGAGCTTGC AGTGAGCCAAGATCCCGCCACTGCACTCCA GCCTGGGCGA chr10:29407123-29407216 + 21 4.58e-18 tggagcttgc agtgagccaagatcccgccactgcactcca gtccgggcga chr16:59272944-59273048 + 21 1.54e-17 cggagcttgc agtgagccgagatcccgccactgcattcca gcctgggcga chr11:38237205-38237328 - 29 1.54e-17 CGGAGCTTGC AGTGAGCCGAGATCCCGCCATTGCACTCCA GCCTGGGTGA chr1:173599126-173599240 - 33 2.14e-17 CGGAGCTTGC AGTGAGCTGAGATCTCGCCACTGCACTCCA GCCTGGGTGA chr18:71893636-71893731 + 26 2.46e-17 cggagcttgc agtgagctgagatcctgccactgcactcca gcctgggcaa chr1:74391957-74392094 - 38 2.46e-17 CGGAGCTTGC AGTGAGCCAAGATCCTGCCACTGCACTCCA GCCTGGGCGA chr11:127933915-12793406 + 38 5.61e-17 cggagcttgc agtgagctgagatcacaccactgcactcca gcctgggcaa chr3:198068107-198068206 - 52 5.61e-17 CGGAGCTTGC AGTGAGCCGAGATCCCGTCACTGCACTCCA GCCTGGGCGA chr20:35620409-35620508 + 20 6.31e-17 tggagcttgc agtgagccaagatctcaccactgcactcca gcctgggtga chr3:41107409-41107558 - 41 6.31e-17 CGGAGCTTGC AGTGAGCCGAGATCCCGCCCCTGCACTCCA GCCTGGGCGA chr13:20734568-20734723 - 46 9.69e-17 CGGAGCTTGT AGTGAGCCAAGATCCCGCCACCGCACTCCA GCCTGAGCGT chrX:48413786-48413885 + 31 1.26e-16 gggaggttgc attgagctgagatcccaccactgcactcca gcctgggtga chrX:48381540-48381639 - 40 1.26e-16 GGGAGGTTGC ATTGAGCTGAGATCCCACCACTGCACTCCA GCCTGGGTGA chr12:80818146-80818251 - 58 1.37e-16 CGGAGCTTGC AGTGAGCCAAGATCCGGCCACTGCACTCCA GCCTGGGGGA chr20:5620581-5620720 - 41 1.89e-16 CAGAGCTTGC ATTGAGCCGAGATCACACCACTGCACTCCA GCCTGGGCGA chr17:2428447-2428557 + 17 2.69e-16 cagagcttgc agtgagctgagatcctgccattgcactcca gcccaggcga chr2:114289902-114290036 - 35 3.16e-16 CAGAGCTTGC AGTAAGCCAAGATCACGCCACTGCACTCCA GCCTGGGCGA chr2:40995299-40995401 + 15 3.46e-16 tggagtttgc agtgagctgagatcccaccactgcacttca gcctgggtga chr7:63595365-63595488 - 33 3.92e-16 CGGAGCTTGC AGTGAGCTGAGATCTCGCCACCGCACTCCA GCCTGGGTGA chr5:27225859-27225999 - 40 4.10e-16 CAGAGCTTGC AGTGAGCCAAGATCACTCCACTGCACTCCA GCCTGGGCAA chr4:125857533-125857630 - 56 5.09e-16 CGGAGCTTGC AGTGAGCCAAGATCTCACCACTGCATTCCA TCCAGCCTGG chr20:37458444-37458584 + 40 1.17e-15 tggagcctgc agtgagctgagattatgccactgcactcca gcctgggcaa chr3:12274439-12274554 - 42 4.35e-15 CAGAGCTTGC AGTGAACCGAGATTTCACCACTGCACTCCA GCCTGGGTGA chr16:89250746-89250874 + 34 5.15e-15 cggagcttgc agtgagtcaagatcccacctctgcactcca gcctgagcaa chr6:76544585-76544717 - 37 9.16e-15 CAGAGGTTGC AGTAAGCCAAGATCACACCACTGTACTCCA GCCTGGGTGA chr2:186537559-186537693 - 40 9.16e-15 CGGAGCTTGC AGTGAGCCGAGATGTCGCCACTGCCTTCCA GCCTGGGTGA chr19:38243056-38243146 - 53 2.17e-14 GAGTTTGC AGTGAGCCGAGATCCTGCCATTGCACTCTG GCCTGGGCCA chr3:53841451-53841505 - 16 5.56e-14 GGACCTTGC AGTGAGCTGTGAAGCTGCCACTGCACTCCA GCCTGGGTGA chr5:174998771-174998907 - 23 3.56e-13 CGGAGCTTGC AGTGATCTGAGATCACGCTGCTGCCCTCCA GCCTGGGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr6_GL000255v2_alt:9781 1.2e-18 32_[+5]_38 chr6_GL000252v2_alt:9782 1.2e-18 32_[+5]_38 chr15:23450369-23450473 1.2e-18 54_[-5]_16 chrY:8798682-8798778 1.2e-18 54_[-5]_12 chr8:91388271-91388374 1.2e-18 21_[-5]_49 chr6:151779814-151779917 1.2e-18 25_[+5]_45 chr6:110424433-110424570 1.2e-18 30_[+5]_40 chr6:29396131-29396263 1.2e-18 38_[-5]_32 chr5:149021884-149022031 1.2e-18 53_[-5]_17 chr5:26600616-26600726 1.2e-18 51_[-5]_19 chr4:40528794-40528949 1.2e-18 62_[+5]_8 chr3:159201627-159201752 1.2e-18 42_[-5]_28 chr3:85175919-85176050 1.2e-18 41_[-5]_29 chr3:74999893-75000000 1.2e-18 50_[-5]_20 chr3:12527443-12527548 1.2e-18 55_[-5]_15 chr2:142442290-142442400 1.2e-18 45_[-5]_25 chr2:59892887-59892992 1.2e-18 54_[-5]_16 chr2:28070546-28070678 1.2e-18 34_[-5]_36 chr11:112726134-11272623 2.3e-18 57_[-5]_13 chr3:188527749-188527877 2.3e-18 32_[-5]_38 chr19:49916345-49916448 4.6e-18 54_[-5]_16 chr10:29407123-29407216 4.6e-18 20_[+5]_43 chr16:59272944-59273048 1.5e-17 20_[+5]_50 chr11:38237205-38237328 1.5e-17 28_[-5]_42 chr1:173599126-173599240 2.1e-17 32_[-5]_38 chr18:71893636-71893731 2.5e-17 25_[+5]_40 chr1:74391957-74392094 2.5e-17 37_[-5]_33 chr11:127933915-12793406 5.6e-17 37_[+5]_33 chr3:198068107-198068206 5.6e-17 51_[-5]_18 chr20:35620409-35620508 6.3e-17 19_[+5]_50 chr3:41107409-41107558 6.3e-17 40_[-5]_30 chr13:20734568-20734723 9.7e-17 45_[-5]_25 chrX:48413786-48413885 1.3e-16 30_[+5]_39 chrX:48381540-48381639 1.3e-16 39_[-5]_30 chr12:80818146-80818251 1.4e-16 57_[-5]_13 chr20:5620581-5620720 1.9e-16 40_[-5]_30 chr17:2428447-2428557 2.7e-16 16_[+5]_54 chr2:114289902-114290036 3.2e-16 34_[-5]_36 chr2:40995299-40995401 3.5e-16 14_[+5]_56 chr7:63595365-63595488 3.9e-16 32_[-5]_38 chr5:27225859-27225999 4.1e-16 39_[-5]_31 chr4:125857533-125857630 5.1e-16 55_[-5]_12 chr20:37458444-37458584 1.2e-15 39_[+5]_31 chr3:12274439-12274554 4.3e-15 41_[-5]_29 chr16:89250746-89250874 5.2e-15 33_[+5]_37 chr6:76544585-76544717 9.2e-15 36_[-5]_34 chr2:186537559-186537693 9.2e-15 39_[-5]_31 chr19:38243056-38243146 2.2e-14 52_[-5]_8 chr3:53841451-53841505 5.6e-14 15_[-5]_9 chr5:174998771-174998907 3.6e-13 22_[-5]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGAGCCGAGATCCCGCCACTGCACTCCA width=30 seqs=50 chr6_GL000255v2_alt:9781 ( 33) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr6_GL000252v2_alt:9782 ( 33) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr15:23450369-23450473 ( 55) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chrY:8798682-8798778 ( 55) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr8:91388271-91388374 ( 22) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr6:151779814-151779917 ( 26) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr6:110424433-110424570 ( 31) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr6:29396131-29396263 ( 39) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr5:149021884-149022031 ( 54) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr5:26600616-26600726 ( 52) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr4:40528794-40528949 ( 63) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr3:159201627-159201752 ( 43) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr3:85175919-85176050 ( 42) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr3:74999893-75000000 ( 51) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr3:12527443-12527548 ( 56) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr2:142442290-142442400 ( 46) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr2:59892887-59892992 ( 55) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr2:28070546-28070678 ( 35) AGTGAGCCGAGATCCCGCCACTGCACTCCA 1 chr11:112726134-11272623 ( 58) AGTGAGCCGAGATCCCACCACTGCACTCCA 1 chr3:188527749-188527877 ( 33) AGTGAGCCGAGATCCCACCACTGCACTCCA 1 chr19:49916345-49916448 ( 55) AGTGAGCCAAGATCCCGCCACTGCACTCCA 1 chr10:29407123-29407216 ( 21) AGTGAGCCAAGATCCCGCCACTGCACTCCA 1 chr16:59272944-59273048 ( 21) AGTGAGCCGAGATCCCGCCACTGCATTCCA 1 chr11:38237205-38237328 ( 29) AGTGAGCCGAGATCCCGCCATTGCACTCCA 1 chr1:173599126-173599240 ( 33) AGTGAGCTGAGATCTCGCCACTGCACTCCA 1 chr18:71893636-71893731 ( 26) AGTGAGCTGAGATCCTGCCACTGCACTCCA 1 chr1:74391957-74392094 ( 38) AGTGAGCCAAGATCCTGCCACTGCACTCCA 1 chr11:127933915-12793406 ( 38) AGTGAGCTGAGATCACACCACTGCACTCCA 1 chr3:198068107-198068206 ( 52) AGTGAGCCGAGATCCCGTCACTGCACTCCA 1 chr20:35620409-35620508 ( 20) AGTGAGCCAAGATCTCACCACTGCACTCCA 1 chr3:41107409-41107558 ( 41) AGTGAGCCGAGATCCCGCCCCTGCACTCCA 1 chr13:20734568-20734723 ( 46) AGTGAGCCAAGATCCCGCCACCGCACTCCA 1 chrX:48413786-48413885 ( 31) ATTGAGCTGAGATCCCACCACTGCACTCCA 1 chrX:48381540-48381639 ( 40) ATTGAGCTGAGATCCCACCACTGCACTCCA 1 chr12:80818146-80818251 ( 58) AGTGAGCCAAGATCCGGCCACTGCACTCCA 1 chr20:5620581-5620720 ( 41) ATTGAGCCGAGATCACACCACTGCACTCCA 1 chr17:2428447-2428557 ( 17) AGTGAGCTGAGATCCTGCCATTGCACTCCA 1 chr2:114289902-114290036 ( 35) AGTAAGCCAAGATCACGCCACTGCACTCCA 1 chr2:40995299-40995401 ( 15) AGTGAGCTGAGATCCCACCACTGCACTTCA 1 chr7:63595365-63595488 ( 33) AGTGAGCTGAGATCTCGCCACCGCACTCCA 1 chr5:27225859-27225999 ( 40) AGTGAGCCAAGATCACTCCACTGCACTCCA 1 chr4:125857533-125857630 ( 56) AGTGAGCCAAGATCTCACCACTGCATTCCA 1 chr20:37458444-37458584 ( 40) AGTGAGCTGAGATTATGCCACTGCACTCCA 1 chr3:12274439-12274554 ( 42) AGTGAACCGAGATTTCACCACTGCACTCCA 1 chr16:89250746-89250874 ( 34) AGTGAGTCAAGATCCCACCTCTGCACTCCA 1 chr6:76544585-76544717 ( 37) AGTAAGCCAAGATCACACCACTGTACTCCA 1 chr2:186537559-186537693 ( 40) AGTGAGCCGAGATGTCGCCACTGCCTTCCA 1 chr19:38243056-38243146 ( 53) AGTGAGCCGAGATCCTGCCATTGCACTCTG 1 chr3:53841451-53841505 ( 16) AGTGAGCTGTGAAGCTGCCACTGCACTCCA 1 chr5:174998771-174998907 ( 23) AGTGATCTGAGATCACGCTGCTGCCCTCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 30 n= 20640 bayes= 8.6858 E= 7.5e-528 207 -1229 -1229 -1229 -1229 -1229 184 -198 -1229 -1229 -1229 207 -257 -1229 187 -1229 207 -1229 -1229 -1229 -357 -1229 187 -357 -1229 190 -1229 -357 -1229 157 -1229 -11 -11 -1229 157 -1229 204 -1229 -1229 -357 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -357 -1229 -1229 204 -1229 181 -271 -257 -76 150 -1229 -99 -1229 171 -371 -99 1 -1229 150 -357 -1229 190 -1229 -357 -1229 190 -1229 -357 198 -371 -371 -357 -1229 184 -1229 -198 -1229 -271 -1229 201 -1229 -1229 193 -1229 -1229 190 -1229 -357 201 -271 -1229 -1229 -1229 184 -1229 -198 -1229 -1229 -1229 207 -1229 190 -1229 -357 -1229 190 -1229 -357 204 -1229 -371 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 30 nsites= 50 E= 7.5e-528 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.940000 0.060000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.960000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.780000 0.000000 0.220000 0.220000 0.000000 0.780000 0.000000 0.980000 0.000000 0.000000 0.020000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.000000 0.980000 0.000000 0.920000 0.040000 0.040000 0.140000 0.740000 0.000000 0.120000 0.000000 0.860000 0.020000 0.120000 0.240000 0.000000 0.740000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.940000 0.020000 0.020000 0.020000 0.000000 0.940000 0.000000 0.060000 0.000000 0.040000 0.000000 0.960000 0.000000 0.000000 1.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.960000 0.040000 0.000000 0.000000 0.000000 0.940000 0.000000 0.060000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.980000 0.000000 0.020000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGAGCCGAGATCCCGCCACTGCACTCCA MEME-5 regular expression -------------------------------------------------------------------------------- AGTGAGC[CT][GA]AGATCCC[GA]CCACTGCACTCCA -------------------------------------------------------------------------------- Time 1192.28 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCTCCCAAGTAGCTAGGACTACAG MEME-6 width = 25 sites = 50 llr = 1639 E-value = 3.3e-478 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 Description -------------------------------------------------------------------------------- Simplified A :::::::aa1:9:::9::a::a:a: pos.-specific C :aa:aaa::::::a:::::9::a:: probability G a::::::::91:a::1aa::::::a matrix T :::a::::::91::a::::1a:::: bits 2.1 * ** * * * * 1.9 ********* *** *** ***** 1.7 *************** *** ***** 1.5 ******************* ***** Relative 1.2 ************************* Entropy 1.0 ************************* (47.3 bits) 0.8 ************************* 0.6 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel GCCTCCCAAGTAGCTAGGACTACAG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------- chr22:28385994-28386304 - 51 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr21:14191097-14191398 - 55 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr19:39608742-39609041 - 57 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr17:28208166-28208467 - 56 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr15:50706109-50706417 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr14:67150160-67150470 - 51 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr14:63320465-63320774 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr13:78849847-78850156 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr12:12864714-12865016 - 55 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr10:95679583-95679889 + 24 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chrY:15091441-15091750 + 26 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr9:87132418-87132725 - 53 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr9:42452954-42453256 - 55 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr9:38095864-38096172 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr8:125333505-125333812 + 25 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr7:113538585-113538894 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr7:99059117-99059397 - 66 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr7:65847313-65847623 + 26 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr6:12099183-12099465 + 12 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr5:136913412-136913719 + 25 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr5:129042999-129043299 + 21 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr5:79717884-79718186 + 22 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcacccgcca chr5:72620731-72621025 + 27 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr5:50877480-50877785 + 24 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr5:50573252-50573555 - 55 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr5:10005167-10005466 - 56 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr4:154968184-154968488 + 23 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr4:147922407-147922708 - 56 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr4:125553522-125553826 - 54 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr4:105448936-105449263 - 43 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr4:54616269-54616579 - 51 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr3:126833773-126834081 - 52 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr3:110741298-110741582 + 31 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr3:88050346-88050652 + 24 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr3:75065216-75065561 + 44 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr3:34913100-34913400 - 56 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr1:145410314-145410612 + 20 9.97e-16 tcctgcctca gcctcccaagtagctaggactacag gcgcccgcca chr1:113842819-113843119 - 56 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GCGCCCGCCA chr1:23219836-23220146 - 51 9.97e-16 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACTACAG GTGCCCGCCA chr22:36389838-36390147 - 51 3.00e-15 TCCTGCCTCA GCCTCCCAAGTAGCTGGGACTACAG GCGCCCGCCA chr20:37368513-37368849 + 40 3.00e-15 tcctgcctca gcctcccaagtagctgggactacag gcgcccgcca chr16:14367797-14368099 - 55 3.00e-15 TCCTGCCTCA GCCTCCCAAGTAGCTGGGACTACAG GCGCCCGCCA chrY:16847094-16847361 - 33 3.00e-15 TCCTGCCTCA GCCTCCCAAGTAGCTAGGATTACAG GCGCCCGCCA chr11:82308029-82308334 - 54 8.81e-15 TCCTGCCTCA GCCTCCCAAGTAGCTAGGAGTACAG GCGCCCGCCA chr10:102753184-10275323 + 15 8.81e-15 tcctgcctcc gcctctcaagtagctaggactacag gcacacgcta chr3:115305404-115305716 - 52 9.90e-15 TCCTGCCTCA GCCTCCCAAGTAGCTAGGACCACAG GCGCCCGCCA chr4:180997022-180997338 - 54 1.09e-14 TCCTGCCTCA GCCTCCCAAGTAGCTGGGATTACAG GCGCCCGCCA chr10:80314191-80314300 + 59 1.72e-13 gcctgcctcg gcctcccaaagtgctaggattacag gcgtgagcca chr16:36669301-36669387 - 14 3.59e-13 GCCCGCCTCG GCCTCCCAAAGTGCTGGGATTACAG GCGTGAGCCA chr19:36601947-36602042 + 52 1.97e-12 tccctcctca gtctcccaaagtgctgggattacag gcgtgagcca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:28385994-28386304 1e-15 50_[-6]_25 chr21:14191097-14191398 1e-15 54_[-6]_21 chr19:39608742-39609041 1e-15 56_[-6]_19 chr17:28208166-28208467 1e-15 55_[-6]_20 chr15:50706109-50706417 1e-15 51_[-6]_24 chr14:67150160-67150470 1e-15 50_[-6]_25 chr14:63320465-63320774 1e-15 51_[-6]_24 chr13:78849847-78850156 1e-15 51_[-6]_24 chr12:12864714-12865016 1e-15 54_[-6]_21 chr10:95679583-95679889 1e-15 23_[+6]_52 chrY:15091441-15091750 1e-15 25_[+6]_50 chr9:87132418-87132725 1e-15 52_[-6]_23 chr9:42452954-42453256 1e-15 54_[-6]_21 chr9:38095864-38096172 1e-15 51_[-6]_24 chr8:125333505-125333812 1e-15 24_[+6]_51 chr7:113538585-113538894 1e-15 51_[-6]_24 chr7:99059117-99059397 1e-15 65_[-6]_10 chr7:65847313-65847623 1e-15 25_[+6]_50 chr6:12099183-12099465 1e-15 11_[+6]_64 chr5:136913412-136913719 1e-15 24_[+6]_51 chr5:129042999-129043299 1e-15 20_[+6]_55 chr5:79717884-79718186 1e-15 21_[+6]_54 chr5:72620731-72621025 1e-15 26_[+6]_49 chr5:50877480-50877785 1e-15 23_[+6]_52 chr5:50573252-50573555 1e-15 54_[-6]_21 chr5:10005167-10005466 1e-15 55_[-6]_20 chr4:154968184-154968488 1e-15 22_[+6]_53 chr4:147922407-147922708 1e-15 55_[-6]_20 chr4:125553522-125553826 1e-15 53_[-6]_22 chr4:105448936-105449263 1e-15 42_[-6]_33 chr4:54616269-54616579 1e-15 50_[-6]_25 chr3:126833773-126834081 1e-15 51_[-6]_24 chr3:110741298-110741582 1e-15 30_[+6]_45 chr3:88050346-88050652 1e-15 23_[+6]_52 chr3:75065216-75065561 1e-15 43_[+6]_32 chr3:34913100-34913400 1e-15 55_[-6]_20 chr1:145410314-145410612 1e-15 19_[+6]_56 chr1:113842819-113843119 1e-15 55_[-6]_20 chr1:23219836-23220146 1e-15 50_[-6]_25 chr22:36389838-36390147 3e-15 50_[-6]_25 chr20:37368513-37368849 3e-15 39_[+6]_36 chr16:14367797-14368099 3e-15 54_[-6]_21 chrY:16847094-16847361 3e-15 32_[-6]_43 chr11:82308029-82308334 8.8e-15 53_[-6]_22 chr10:102753184-10275323 8.8e-15 14_[+6]_11 chr3:115305404-115305716 9.9e-15 51_[-6]_24 chr4:180997022-180997338 1.1e-14 53_[-6]_22 chr10:80314191-80314300 1.7e-13 58_[+6]_17 chr16:36669301-36669387 3.6e-13 13_[-6]_48 chr19:36601947-36602042 2e-12 51_[+6]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCTCCCAAGTAGCTAGGACTACAG width=25 seqs=50 chr22:28385994-28386304 ( 51) GCCTCCCAAGTAGCTAGGACTACAG 1 chr21:14191097-14191398 ( 55) GCCTCCCAAGTAGCTAGGACTACAG 1 chr19:39608742-39609041 ( 57) GCCTCCCAAGTAGCTAGGACTACAG 1 chr17:28208166-28208467 ( 56) GCCTCCCAAGTAGCTAGGACTACAG 1 chr15:50706109-50706417 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr14:67150160-67150470 ( 51) GCCTCCCAAGTAGCTAGGACTACAG 1 chr14:63320465-63320774 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr13:78849847-78850156 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr12:12864714-12865016 ( 55) GCCTCCCAAGTAGCTAGGACTACAG 1 chr10:95679583-95679889 ( 24) GCCTCCCAAGTAGCTAGGACTACAG 1 chrY:15091441-15091750 ( 26) GCCTCCCAAGTAGCTAGGACTACAG 1 chr9:87132418-87132725 ( 53) GCCTCCCAAGTAGCTAGGACTACAG 1 chr9:42452954-42453256 ( 55) GCCTCCCAAGTAGCTAGGACTACAG 1 chr9:38095864-38096172 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr8:125333505-125333812 ( 25) GCCTCCCAAGTAGCTAGGACTACAG 1 chr7:113538585-113538894 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr7:99059117-99059397 ( 66) GCCTCCCAAGTAGCTAGGACTACAG 1 chr7:65847313-65847623 ( 26) GCCTCCCAAGTAGCTAGGACTACAG 1 chr6:12099183-12099465 ( 12) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:136913412-136913719 ( 25) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:129042999-129043299 ( 21) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:79717884-79718186 ( 22) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:72620731-72621025 ( 27) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:50877480-50877785 ( 24) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:50573252-50573555 ( 55) GCCTCCCAAGTAGCTAGGACTACAG 1 chr5:10005167-10005466 ( 56) GCCTCCCAAGTAGCTAGGACTACAG 1 chr4:154968184-154968488 ( 23) GCCTCCCAAGTAGCTAGGACTACAG 1 chr4:147922407-147922708 ( 56) GCCTCCCAAGTAGCTAGGACTACAG 1 chr4:125553522-125553826 ( 54) GCCTCCCAAGTAGCTAGGACTACAG 1 chr4:105448936-105449263 ( 43) GCCTCCCAAGTAGCTAGGACTACAG 1 chr4:54616269-54616579 ( 51) GCCTCCCAAGTAGCTAGGACTACAG 1 chr3:126833773-126834081 ( 52) GCCTCCCAAGTAGCTAGGACTACAG 1 chr3:110741298-110741582 ( 31) GCCTCCCAAGTAGCTAGGACTACAG 1 chr3:88050346-88050652 ( 24) GCCTCCCAAGTAGCTAGGACTACAG 1 chr3:75065216-75065561 ( 44) GCCTCCCAAGTAGCTAGGACTACAG 1 chr3:34913100-34913400 ( 56) GCCTCCCAAGTAGCTAGGACTACAG 1 chr1:145410314-145410612 ( 20) GCCTCCCAAGTAGCTAGGACTACAG 1 chr1:113842819-113843119 ( 56) GCCTCCCAAGTAGCTAGGACTACAG 1 chr1:23219836-23220146 ( 51) GCCTCCCAAGTAGCTAGGACTACAG 1 chr22:36389838-36390147 ( 51) GCCTCCCAAGTAGCTGGGACTACAG 1 chr20:37368513-37368849 ( 40) GCCTCCCAAGTAGCTGGGACTACAG 1 chr16:14367797-14368099 ( 55) GCCTCCCAAGTAGCTGGGACTACAG 1 chrY:16847094-16847361 ( 33) GCCTCCCAAGTAGCTAGGATTACAG 1 chr11:82308029-82308334 ( 54) GCCTCCCAAGTAGCTAGGAGTACAG 1 chr10:102753184-10275323 ( 15) GCCTCTCAAGTAGCTAGGACTACAG 1 chr3:115305404-115305716 ( 52) GCCTCCCAAGTAGCTAGGACCACAG 1 chr4:180997022-180997338 ( 54) GCCTCCCAAGTAGCTGGGATTACAG 1 chr10:80314191-80314300 ( 59) GCCTCCCAAAGTGCTAGGATTACAG 1 chr16:36669301-36669387 ( 14) GCCTCCCAAAGTGCTGGGATTACAG 1 chr19:36601947-36602042 ( 52) GTCTCCCAAAGTGCTGGGATTACAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 22480 bayes= 8.80929 E= 3.3e-478 -1229 -1229 193 -1229 -1229 190 -1229 -357 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 193 -1229 -1229 -1229 190 -1229 -357 -1229 193 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 -1229 -198 -1229 184 -1229 -1229 -1229 -213 198 198 -1229 -1229 -198 -1229 -1229 193 -1229 -1229 193 -1229 -1229 -1229 -1229 -1229 207 189 -1229 -113 -1229 -1229 -1229 193 -1229 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 175 -371 -125 -1229 -371 -1229 204 207 -1229 -1229 -1229 -1229 193 -1229 -1229 207 -1229 -1229 -1229 -1229 -1229 193 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 50 E= 3.3e-478 0.000000 0.000000 1.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 0.060000 0.940000 0.940000 0.000000 0.000000 0.060000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.880000 0.000000 0.120000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.880000 0.020000 0.100000 0.000000 0.020000 0.000000 0.980000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCTCCCAAGTAGCTAGGACTACAG MEME-6 regular expression -------------------------------------------------------------------------------- GCCTCCCAAGTAGCTAGGACTACAG -------------------------------------------------------------------------------- Time 1389.74 secs. ******************************************************************************** ******************************************************************************** MOTIF AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 width = 31 sites = 50 llr = 2029 E-value = 2.0e-633 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 Description -------------------------------------------------------------------------------- Simplified A a:::1:a::::::a:::a::::a:a::1::: pos.-specific C :::9::::a:::a::::::a9:::::a9a:a probability G :aa:9a:a:::a::a:a:a::a:a:::::a: matrix T :::1:::::aa::::a::::1::::a::::: bits 2.1 * * ** * * * ** 1.9 *** ********* **** ****** *** 1.7 **** *************** ****** *** 1.5 ******************************* Relative 1.2 ******************************* Entropy 1.0 ******************************* (58.5 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr19_KI270867v1_alt:188 + 5 3.55e-19 cggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr6_GL000253v2_alt:9777 + 20 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr22:34799179-34799292 - 58 3.55e-19 TGAACCCAGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr21:40585323-40585449 + 12 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr20:39709002-39709117 + 7 3.55e-19 ccggga aggcggagcttgcagtgagccgagatcccgc cactgcactc chr19:41501337-41501438 - 67 3.55e-19 GGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr18:67506062-67506178 + 7 3.55e-19 cccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr18:32752778-32752875 - 65 3.55e-19 GG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr18:27014348-27014483 + 17 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr17:26690618-26690723 - 60 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr16:84848873-84849007 + 24 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr16:49002177-49002284 + 3 3.55e-19 gg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr15:72443997-72444109 + 7 3.55e-19 cccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr15:45277857-45277989 + 16 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr12:56145973-56146091 + 8 3.55e-19 acccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr11:133433157-13343327 + 17 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr11:113239499-11323961 - 57 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr10:58719507-58719633 - 46 3.55e-19 TGCCCAAATG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chrX:105542742-105542839 - 51 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr9:78256524-78256664 - 48 3.55e-19 TGAACCCGGA AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCATTC chr9:14225342-14225486 + 21 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr8:12911843-12911955 - 56 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr7:123113980-123114107 + 19 3.55e-19 tgaacctggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr6:151650294-151650432 - 50 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr4:166490888-166490987 - 64 3.55e-19 CCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr4:156891185-156891309 + 11 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr4:109418181-109418318 - 51 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr4:33943216-33943310 + 7 3.55e-19 cccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr2:212562033-212562151 + 8 3.55e-19 acccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr2:142870245-142870407 + 13 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr2:118148563-118148706 + 21 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr2:19952781-19952913 - 51 3.55e-19 TGAACCCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr1:244914291-244914406 + 7 3.55e-19 cccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr1:231968484-231968621 + 18 3.55e-19 tgaacccggg aggcggagcttgcagtgagccgagatcccgc cactgcactc chr7:88736500-88736641 + 20 1.00e-18 tgaacccggg aggcagagcttgcagtgagccgagatcccgc cactgcactc chr1:201771159-201771255 + 8 1.00e-18 acccggg aggcagagcttgcagtgagccgagatcccgc cactgcactc chr20:9103026-9103132 - 55 1.64e-18 TGAACCCGGG AGGTGGAGCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr2:40107195-40107304 + 9 1.64e-18 aacccggg aggtggagcttgcagtgagccgagatcccgc cactgcactc chr10:68874582-68874685 + 6 2.29e-18 ccggg aggcggagcttgcagtgagtcgagatcccgc cactgcactc chr5:150933093-150933198 + 8 2.29e-18 acccggg aggcggagcttgcagtgagtcgagatcccgc cactgcactc chr3_KI270784v1_alt:1637 + 6 3.58e-18 ccggg aggcggagcttgcagtgagccgagatcccgt cactgcactc chr2:15501584-15501684 - 65 3.58e-18 CCGGG AGGCGGAGCTTGCAGTGAGCCGAGATCCTGC CACTGCACTC chr10:7499879-7500000 - 55 3.93e-18 TGAACCCGGG AGGCGGACCTTGCAGTGAGCCGAGATCCCGC CACTGCACTC chr9:67384950-67385071 - 46 4.62e-18 TGAGCCCAGG AGGCAGAGCTTGCAGTGAGCTGAGATCCCGC CACTGCACTC chr10:96731316-96731453 + 26 5.79e-18 tgaacccagg aggcggagcttgcagtgagctgagatcacgc cactgcactc chr3:56132525-56132645 + 30 5.79e-18 tgaacccagg aggcggagcttgcagtgagctgagatcacgc cactgcactc chr4:177492573-177492676 - 57 8.42e-18 TGAACCCAGG AGGTGGAGCTTGCAATGAGCCGAGATCCCGC CACTGCACTC chr8:33482680-33482777 - 66 1.27e-17 G AGGCAGAGCTTGCGGTGAGCCGAGATCCCGC CACTGCACTC chr16:4121202-4121294 + 6 1.64e-17 ccagg aggcggagcttgcaatgagccgagatctcgc cactgcactc chr3:141782690-141782828 + 24 3.46e-17 tcaacccagg aggcggagcttgcagtgagctgagatcacac cactgcactc -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr19_KI270867v1_alt:188 3.5e-19 4_[+7]_65 chr6_GL000253v2_alt:9777 3.5e-19 19_[+7]_50 chr22:34799179-34799292 3.5e-19 57_[-7]_12 chr21:40585323-40585449 3.5e-19 11_[+7]_58 chr20:39709002-39709117 3.5e-19 6_[+7]_63 chr19:41501337-41501438 3.5e-19 66_[-7]_3 chr18:67506062-67506178 3.5e-19 6_[+7]_63 chr18:32752778-32752875 3.5e-19 64_[-7]_2 chr18:27014348-27014483 3.5e-19 16_[+7]_53 chr17:26690618-26690723 3.5e-19 59_[-7]_10 chr16:84848873-84849007 3.5e-19 23_[+7]_46 chr16:49002177-49002284 3.5e-19 2_[+7]_67 chr15:72443997-72444109 3.5e-19 6_[+7]_63 chr15:45277857-45277989 3.5e-19 15_[+7]_54 chr12:56145973-56146091 3.5e-19 7_[+7]_62 chr11:133433157-13343327 3.5e-19 16_[+7]_53 chr11:113239499-11323961 3.5e-19 56_[-7]_13 chr10:58719507-58719633 3.5e-19 45_[-7]_24 chrX:105542742-105542839 3.5e-19 50_[-7]_16 chr9:78256524-78256664 3.5e-19 47_[-7]_22 chr9:14225342-14225486 3.5e-19 20_[+7]_49 chr8:12911843-12911955 3.5e-19 55_[-7]_14 chr7:123113980-123114107 3.5e-19 18_[+7]_51 chr6:151650294-151650432 3.5e-19 49_[-7]_20 chr4:166490888-166490987 3.5e-19 63_[-7]_5 chr4:156891185-156891309 3.5e-19 10_[+7]_59 chr4:109418181-109418318 3.5e-19 50_[-7]_19 chr4:33943216-33943310 3.5e-19 6_[+7]_57 chr2:212562033-212562151 3.5e-19 7_[+7]_62 chr2:142870245-142870407 3.5e-19 12_[+7]_57 chr2:118148563-118148706 3.5e-19 20_[+7]_49 chr2:19952781-19952913 3.5e-19 50_[-7]_19 chr1:244914291-244914406 3.5e-19 6_[+7]_63 chr1:231968484-231968621 3.5e-19 17_[+7]_52 chr7:88736500-88736641 1e-18 19_[+7]_50 chr1:201771159-201771255 1e-18 7_[+7]_58 chr20:9103026-9103132 1.6e-18 54_[-7]_15 chr2:40107195-40107304 1.6e-18 8_[+7]_61 chr10:68874582-68874685 2.3e-18 5_[+7]_64 chr5:150933093-150933198 2.3e-18 7_[+7]_62 chr3_KI270784v1_alt:1637 3.6e-18 5_[+7]_63 chr2:15501584-15501684 3.6e-18 64_[-7]_5 chr10:7499879-7500000 3.9e-18 54_[-7]_15 chr9:67384950-67385071 4.6e-18 45_[-7]_24 chr10:96731316-96731453 5.8e-18 25_[+7]_44 chr3:56132525-56132645 5.8e-18 29_[+7]_40 chr4:177492573-177492676 8.4e-18 56_[-7]_13 chr8:33482680-33482777 1.3e-17 65_[-7]_1 chr16:4121202-4121294 1.6e-17 5_[+7]_56 chr3:141782690-141782828 3.5e-17 23_[+7]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC width=31 seqs=50 chr19_KI270867v1_alt:188 ( 5) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr6_GL000253v2_alt:9777 ( 20) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr22:34799179-34799292 ( 58) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr21:40585323-40585449 ( 12) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr20:39709002-39709117 ( 7) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr19:41501337-41501438 ( 67) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr18:67506062-67506178 ( 7) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr18:32752778-32752875 ( 65) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr18:27014348-27014483 ( 17) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr17:26690618-26690723 ( 60) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr16:84848873-84849007 ( 24) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr16:49002177-49002284 ( 3) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr15:72443997-72444109 ( 7) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr15:45277857-45277989 ( 16) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr12:56145973-56146091 ( 8) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr11:133433157-13343327 ( 17) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr11:113239499-11323961 ( 57) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr10:58719507-58719633 ( 46) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chrX:105542742-105542839 ( 51) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr9:78256524-78256664 ( 48) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr9:14225342-14225486 ( 21) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr8:12911843-12911955 ( 56) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr7:123113980-123114107 ( 19) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr6:151650294-151650432 ( 50) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr4:166490888-166490987 ( 64) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr4:156891185-156891309 ( 11) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr4:109418181-109418318 ( 51) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr4:33943216-33943310 ( 7) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr2:212562033-212562151 ( 8) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr2:142870245-142870407 ( 13) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr2:118148563-118148706 ( 21) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr2:19952781-19952913 ( 51) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr1:244914291-244914406 ( 7) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr1:231968484-231968621 ( 18) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr7:88736500-88736641 ( 20) AGGCAGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr1:201771159-201771255 ( 8) AGGCAGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr20:9103026-9103132 ( 55) AGGTGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr2:40107195-40107304 ( 9) AGGTGGAGCTTGCAGTGAGCCGAGATCCCGC 1 chr10:68874582-68874685 ( 6) AGGCGGAGCTTGCAGTGAGTCGAGATCCCGC 1 chr5:150933093-150933198 ( 8) AGGCGGAGCTTGCAGTGAGTCGAGATCCCGC 1 chr3_KI270784v1_alt:1637 ( 6) AGGCGGAGCTTGCAGTGAGCCGAGATCCCGT 1 chr2:15501584-15501684 ( 65) AGGCGGAGCTTGCAGTGAGCCGAGATCCTGC 1 chr10:7499879-7500000 ( 55) AGGCGGACCTTGCAGTGAGCCGAGATCCCGC 1 chr9:67384950-67385071 ( 46) AGGCAGAGCTTGCAGTGAGCTGAGATCCCGC 1 chr10:96731316-96731453 ( 26) AGGCGGAGCTTGCAGTGAGCTGAGATCACGC 1 chr3:56132525-56132645 ( 30) AGGCGGAGCTTGCAGTGAGCTGAGATCACGC 1 chr4:177492573-177492676 ( 57) AGGTGGAGCTTGCAATGAGCCGAGATCCCGC 1 chr8:33482680-33482777 ( 66) AGGCAGAGCTTGCGGTGAGCCGAGATCCCGC 1 chr16:4121202-4121294 ( 6) AGGCGGAGCTTGCAATGAGCCGAGATCTCGC 1 chr3:141782690-141782828 ( 24) AGGCGGAGCTTGCAGTGAGCTGAGATCACAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 20272 bayes= 9.15086 E= 2.0e-633 207 -1229 -1229 -1229 -1229 -1229 193 -1229 -1229 -1229 193 -1229 -1229 184 -1229 -198 -157 -1229 181 -1229 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 -371 190 -1229 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 -1229 -1229 207 -1229 -1229 193 -1229 -1229 193 -1229 -1229 204 -1229 -371 -1229 -257 -1229 187 -1229 -1229 -1229 -1229 207 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 -1229 193 -1229 -1229 187 -1229 -257 -1229 181 -1229 -157 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 -1229 193 -1229 207 -1229 -1229 -1229 -1229 -1229 -1229 207 -1229 193 -1229 -1229 -198 181 -1229 -357 -1229 190 -1229 -357 -357 -1229 190 -1229 -1229 190 -1229 -357 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 2.0e-633 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.940000 0.000000 0.060000 0.080000 0.000000 0.920000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.020000 0.980000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.040000 0.000000 0.960000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.920000 0.000000 0.080000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.060000 0.920000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.020000 0.000000 0.980000 0.000000 0.000000 0.980000 0.000000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC MEME-7 regular expression -------------------------------------------------------------------------------- AGGCGGAGCTTGCAGTGAGCCGAGATCCCGC -------------------------------------------------------------------------------- Time 1574.56 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 width = 31 sites = 46 llr = 1205 E-value = 5.4e-291 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 Description -------------------------------------------------------------------------------- Simplified A :::11::::::::18:9:4182::::4::1: pos.-specific C ::::::1::1:::1:::6::::18:618181 probability G ::1:11::1::::7:9115918::::5::1: matrix T 99888899999a921::3::::91a3:1819 bits 2.1 1.9 * * 1.7 ** * 1.5 ** ** *** * * * * Relative 1.2 ** ********** ** * **** * * Entropy 1.0 ************* *** ****** ** * (37.8 bits) 0.8 ************* *** ******** **** 0.6 ************************** **** 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT consensus T TA TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr11:113239499-11323961 + 3 1.36e-19 tt tttttttttttttgagacggagtctcgctct gtcgcccagg chr10:29407123-29407216 - 62 1.36e-19 T TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT GTCGCCCGGA chr8:12911843-12911955 + 2 1.36e-19 t tttttttttttttgagacggagtctcgctct gtcgcccagg chr3:159201627-159201752 + 1 1.36e-19 . tttttttttttttgagacggagtctcgctct gtcgcccagg chr10:7499879-7500000 + 1 2.59e-19 . tttttttttttttgagacagagtctcgctct gtcgcccagg chr12:108075432-10807549 + 3 9.65e-19 tt tttttttttttttgagatggagtctcgctct gttgcccagg chr11:19449316-19449411 - 63 9.65e-19 TT TTTTTTTTTTTTTGAGATGGAGTCTCGCTCT GTCGCTCAGG chr20:9103026-9103132 + 1 6.69e-18 . tttttttttttttgagacggagtcttgcttt gtctcccagg chr2:188165950-188166023 + 2 6.18e-17 t ttttttttttttggagacggagtctcactct gtcgcccagg chr15:39868931-39869019 - 56 1.48e-16 TT TTTTTTTTTTTTTGAGACAGAATTTTGCTCT TGTTGCCTAG chr4:42619049-42619159 + 1 3.23e-16 . ttgttttttttttgagatggagtctcattct gtcgtccagg chr19:671532-671594 + 3 6.25e-16 tt ttgtgttttttttgagacagagtctcactct gtcacccggg chr22:50647065-50647135 - 40 8.11e-16 . TTTTTTTTTTTTTTAGACAGAGTCTTAATCT GTCACCCAGG chr17:80285977-80286043 + 1 1.93e-15 . ttgttttatttttgagatggagtctcactct gtcgcccagg chr4:177492573-177492676 + 3 1.93e-15 tt tttttttttttttgagatggcgttttgctct gtcgcccagg chr7:101302231-101302325 - 45 6.14e-15 TTAATTTTAA TTTTTTTTTTTTTGAGATGGATTCTAACTCT GTCGCCCAGC chr2:195546375-195546451 + 2 2.76e-13 t ttttgttgtttttgagaccaagtctcactct gttgcccagg chr1:1498707-1498783 + 1 3.04e-13 . tgtttgtttttttcagacggagtctcactcc gtcgcccagg chr11:61251690-61251760 - 39 4.93e-13 T TTTTTTTTTCTTTGAGCTGGAGTCTCTCTGT GTCGCCCAGG chr22:34799179-34799292 + 4 5.97e-13 ttt tttttttttccttgagaaggagtctctctct gtcgcctagg chr12:34211977-34212058 - 36 6.57e-13 TTTTTTTTTT TTTTTTTTTTTTTTTGAGACAGTCTTCCTCT GTTGCCCAGG chr2:227768483-227768553 - 40 8.72e-13 . TTTTTTTTTCTTTCTGACGATGTCTCACTCT GTCACCCAGG chr19:39543119-39543186 - 31 1.15e-12 TCTTTT TTTTTTCTTTTTCTAGACAGAATCTCACTGT GTCACCCAGG chr3:123580103-123580196 - 46 1.39e-12 TTTCTTTTTT CTTTTTTTTTTTTGACACAGGGCCTTACTCT GTTGCCCAGG chr1:171854491-171854565 + 4 1.39e-12 ttt ttcctttttttctgagacaaagtctcgctct tgtcgcccag chr7:12035087-12035156 - 34 1.52e-12 TTCTT TTTTTTTTTTTTTTTGGCAGCATCTTGTTCT GTTGCCCAGA chr14:63612329-63612406 + 3 1.66e-12 tt tttttttttttttgagacggaatctcctctg tcgcccgggc chr8:77725276-77725367 - 54 2.00e-12 TTCTTTT CTTTCTTTTTTTTGGGATGGAGTCTTGTTCT GTTGCTCTGT chr2:239933504-239933585 + 18 2.39e-12 ttgttttttt gttttgttttgttttgacggaatctcgctct gtcacccagg chr9:6429412-6429480 + 8 2.86e-12 ttttttg tttctgtttcttttagacagagtcttgcact gtcatgcagg chr1:1446845-1446921 + 1 3.13e-12 . tgtttgttgttttcagacggagtctcactcc gtcgcccagg chr5:22954352-22954436 - 39 5.79e-12 TATTTTATTT TATTTTTTTTTTTTTGAGGGAGTTTCGCGCT CTCCCCCAGG chr4:69752231-69752302 + 10 5.79e-12 ttttctttt ttaaatttgtttagagacagagtcttgctct ttcgcccagg chr12:12219067-12219133 - 36 1.75e-11 . TTTTATTGTATTTGAGATGGAGCCTTGCTGT GTTGCTCAGA chr7:95183872-95183940 + 2 2.65e-11 t tttattttatttttaaatggagtctcaccat gtcacccagg chr2:120016659-120016722 + 2 2.87e-11 t ttgttctttttttgatgtagagtctcagtct cactcaggtt chr17:11999926-12000000 + 8 3.97e-11 ttttgtt gttgttgttgtttgagacagaatcttgctct gttgcccaat chr3:46544422-46544490 - 31 5.92e-11 TTTTTGT TTTGTTTTGTTTTGTTCAAGAGTCTTGCTCT GTCACCCAGG chr2:40995299-40995401 - 56 1.02e-10 TTATTTTTAT TTTTAAATTTTTTTCGACAGAGTATTGCTCT GTCACCCAGG chr19:30202566-30202642 + 10 1.51e-10 tttttcttt ttctttttcttttaagatggagactagcttt gtcacccagg chr2:31804882-31804928 - 9 9.45e-10 TTTTTTT TTTTTTTTTTTTTGAGACAGTGCTCTGTCTC CCAGGCAT chrY:10779489-10779561 + 2 1.77e-09 t tctattccttttttcgacaggatctcactct gtcatacagg chr19:7064951-7065038 - 48 2.33e-09 TTTATTATT TATTTTTATTTTTGAGACCAAGTCTCCTCTG TCACCCAGGC chr1:151910435-151910523 - 50 2.33e-09 TTTTTAAT TTATTGCTTTTTTGAGATGGGGCATCAGTAT GTTGCCCAGG chr5:142201948-142202174 + 35 2.66e-09 tggctaattt ttgtatttttgtaaagacagggtttcaccat gttggccagg chr19:38243056-38243146 + 11 4.32e-08 ttattctttt ttttgtttgtttgagaggaaggtcttgctct gtggcccagg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr11:113239499-11323961 1.4e-19 2_[+8]_67 chr10:29407123-29407216 1.4e-19 61_[-8]_1 chr8:12911843-12911955 1.4e-19 1_[+8]_68 chr3:159201627-159201752 1.4e-19 [+8]_69 chr10:7499879-7500000 2.6e-19 [+8]_69 chr12:108075432-10807549 9.7e-19 2_[+8]_29 chr11:19449316-19449411 9.7e-19 62_[-8]_2 chr20:9103026-9103132 6.7e-18 [+8]_69 chr2:188165950-188166023 6.2e-17 1_[+8]_41 chr15:39868931-39869019 1.5e-16 55_[-8]_2 chr4:42619049-42619159 3.2e-16 [+8]_69 chr19:671532-671594 6.2e-16 2_[+8]_29 chr22:50647065-50647135 8.1e-16 39_[-8] chr17:80285977-80286043 1.9e-15 [+8]_35 chr4:177492573-177492676 1.9e-15 2_[+8]_67 chr7:101302231-101302325 6.1e-15 44_[-8]_19 chr2:195546375-195546451 2.8e-13 1_[+8]_44 chr1:1498707-1498783 3e-13 [+8]_45 chr11:61251690-61251760 4.9e-13 38_[-8]_1 chr22:34799179-34799292 6e-13 3_[+8]_66 chr12:34211977-34212058 6.6e-13 35_[-8]_15 chr2:227768483-227768553 8.7e-13 39_[-8] chr19:39543119-39543186 1.2e-12 30_[-8]_6 chr3:123580103-123580196 1.4e-12 45_[-8]_17 chr1:171854491-171854565 1.4e-12 3_[+8]_40 chr7:12035087-12035156 1.5e-12 33_[-8]_5 chr14:63612329-63612406 1.7e-12 2_[+8]_44 chr8:77725276-77725367 2e-12 53_[-8]_7 chr2:239933504-239933585 2.4e-12 17_[+8]_33 chr9:6429412-6429480 2.9e-12 7_[+8]_30 chr1:1446845-1446921 3.1e-12 [+8]_45 chr5:22954352-22954436 5.8e-12 38_[-8]_15 chr4:69752231-69752302 5.8e-12 9_[+8]_31 chr12:12219067-12219133 1.8e-11 35_[-8] chr7:95183872-95183940 2.6e-11 1_[+8]_36 chr2:120016659-120016722 2.9e-11 1_[+8]_31 chr17:11999926-12000000 4e-11 7_[+8]_36 chr3:46544422-46544490 5.9e-11 30_[-8]_7 chr2:40995299-40995401 1e-10 55_[-8]_14 chr19:30202566-30202642 1.5e-10 9_[+8]_36 chr2:31804882-31804928 9.4e-10 8_[-8]_7 chrY:10779489-10779561 1.8e-09 1_[+8]_40 chr19:7064951-7065038 2.3e-09 47_[-8]_9 chr1:151910435-151910523 2.3e-09 49_[-8]_8 chr5:142201948-142202174 2.7e-09 34_[+8]_35 chr19:38243056-38243146 4.3e-08 10_[+8]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT width=31 seqs=46 chr11:113239499-11323961 ( 3) TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT 1 chr10:29407123-29407216 ( 62) TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT 1 chr8:12911843-12911955 ( 2) TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT 1 chr3:159201627-159201752 ( 1) TTTTTTTTTTTTTGAGACGGAGTCTCGCTCT 1 chr10:7499879-7500000 ( 1) TTTTTTTTTTTTTGAGACAGAGTCTCGCTCT 1 chr12:108075432-10807549 ( 3) TTTTTTTTTTTTTGAGATGGAGTCTCGCTCT 1 chr11:19449316-19449411 ( 63) TTTTTTTTTTTTTGAGATGGAGTCTCGCTCT 1 chr20:9103026-9103132 ( 1) TTTTTTTTTTTTTGAGACGGAGTCTTGCTTT 1 chr2:188165950-188166023 ( 2) TTTTTTTTTTTTGGAGACGGAGTCTCACTCT 1 chr15:39868931-39869019 ( 56) TTTTTTTTTTTTTGAGACAGAATTTTGCTCT 1 chr4:42619049-42619159 ( 1) TTGTTTTTTTTTTGAGATGGAGTCTCATTCT 1 chr19:671532-671594 ( 3) TTGTGTTTTTTTTGAGACAGAGTCTCACTCT 1 chr22:50647065-50647135 ( 40) TTTTTTTTTTTTTTAGACAGAGTCTTAATCT 1 chr17:80285977-80286043 ( 1) TTGTTTTATTTTTGAGATGGAGTCTCACTCT 1 chr4:177492573-177492676 ( 3) TTTTTTTTTTTTTGAGATGGCGTTTTGCTCT 1 chr7:101302231-101302325 ( 45) TTTTTTTTTTTTTGAGATGGATTCTAACTCT 1 chr2:195546375-195546451 ( 2) TTTTGTTGTTTTTGAGACCAAGTCTCACTCT 1 chr1:1498707-1498783 ( 1) TGTTTGTTTTTTTCAGACGGAGTCTCACTCC 1 chr11:61251690-61251760 ( 39) TTTTTTTTTCTTTGAGCTGGAGTCTCTCTGT 1 chr22:34799179-34799292 ( 4) TTTTTTTTTCCTTGAGAAGGAGTCTCTCTCT 1 chr12:34211977-34212058 ( 36) TTTTTTTTTTTTTTTGAGACAGTCTTCCTCT 1 chr2:227768483-227768553 ( 40) TTTTTTTTTCTTTCTGACGATGTCTCACTCT 1 chr19:39543119-39543186 ( 31) TTTTTTCTTTTTCTAGACAGAATCTCACTGT 1 chr3:123580103-123580196 ( 46) CTTTTTTTTTTTTGACACAGGGCCTTACTCT 1 chr1:171854491-171854565 ( 4) TTCCTTTTTTTCTGAGACAAAGTCTCGCTCT 1 chr7:12035087-12035156 ( 34) TTTTTTTTTTTTTTTGGCAGCATCTTGTTCT 1 chr14:63612329-63612406 ( 3) TTTTTTTTTTTTTGAGACGGAATCTCCTCTG 1 chr8:77725276-77725367 ( 54) CTTTCTTTTTTTTGGGATGGAGTCTTGTTCT 1 chr2:239933504-239933585 ( 18) GTTTTGTTTTGTTTTGACGGAATCTCGCTCT 1 chr9:6429412-6429480 ( 8) TTTCTGTTTCTTTTAGACAGAGTCTTGCACT 1 chr1:1446845-1446921 ( 1) TGTTTGTTGTTTTCAGACGGAGTCTCACTCC 1 chr5:22954352-22954436 ( 39) TATTTTTTTTTTTTTGAGGGAGTTTCGCGCT 1 chr4:69752231-69752302 ( 10) TTAAATTTGTTTAGAGACAGAGTCTTGCTCT 1 chr12:12219067-12219133 ( 36) TTTTATTGTATTTGAGATGGAGCCTTGCTGT 1 chr7:95183872-95183940 ( 2) TTTATTTTATTTTTAAATGGAGTCTCACCAT 1 chr2:120016659-120016722 ( 2) TTGTTCTTTTTTTGATGTAGAGTCTCAGTCT 1 chr17:11999926-12000000 ( 8) GTTGTTGTTGTTTGAGACAGAATCTTGCTCT 1 chr3:46544422-46544490 ( 31) TTTGTTTTGTTTTGTTCAAGAGTCTTGCTCT 1 chr2:40995299-40995401 ( 56) TTTTAAATTTTTTTCGACAGAGTATTGCTCT 1 chr19:30202566-30202642 ( 10) TTCTTTTTCTTTTAAGATGGAGACTAGCTTT 1 chr2:31804882-31804928 ( 9) TTTTTTTTTTTTTGAGACAGTGCTCTGTCTC 1 chrY:10779489-10779561 ( 2) TCTATTCCTTTTTTCGACAGGATCTCACTCT 1 chr19:7064951-7065038 ( 48) TATTTTTATTTTTGAGACCAAGTCTCCTCTG 1 chr1:151910435-151910523 ( 50) TTATTGCTTTTTTGAGATGGGGCATCAGTAT 1 chr5:142201948-142202174 ( 35) TTGTATTTTTGTAAAGACAGGGTTTCACCAT 1 chr19:38243056-38243146 ( 11) TTTTGTTTGTTTGAGAGGAAGGTCTTGCTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 20272 bayes= 10.674 E= 5.4e-291 -1217 -259 -259 194 -245 -359 -259 191 -245 -259 -127 176 -186 -259 -259 184 -145 -359 -201 180 -345 -359 -127 184 -345 -201 -359 191 -245 -359 -259 191 -345 -359 -159 187 -345 -159 -359 187 -1217 -359 -259 198 -1217 -359 -1217 204 -245 -359 -259 191 -186 -201 131 -13 172 -259 -259 -86 -245 -359 176 -245 191 -259 -201 -1217 -245 121 -201 25 80 -259 105 -1217 -113 -359 173 -1217 176 -259 -127 -245 -64 -1217 165 -345 -345 -159 -1217 191 -245 169 -1217 -113 -1217 -359 -1217 204 -245 121 -1217 55 64 -201 99 -245 -345 162 -259 -86 -345 -127 -359 184 -186 154 -201 -113 -1217 -201 -259 191 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 46 E= 5.4e-291 0.000000 0.043478 0.043478 0.913043 0.043478 0.021739 0.043478 0.891304 0.043478 0.043478 0.108696 0.804348 0.065217 0.043478 0.043478 0.847826 0.086957 0.021739 0.065217 0.826087 0.021739 0.021739 0.108696 0.847826 0.021739 0.065217 0.021739 0.891304 0.043478 0.021739 0.043478 0.891304 0.021739 0.021739 0.086957 0.869565 0.021739 0.086957 0.021739 0.869565 0.000000 0.021739 0.043478 0.934783 0.000000 0.021739 0.000000 0.978261 0.043478 0.021739 0.043478 0.891304 0.065217 0.065217 0.652174 0.217391 0.782609 0.043478 0.043478 0.130435 0.043478 0.021739 0.891304 0.043478 0.891304 0.043478 0.065217 0.000000 0.043478 0.608696 0.065217 0.282609 0.413043 0.043478 0.543478 0.000000 0.108696 0.021739 0.869565 0.000000 0.804348 0.043478 0.108696 0.043478 0.152174 0.000000 0.826087 0.021739 0.021739 0.086957 0.000000 0.891304 0.043478 0.847826 0.000000 0.108696 0.000000 0.021739 0.000000 0.978261 0.043478 0.608696 0.000000 0.347826 0.369565 0.065217 0.521739 0.043478 0.021739 0.804348 0.043478 0.130435 0.021739 0.108696 0.021739 0.847826 0.065217 0.760870 0.065217 0.108696 0.000000 0.065217 0.043478 0.891304 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTGAGACRGAGTCTYRCTCT MEME-8 regular expression -------------------------------------------------------------------------------- TTTTTTTTTTTTT[GT]AGA[CT][GA]GAGTCT[CT][GA]CTCT -------------------------------------------------------------------------------- Time 1747.33 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 width = 32 sites = 50 llr = 1689 E-value = 1.2e-484 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :::4:::::::6:1:a:1::1:a::1:a1::1 pos.-specific C 9:7:a:91::9:99a:::a:::::1:9::::: probability G ::15::1:a::3::::98::99:a19::9:a9 matrix T :a2::a:9:a111::::1:9::::8::::a:: bits 2.1 * * 1.9 * * ** * * * * * 1.7 * ** *** *** ** ** * * *** 1.5 * ******* * *** *** ** *** *** Relative 1.2 ** ******* ***** ************** Entropy 1.0 ** ******* ******************** (48.7 bits) 0.8 *** ******* ******************** 0.6 ******************************** 0.4 ******************************** 0.2 ******************************** 0.0 -------------------------------- Multilevel CTCGCTCTGTCACCCAGGCTGGAGTGCAGTGG consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------------- chrY:11294512-11294580 + 21 1.61e-19 tcgagaggat ctcactctgtcacccaggctggagtgcagtgg cagtatctca chr1:211811793-211811867 - 21 1.61e-19 TAGGCAGAGT CTCACTCTGTCACCCAGGCTGGAGTGCAGTGG CGGGATGGCA chr14:49491734-49491876 + 9 3.39e-19 gacggagt ctcgctctgtcgcccaggctggagtgcagtgg cgggatctcg chr13:66609946-66610081 + 23 3.39e-19 gagacggagt ctcgctctgtcgcccaggctggagtgcagtgg cgagatctcg chrX:153022090-153022227 - 48 3.39e-19 GAGACGGAGT CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG CGGGATCTCG chr8:4241697-4241840 + 14 3.39e-19 gagacggagt ctcgctctgtcgcccaggctggagtgcagtgg cgtgatctca chr6:88152107-88152240 - 50 3.39e-19 GAGACGGAGT CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG CGGGATCTCG chr2:137581646-137581785 - 53 3.39e-19 GAGACGGAGT CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG CGGGATCTCG chr17:7493921-7493984 - 15 4.85e-19 TTTAAGAAGT CTTGCTCTGTCACCCAGGCTGGAGTGCAGTGG CGGGAATCTC chr14:32081424-32081571 - 60 9.39e-19 AGAAGGAGT CTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGG CGCGATCTCG chr12:116051249-11605130 - 12 1.85e-18 GAGACAGAGT CTCGCTCTGTCATCCAGGCTGGAGTGCAGTGG TGGGATCTCG chr8:40903481-40903538 - 14 5.99e-18 GAGACAGAGT CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGG TGGAGTCTCG chrY:11032208-11032271 + 16 6.70e-18 ttgacaggat ctcactctgtcacccaggctggtgtgcagtgg cagaatctct chr12:78256316-78256447 + 18 8.67e-18 gagacagagt cttgctctgtcacccaggctagagtgcagtgg tgtgatctcg chr16_KI270728v1_random: - 48 9.96e-18 GAGACGGAGT CTCGCTCTGTCACCCAGGCTTGAGTGCAGTGG CGGGATCTCG chrY:10979699-10979767 + 21 9.96e-18 ttgagagtac ctcgctctgtcacccagcctggagtgcagtgg cagaaattca chr2:220822890-220823010 - 51 1.42e-17 GAGACGGAGT CTCGCTCTGTCACCCAGGCGGGAGTGCAGTGG CGAGATCCCC chr7:56981467-56981591 - 56 1.57e-17 GAGACGGATT CTCACTCTGTCACCCAGGCTGGAGTGCGGTGG CGAGATCTCA chr7:40248578-40248640 + 18 2.10e-17 gagatggaat cttgctctgttgcccaggctggagtgcagtgg tgagatcttg chr15:33249309-33249446 + 23 3.49e-17 gagatggagt cgcgctctgtcgcccaggctggagtgcagtgg tgagatctcg chr7:107797740-107797807 + 21 4.76e-17 gagacggagt cttgctctgtcgcccaggctggagtgtagtgg cgagatctcg chr9:41801900-41802022 - 55 5.83e-17 GATAAGGAGT CTGGCTCTGTCGTCCAGGCTGGAGTGCAGTGG CGGGATCTCA chr13:95346471-95346578 + 22 6.70e-17 gagacgtagt ctcgctctgttgcccaggctggagtgcaatgg tgatctcggc chr4_GL000008v2_random:2 - 17 8.25e-17 GACAGGAT GTCACTCTGTCACCCAGTCTGGAGTGCAGTGG CAGAATCCCA chr20:26078445-26078511 - 21 1.07e-16 AGATGGGGGT CTCACTCTGTCCCCCAGGCTGGAGTGGAGTGG TGAGGTCTAC chr20:25777376-25777441 + 15 1.07e-16 agatgggggt ctcactctgtcccccaggctggagtggagtgg tgaggtctag chr19:45802816-45802934 + 22 1.19e-16 gagatggagt ctggctctgtcgcccaggctgaagtgcagtgg ctcactgaaa chr7:66553240-66553303 - 13 2.09e-16 GAGACGGAGT CTAGCTCTGTCACCCAGGCTGTAGTGCAGTGG CGGGATCTCG chrY:10649762-10649826 + 17 2.47e-16 ttgaaaggat ctgactctgtcacacaggctggagggcagtgg aagaatctca chrY:10631330-10631394 + 17 2.47e-16 ttgaaaggat ctgactctgtcacacaggctggagggcagtgg aagaatctca chr21:9246373-9246462 - 50 9.21e-16 GACAGGAT CTCATTCTGTCACACAGTCTGGAGTGCAGTGG GAGTATCTCA chr9:135936085-135936203 - 45 1.46e-15 GAAATAGGCT CTTTCTCTGTCACCCAGGCTAGAGTGCAGTGA TGGCGCCACT chr17:81975759-81975893 + 16 2.05e-15 gagacagagt cttgctccgtctcccaggctggagtacagtgg cgtgatctca chrY:22244247-22244370 - 62 2.05e-15 AGACAGT CTCGCTCTGTCGCCCAGACTGGAGGGCATTGG CATGATTTCA chrY:10852146-10852206 + 13 3.22e-15 ttgagaggat ctcactctgtcttccagactggattgcagtgg ctaaatctta chrY:11005578-11005647 + 22 3.74e-15 tccacaggat ctcactctgtcacaaatactggagtgcagtgg cagaatctca chrY:10994004-10994072 + 21 4.07e-15 tcgagagtat ctcactctgtcacccagtctggagcacaatgg cagaaactta chrY:10992883-10992951 + 21 4.07e-15 tcaagagtat ctcactctgtcacccatactggagcacagtgg cagaatctca chr20:28889642-28889706 + 17 5.82e-15 tcgacaggat ctcactgtgtcacccaggctggagtgcagcag cagtatctca chr5:11493047-11493113 - 21 6.77e-15 GAGACAGAGT CTCACTCCGTCATCCAGGCTGGAGTGTAATGG CAGGATCTGG chr8:38120425-38120494 + 18 8.64e-15 gagatggagt tttgctctatcacccaggctggagtgcagtga tggaatctcg chr11:98293904-98294030 + 19 1.28e-14 gagacaggat cttgctctgtcacccaagccggagtgcaatgg tgggatctga chr11:41866190-41866320 + 20 1.50e-14 gagacggagt ctcgctccgtctcccaggctggtttgcagtgg cgagctcttg chr16:34071216-34071277 - 15 2.23e-14 TCGAGAGTAT CTCAGTCTGTCACCCAGACTGCAGCGCAGTGG CAGAATCTCA chrY:11004663-11004730 + 21 2.23e-14 tcaaagggat atcacggtgtcacccagactggagtgcagtgg cagaatctca chr16:34062725-34062789 - 17 4.09e-14 TCGACAGGAT CTCCCTCTGTCACACAGGCTATAGCGCAGTGG CAGAATCTCA chrY:10900026-10900090 + 17 6.87e-14 taaacaggat ctctctctgtcacaaaggcaagagtgcagtgg cagattctca chrY:10899770-10899837 + 21 1.22e-13 tcaacaggat gtcactgtgttacccaggctggagtgcagtta cagtatctca chr16:6942222-6942291 - 16 1.30e-13 GAGATGGAGT CTCACTCGGTCAGTCAGGCTGAAGTGCAGTGG TGGGATCCTG chrY:10969544-10969612 + 21 7.01e-13 ttgacaggat ttcactgtgtcacccaggctggagagcacagg cagaatgtca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrY:11294512-11294580 1.6e-19 20_[+9]_16 chr1:211811793-211811867 1.6e-19 20_[-9]_22 chr14:49491734-49491876 3.4e-19 8_[+9]_60 chr13:66609946-66610081 3.4e-19 22_[+9]_46 chrX:153022090-153022227 3.4e-19 47_[-9]_21 chr8:4241697-4241840 3.4e-19 13_[+9]_55 chr6:88152107-88152240 3.4e-19 49_[-9]_19 chr2:137581646-137581785 3.4e-19 52_[-9]_16 chr17:7493921-7493984 4.9e-19 14_[-9]_17 chr14:32081424-32081571 9.4e-19 59_[-9]_9 chr12:116051249-11605130 1.8e-18 11_[-9]_15 chr8:40903481-40903538 6e-18 13_[-9]_12 chrY:11032208-11032271 6.7e-18 15_[+9]_16 chr12:78256316-78256447 8.7e-18 17_[+9]_51 chr16_KI270728v1_random: 1e-17 47_[-9]_12 chrY:10979699-10979767 1e-17 20_[+9]_16 chr2:220822890-220823010 1.4e-17 50_[-9]_18 chr7:56981467-56981591 1.6e-17 55_[-9]_13 chr7:40248578-40248640 2.1e-17 17_[+9]_13 chr15:33249309-33249446 3.5e-17 22_[+9]_46 chr7:107797740-107797807 4.8e-17 20_[+9]_15 chr9:41801900-41802022 5.8e-17 54_[-9]_14 chr13:95346471-95346578 6.7e-17 21_[+9]_47 chr4_GL000008v2_random:2 8.3e-17 16_[-9]_8 chr20:26078445-26078511 1.1e-16 20_[-9]_14 chr20:25777376-25777441 1.1e-16 14_[+9]_19 chr19:45802816-45802934 1.2e-16 21_[+9]_47 chr7:66553240-66553303 2.1e-16 12_[-9]_19 chrY:10649762-10649826 2.5e-16 16_[+9]_16 chrY:10631330-10631394 2.5e-16 16_[+9]_16 chr21:9246373-9246462 9.2e-16 49_[-9]_8 chr9:135936085-135936203 1.5e-15 44_[-9]_24 chr17:81975759-81975893 2.1e-15 15_[+9]_53 chrY:22244247-22244370 2.1e-15 61_[-9]_7 chrY:10852146-10852206 3.2e-15 12_[+9]_16 chrY:11005578-11005647 3.7e-15 21_[+9]_16 chrY:10994004-10994072 4.1e-15 20_[+9]_16 chrY:10992883-10992951 4.1e-15 20_[+9]_16 chr20:28889642-28889706 5.8e-15 16_[+9]_16 chr5:11493047-11493113 6.8e-15 20_[-9]_14 chr8:38120425-38120494 8.6e-15 17_[+9]_20 chr11:98293904-98294030 1.3e-14 18_[+9]_50 chr11:41866190-41866320 1.5e-14 19_[+9]_49 chr16:34071216-34071277 2.2e-14 14_[-9]_15 chrY:11004663-11004730 2.2e-14 20_[+9]_15 chr16:34062725-34062789 4.1e-14 16_[-9]_16 chrY:10900026-10900090 6.9e-14 16_[+9]_16 chrY:10899770-10899837 1.2e-13 20_[+9]_15 chr16:6942222-6942291 1.3e-13 15_[-9]_22 chrY:10969544-10969612 7e-13 20_[+9]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG width=32 seqs=50 chrY:11294512-11294580 ( 21) CTCACTCTGTCACCCAGGCTGGAGTGCAGTGG 1 chr1:211811793-211811867 ( 21) CTCACTCTGTCACCCAGGCTGGAGTGCAGTGG 1 chr14:49491734-49491876 ( 9) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr13:66609946-66610081 ( 23) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chrX:153022090-153022227 ( 48) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr8:4241697-4241840 ( 14) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr6:88152107-88152240 ( 50) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr2:137581646-137581785 ( 53) CTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr17:7493921-7493984 ( 15) CTTGCTCTGTCACCCAGGCTGGAGTGCAGTGG 1 chr14:32081424-32081571 ( 60) CTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr12:116051249-11605130 ( 12) CTCGCTCTGTCATCCAGGCTGGAGTGCAGTGG 1 chr8:40903481-40903538 ( 14) CTCACTCTGTTGCCCAGGCTGGAGTGCAGTGG 1 chrY:11032208-11032271 ( 16) CTCACTCTGTCACCCAGGCTGGTGTGCAGTGG 1 chr12:78256316-78256447 ( 18) CTTGCTCTGTCACCCAGGCTAGAGTGCAGTGG 1 chr16_KI270728v1_random: ( 48) CTCGCTCTGTCACCCAGGCTTGAGTGCAGTGG 1 chrY:10979699-10979767 ( 21) CTCGCTCTGTCACCCAGCCTGGAGTGCAGTGG 1 chr2:220822890-220823010 ( 51) CTCGCTCTGTCACCCAGGCGGGAGTGCAGTGG 1 chr7:56981467-56981591 ( 56) CTCACTCTGTCACCCAGGCTGGAGTGCGGTGG 1 chr7:40248578-40248640 ( 18) CTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGG 1 chr15:33249309-33249446 ( 23) CGCGCTCTGTCGCCCAGGCTGGAGTGCAGTGG 1 chr7:107797740-107797807 ( 21) CTTGCTCTGTCGCCCAGGCTGGAGTGTAGTGG 1 chr9:41801900-41802022 ( 55) CTGGCTCTGTCGTCCAGGCTGGAGTGCAGTGG 1 chr13:95346471-95346578 ( 22) CTCGCTCTGTTGCCCAGGCTGGAGTGCAATGG 1 chr4_GL000008v2_random:2 ( 17) GTCACTCTGTCACCCAGTCTGGAGTGCAGTGG 1 chr20:26078445-26078511 ( 21) CTCACTCTGTCCCCCAGGCTGGAGTGGAGTGG 1 chr20:25777376-25777441 ( 15) CTCACTCTGTCCCCCAGGCTGGAGTGGAGTGG 1 chr19:45802816-45802934 ( 22) CTGGCTCTGTCGCCCAGGCTGAAGTGCAGTGG 1 chr7:66553240-66553303 ( 13) CTAGCTCTGTCACCCAGGCTGTAGTGCAGTGG 1 chrY:10649762-10649826 ( 17) CTGACTCTGTCACACAGGCTGGAGGGCAGTGG 1 chrY:10631330-10631394 ( 17) CTGACTCTGTCACACAGGCTGGAGGGCAGTGG 1 chr21:9246373-9246462 ( 50) CTCATTCTGTCACACAGTCTGGAGTGCAGTGG 1 chr9:135936085-135936203 ( 45) CTTTCTCTGTCACCCAGGCTAGAGTGCAGTGA 1 chr17:81975759-81975893 ( 16) CTTGCTCCGTCTCCCAGGCTGGAGTACAGTGG 1 chrY:22244247-22244370 ( 62) CTCGCTCTGTCGCCCAGACTGGAGGGCATTGG 1 chrY:10852146-10852206 ( 13) CTCACTCTGTCTTCCAGACTGGATTGCAGTGG 1 chrY:11005578-11005647 ( 22) CTCACTCTGTCACAAATACTGGAGTGCAGTGG 1 chrY:10994004-10994072 ( 21) CTCACTCTGTCACCCAGTCTGGAGCACAATGG 1 chrY:10992883-10992951 ( 21) CTCACTCTGTCACCCATACTGGAGCACAGTGG 1 chr20:28889642-28889706 ( 17) CTCACTGTGTCACCCAGGCTGGAGTGCAGCAG 1 chr5:11493047-11493113 ( 21) CTCACTCCGTCATCCAGGCTGGAGTGTAATGG 1 chr8:38120425-38120494 ( 18) TTTGCTCTATCACCCAGGCTGGAGTGCAGTGA 1 chr11:98293904-98294030 ( 19) CTTGCTCTGTCACCCAAGCCGGAGTGCAATGG 1 chr11:41866190-41866320 ( 20) CTCGCTCCGTCTCCCAGGCTGGTTTGCAGTGG 1 chr16:34071216-34071277 ( 15) CTCAGTCTGTCACCCAGACTGCAGCGCAGTGG 1 chrY:11004663-11004730 ( 21) ATCACGGTGTCACCCAGACTGGAGTGCAGTGG 1 chr16:34062725-34062789 ( 17) CTCCCTCTGTCACACAGGCTATAGCGCAGTGG 1 chrY:10900026-10900090 ( 17) CTCTCTCTGTCACAAAGGCAAGAGTGCAGTGG 1 chrY:10899770-10899837 ( 21) GTCACTGTGTTACCCAGGCTGGAGTGCAGTTA 1 chr16:6942222-6942291 ( 16) CTCACTCGGTCAGTCAGGCTGAAGTGCAGTGG 1 chrY:10969544-10969612 ( 21) TTCACTGTGTCACCCAGGCTGGAGAGCACAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 32 n= 19904 bayes= 8.63329 E= 1.2e-484 -357 178 -271 -257 -1229 -1229 -371 204 -357 146 -171 -40 89 -371 93 -257 -1229 187 -371 -357 -1229 -1229 -371 204 -1229 181 -171 -1229 -1229 -213 -371 195 -357 -1229 190 -1229 -1229 -1229 -1229 207 -1229 181 -1229 -157 134 -271 19 -198 -1229 178 -371 -157 -99 171 -1229 -357 -257 187 -1229 -1229 207 -1229 -1229 -1229 -357 -1229 184 -257 -99 -371 161 -198 -1229 193 -1229 -1229 -357 -371 -371 198 -157 -1229 178 -357 -257 -371 178 -257 201 -1229 -1229 -257 -1229 -1229 187 -257 -357 -171 -213 182 -198 -1229 184 -1229 -1229 181 -271 -257 204 -1229 -371 -1229 -157 -371 175 -357 -357 -371 -1229 201 -357 -1229 187 -357 -198 -1229 184 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 32 nsites= 50 E= 1.2e-484 0.020000 0.900000 0.040000 0.040000 0.000000 0.000000 0.020000 0.980000 0.020000 0.720000 0.080000 0.180000 0.440000 0.020000 0.500000 0.040000 0.000000 0.960000 0.020000 0.020000 0.000000 0.000000 0.020000 0.980000 0.000000 0.920000 0.080000 0.000000 0.000000 0.060000 0.020000 0.920000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.920000 0.000000 0.080000 0.600000 0.040000 0.300000 0.060000 0.000000 0.900000 0.020000 0.080000 0.120000 0.860000 0.000000 0.020000 0.040000 0.960000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.940000 0.040000 0.120000 0.020000 0.800000 0.060000 0.000000 1.000000 0.000000 0.000000 0.020000 0.020000 0.020000 0.940000 0.080000 0.000000 0.900000 0.020000 0.040000 0.020000 0.900000 0.040000 0.960000 0.000000 0.000000 0.040000 0.000000 0.000000 0.960000 0.040000 0.020000 0.080000 0.060000 0.840000 0.060000 0.000000 0.940000 0.000000 0.000000 0.920000 0.040000 0.040000 0.980000 0.000000 0.020000 0.000000 0.080000 0.020000 0.880000 0.020000 0.020000 0.020000 0.000000 0.960000 0.020000 0.000000 0.960000 0.020000 0.060000 0.000000 0.940000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCRCTCTGTCRCCCAGGCTGGAGTGCAGTGG MEME-9 regular expression -------------------------------------------------------------------------------- CTC[GA]CTCTGTC[AG]CCCAGGCTGGAGTGCAGTGG -------------------------------------------------------------------------------- Time 1902.71 secs. ******************************************************************************** ******************************************************************************** MOTIF ATCCYGCCACTGCACTCCAGCC MEME-10 width = 22 sites = 50 llr = 1307 E-value = 8.8e-342 ******************************************************************************** -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 Description -------------------------------------------------------------------------------- Simplified A a::::2::a::::a::::a::: pos.-specific C ::886:aa:a::9:a:99::aa probability G :::::8:::::a::::1::a:: matrix T :a223:::::a:1::a:1:::: bits 2.1 * * * * * * 1.9 ** ** ** *** * ** 1.7 ** ****** ********* 1.5 ** **************** Relative 1.2 **** ***************** Entropy 1.0 **** ***************** (37.7 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel ATCCCGCCACTGCACTCCAGCC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr18_GL383571v1_alt:151 + 31 8.14e-14 gtgagccgag atcccgccactgcactccagcc tgggcgacag chr19:39543119-39543186 + 1 8.14e-14 . atcccgccactgcactccagcc tgggtgacac chr12:127172244-12717231 + 9 8.14e-14 gagccgag atcccgccactgcactccagcc ttggcgacag chr11:78382368-78382460 - 55 8.14e-14 GTGAGCCGAG ATCCCGCCACTGCACTCCAGCC TGGGCGACAG chr11:62122843-62122922 - 54 8.14e-14 CGAG ATCCCGCCACTGCACTCCAGCC TGGGCGACAG chrY:2440520-2440596 - 52 8.14e-14 GAG ATCCCGCCACTGCACTCCAGCC TGGGTGACAG chrX:99826014-99826137 + 37 8.14e-14 gtgagccgag atcccgccactgcactccagcc tgggcgacag chrX:2440520-2440596 - 52 8.14e-14 GAG ATCCCGCCACTGCACTCCAGCC TGGGTGACAG chr7:18938173-18938254 + 10 8.14e-14 tgagccgag atcccgccactgcactccagcc tgggcgacag chr6:105582204-105582285 + 5 8.14e-14 cgag atcccgccactgcactccagcc tgggcaacag chr5:170731817-170731902 + 8 8.14e-14 agctgag atcccgccactgcactccagcc tgggccacag chr2:239933504-239933585 - 57 8.14e-14 GAG ATCCCGCCACTGCACTCCAGCC TGGGTGACAG chr1:173186989-173187072 + 14 8.14e-14 gtgagccaag atcccgccactgcactccagcc tgggtaacag chr1:171854491-171854565 - 44 8.14e-14 TGAGCTGAG ATCCCGCCACTGCACTCCAGCC TGGGCGACAA chr15:57715321-57715416 - 56 1.55e-13 GTGAGCCGAG ATCCTGCCACTGCACTCCAGCC TGGGCGACAG chr11:19449316-19449411 + 33 1.55e-13 gtgagctgag atcctgccactgcactccagcc tgagcgacag chr7:68865517-68865590 + 9 1.55e-13 gagcaggc atcctgccactgcactccagcc tgggtgatac chr2:88567965-88568052 - 46 1.55e-13 GTGAGCCAAG ATCCTGCCACTGCACTCCAGCC TGGGCAACAG chr14:57632709-57632776 - 31 2.29e-13 GTGAGCCAAG ATCCCACCACTGCACTCCAGCC TGGGCATGTC chr6:99570037-99570109 - 45 3.03e-13 GCCGAG ATCTCGCCACTGCACTCCAGCC TGGGCGACAG chr3:46544422-46544490 + 1 3.03e-13 . atctcgccactgcactccagcc tgggtgacag chr2:227768483-227768553 + 10 3.03e-13 tgagccgag atctcgccactgcactccagcc tgggtgacag chr19:35747214-35747303 - 57 4.44e-13 CACTAGGCCG ATCCTACCACTGCACTCCAGCC TGGCTGACAG chr4:83838487-83838560 + 10 5.85e-13 tgagccgag atcccgccactgtactccagcc tgggcagcag chr1:6339739-6339890 - 20 5.85e-13 GTGAGCTGAG ATCTTGCCACTGCACTCCAGCC TGGGTGACAG chr19:30202566-30202642 - 49 6.53e-13 GCTGAG ATTCTGCCACTGCACTCCAGCC TGGGTGACAA chr19:7064951-7065038 + 19 6.53e-13 tgcccatcaa attctgccactgcactccagcc tgggtgacag chr2:232673731-232673816 - 49 6.53e-13 GTGAGCCAAG ATTCTGCCACTGCACTCCAGCC TGGGTGGCAG chr19_GL383574v1_alt:176 + 7 8.68e-13 gcagag atccagccactgcactccagcc tgggcaacag chr19:34154020-34154096 + 7 8.68e-13 gcagag atccagccactgcactccagcc tgggcaacag chr11:74090355-74090397 + 2 8.68e-13 g atcccgccactgcactctagcc tgggcgacaa chr12:34211977-34212058 + 6 1.02e-12 ccgag atctcaccactgcactccagcc tgggcaacag chr8:46441903-46441995 + 24 1.02e-12 gtaagccgag atctcaccactgcactccagcc tgggtgtgag chr1:1498707-1498783 - 40 1.02e-12 AGCCGCCGAG ATCTCACCACTGCACTCCAGCC TGGGCGACGG chr1:1446845-1446921 - 40 1.02e-12 AGCCGCCGAG ATCTCACCACTGCACTCCAGCC TGGGCGACGG chr1:23869167-23869233 + 6 2.11e-12 ccgag ataccgccactgcactccagcc cctgggcgac chr16:52968181-52968260 - 57 2.88e-12 G ATCCCACCACTGCACTCTAGCC TGGGTGACAC chr4:150724765-150724860 + 28 3.09e-12 gtgagttgat atcccaccactgcactgcagcc tgggtgatag chr15:92839132-92839211 - 55 3.84e-12 GAG ATCCTGCCACTGCACTCCAACC TGGGTGACAG chr7:12035087-12035156 + 4 3.84e-12 gag atcctgccactgcactccagtc tgggcaacag chr10:117007497-11700758 + 10 5.16e-12 tgagctgag attctgccactgcactgcagcc tgggtgacag chrY:10779489-10779561 - 41 5.16e-12 GTGAGATGAG ATTCTGCCACTGCACTGCAGCC TGTATGACAG chr4:69752231-69752302 - 49 5.16e-12 G ATTCCACCACTGTACTCCAGCC TGGGCGAAAG chr19_GL383573v1_alt:272 - 38 8.63e-12 . ATCCTGTCACTGTACTCCAGCC TGGGTGACAG chr19:20929104-20929163 - 38 8.63e-12 . ATCCTGTCACTGTACTCCAGCC TGGGTGACAG chr9:6429412-6429480 - 47 9.97e-12 . ATCCCGCCACTATACTCCAGCC TGCATGACAG chrX:119994220-119994305 + 16 1.61e-11 gtgtgtaaag atccggccattgcactccagcc tgggtgacag chr7:50189188-50189286 + 48 1.78e-11 gtgagctgag atttcgccactgcactccagca agactccagc chr5:22954352-22954436 + 9 1.78e-11 agccgaga tttccaccactgcactccagcc tgggggagag chr11:61251690-61251760 + 9 2.27e-10 gagctgag atcctgccattgtactctatcc tgggcgacac -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr18_GL383571v1_alt:151 8.1e-14 30_[+10]_48 chr19:39543119-39543186 8.1e-14 [+10]_45 chr12:127172244-12717231 8.1e-14 8_[+10]_42 chr11:78382368-78382460 8.1e-14 54_[-10]_16 chr11:62122843-62122922 8.1e-14 53_[-10]_4 chrY:2440520-2440596 8.1e-14 51_[-10]_3 chrX:99826014-99826137 8.1e-14 36_[+10]_42 chrX:2440520-2440596 8.1e-14 51_[-10]_3 chr7:18938173-18938254 8.1e-14 9_[+10]_50 chr6:105582204-105582285 8.1e-14 4_[+10]_55 chr5:170731817-170731902 8.1e-14 7_[+10]_56 chr2:239933504-239933585 8.1e-14 56_[-10]_3 chr1:173186989-173187072 8.1e-14 13_[+10]_48 chr1:171854491-171854565 8.1e-14 43_[-10]_9 chr15:57715321-57715416 1.6e-13 55_[-10]_18 chr11:19449316-19449411 1.6e-13 32_[+10]_41 chr7:68865517-68865590 1.6e-13 8_[+10]_43 chr2:88567965-88568052 1.6e-13 45_[-10]_20 chr14:57632709-57632776 2.3e-13 30_[-10]_15 chr6:99570037-99570109 3e-13 44_[-10]_6 chr3:46544422-46544490 3e-13 [+10]_46 chr2:227768483-227768553 3e-13 9_[+10]_39 chr19:35747214-35747303 4.4e-13 56_[-10]_11 chr4:83838487-83838560 5.9e-13 9_[+10]_42 chr1:6339739-6339890 5.9e-13 19_[-10]_59 chr19:30202566-30202642 6.5e-13 48_[-10]_6 chr19:7064951-7065038 6.5e-13 18_[+10]_47 chr2:232673731-232673816 6.5e-13 48_[-10]_15 chr19_GL383574v1_alt:176 8.7e-13 6_[+10]_48 chr19:34154020-34154096 8.7e-13 6_[+10]_48 chr11:74090355-74090397 8.7e-13 1_[+10]_19 chr12:34211977-34212058 1e-12 5_[+10]_54 chr8:46441903-46441995 1e-12 23_[+10]_47 chr1:1498707-1498783 1e-12 39_[-10]_15 chr1:1446845-1446921 1e-12 39_[-10]_15 chr1:23869167-23869233 2.1e-12 5_[+10]_39 chr16:52968181-52968260 2.9e-12 56_[-10]_1 chr4:150724765-150724860 3.1e-12 27_[+10]_46 chr15:92839132-92839211 3.8e-12 54_[-10]_3 chr7:12035087-12035156 3.8e-12 3_[+10]_44 chr10:117007497-11700758 5.2e-12 9_[+10]_52 chrY:10779489-10779561 5.2e-12 40_[-10]_10 chr4:69752231-69752302 5.2e-12 48_[-10]_1 chr19_GL383573v1_alt:272 8.6e-12 37_[-10] chr19:20929104-20929163 8.6e-12 37_[-10] chr9:6429412-6429480 1e-11 46_[-10] chrX:119994220-119994305 1.6e-11 15_[+10]_48 chr7:50189188-50189286 1.8e-11 47_[+10]_29 chr5:22954352-22954436 1.8e-11 8_[+10]_54 chr11:61251690-61251760 2.3e-10 8_[+10]_40 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ATCCYGCCACTGCACTCCAGCC width=22 seqs=50 chr18_GL383571v1_alt:151 ( 31) ATCCCGCCACTGCACTCCAGCC 1 chr19:39543119-39543186 ( 1) ATCCCGCCACTGCACTCCAGCC 1 chr12:127172244-12717231 ( 9) ATCCCGCCACTGCACTCCAGCC 1 chr11:78382368-78382460 ( 55) ATCCCGCCACTGCACTCCAGCC 1 chr11:62122843-62122922 ( 54) ATCCCGCCACTGCACTCCAGCC 1 chrY:2440520-2440596 ( 52) ATCCCGCCACTGCACTCCAGCC 1 chrX:99826014-99826137 ( 37) ATCCCGCCACTGCACTCCAGCC 1 chrX:2440520-2440596 ( 52) ATCCCGCCACTGCACTCCAGCC 1 chr7:18938173-18938254 ( 10) ATCCCGCCACTGCACTCCAGCC 1 chr6:105582204-105582285 ( 5) ATCCCGCCACTGCACTCCAGCC 1 chr5:170731817-170731902 ( 8) ATCCCGCCACTGCACTCCAGCC 1 chr2:239933504-239933585 ( 57) ATCCCGCCACTGCACTCCAGCC 1 chr1:173186989-173187072 ( 14) ATCCCGCCACTGCACTCCAGCC 1 chr1:171854491-171854565 ( 44) ATCCCGCCACTGCACTCCAGCC 1 chr15:57715321-57715416 ( 56) ATCCTGCCACTGCACTCCAGCC 1 chr11:19449316-19449411 ( 33) ATCCTGCCACTGCACTCCAGCC 1 chr7:68865517-68865590 ( 9) ATCCTGCCACTGCACTCCAGCC 1 chr2:88567965-88568052 ( 46) ATCCTGCCACTGCACTCCAGCC 1 chr14:57632709-57632776 ( 31) ATCCCACCACTGCACTCCAGCC 1 chr6:99570037-99570109 ( 45) ATCTCGCCACTGCACTCCAGCC 1 chr3:46544422-46544490 ( 1) ATCTCGCCACTGCACTCCAGCC 1 chr2:227768483-227768553 ( 10) ATCTCGCCACTGCACTCCAGCC 1 chr19:35747214-35747303 ( 57) ATCCTACCACTGCACTCCAGCC 1 chr4:83838487-83838560 ( 10) ATCCCGCCACTGTACTCCAGCC 1 chr1:6339739-6339890 ( 20) ATCTTGCCACTGCACTCCAGCC 1 chr19:30202566-30202642 ( 49) ATTCTGCCACTGCACTCCAGCC 1 chr19:7064951-7065038 ( 19) ATTCTGCCACTGCACTCCAGCC 1 chr2:232673731-232673816 ( 49) ATTCTGCCACTGCACTCCAGCC 1 chr19_GL383574v1_alt:176 ( 7) ATCCAGCCACTGCACTCCAGCC 1 chr19:34154020-34154096 ( 7) ATCCAGCCACTGCACTCCAGCC 1 chr11:74090355-74090397 ( 2) ATCCCGCCACTGCACTCTAGCC 1 chr12:34211977-34212058 ( 6) ATCTCACCACTGCACTCCAGCC 1 chr8:46441903-46441995 ( 24) ATCTCACCACTGCACTCCAGCC 1 chr1:1498707-1498783 ( 40) ATCTCACCACTGCACTCCAGCC 1 chr1:1446845-1446921 ( 40) ATCTCACCACTGCACTCCAGCC 1 chr1:23869167-23869233 ( 6) ATACCGCCACTGCACTCCAGCC 1 chr16:52968181-52968260 ( 57) ATCCCACCACTGCACTCTAGCC 1 chr4:150724765-150724860 ( 28) ATCCCACCACTGCACTGCAGCC 1 chr15:92839132-92839211 ( 55) ATCCTGCCACTGCACTCCAACC 1 chr7:12035087-12035156 ( 4) ATCCTGCCACTGCACTCCAGTC 1 chr10:117007497-11700758 ( 10) ATTCTGCCACTGCACTGCAGCC 1 chrY:10779489-10779561 ( 41) ATTCTGCCACTGCACTGCAGCC 1 chr4:69752231-69752302 ( 49) ATTCCACCACTGTACTCCAGCC 1 chr19_GL383573v1_alt:272 ( 38) ATCCTGTCACTGTACTCCAGCC 1 chr19:20929104-20929163 ( 38) ATCCTGTCACTGTACTCCAGCC 1 chr9:6429412-6429480 ( 47) ATCCCGCCACTATACTCCAGCC 1 chrX:119994220-119994305 ( 16) ATCCGGCCATTGCACTCCAGCC 1 chr7:50189188-50189286 ( 48) ATTTCGCCACTGCACTCCAGCA 1 chr5:22954352-22954436 ( 9) TTTCCACCACTGCACTCCAGCC 1 chr11:61251690-61251760 ( 9) ATCCTGCCATTGTACTCTATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 23584 bayes= 9.36954 E= 8.8e-342 204 -1229 -1229 -357 -1229 -1229 -1229 207 -357 164 -1229 -57 -1229 164 -1229 -40 -257 124 -371 43 -25 -1229 161 -1229 -1229 187 -1229 -257 -1229 193 -1229 -1229 207 -1229 -1229 -1229 -1229 187 -1229 -257 -1229 -1229 -1229 207 -357 -1229 190 -1229 -1229 175 -1229 -99 207 -1229 -1229 -1229 -1229 193 -1229 -1229 -1229 -1229 -1229 207 -1229 184 -213 -1229 -1229 184 -1229 -198 207 -1229 -1229 -1229 -357 -1229 187 -357 -1229 190 -1229 -357 -357 190 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 8.8e-342 0.980000 0.000000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.020000 0.820000 0.000000 0.160000 0.000000 0.820000 0.000000 0.180000 0.040000 0.620000 0.020000 0.320000 0.200000 0.000000 0.800000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.880000 0.000000 0.120000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.940000 0.060000 0.000000 0.000000 0.940000 0.000000 0.060000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 0.000000 0.980000 0.000000 0.020000 0.020000 0.980000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ATCCYGCCACTGCACTCCAGCC MEME-10 regular expression -------------------------------------------------------------------------------- ATCC[CT][GA]CCACTGCACTCCAGCC -------------------------------------------------------------------------------- Time 2043.71 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:1446703-1446719 1.00e+00 16 chr1:1446845-1446921 1.09e-37 23_[+9(8.67e-18)]_21 chr1:1498565-1498581 1.00e+00 16 chr1:1498707-1498783 5.32e-39 23_[+9(8.67e-18)]_21 chr1:6339739-6339890 1.82e-50 3_[+9(1.61e-19)]_31_[-7(5.65e-05)]_\ 3 chr1:9774050-9774114 6.94e-31 34_[-5(2.09e-13)] chr1:23219836-23220146 1.33e-25 1_[+1(2.85e-19)]_18_[-6(9.97e-16)]_\ 25 chr1:23869167-23869233 8.06e-12 5_[+10(2.11e-12)]_39 chr1:33000000-33000040 5.76e-12 [+7(3.55e-19)]_9 chr1:37497256-37497363 3.56e-21 6_[+9(4.95e-12)]_[-7(8.65e-12)]_31 chr1:74391957-74392094 2.40e-53 18_[+9(3.39e-19)]_50 chr1:113842819-113843119 2.59e-27 6_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 20 chr1:145410314-145410612 5.63e-31 19_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 7 chr1:151910435-151910523 1.77e-27 28_[+4(9.95e-10)]_6_[+2(4.79e-08)]_\ 1 chr1:171854491-171854565 3.20e-36 3_[+8(1.39e-12)]_[-4(8.14e-14)]_18 chr1:173186989-173187072 1.14e-78 2_[+5(4.58e-18)]_14_[-3(3.16e-16)]_\ 6 chr1:173599126-173599240 1.73e-51 13_[+9(1.61e-19)]_55 chr1:173986369-173986419 6.72e-17 10_[+9(7.89e-14)]_8 chr1:201771159-201771255 4.38e-93 7_[+7(1.00e-18)]_26_[-3(1.23e-19)]_\ 1 chr1:211811761-211811793 2.53e-16 9_[+4(8.14e-14)]_1 chr1:211811793-211811867 7.83e-35 20_[-9(1.61e-19)]_22 chr1:231968484-231968621 4.79e-59 47_[-9(3.39e-19)]_21 chr1:244914291-244914406 1.94e-110 6_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 2 chr2:13623723-13623774 5.19e-03 22_[-6(1.51e-07)]_4 chr2:15501584-15501684 4.26e-115 3_[-2(9.25e-20)]_30_[-7(3.58e-18)]_\ 5 chr2:19952781-19952913 3.14e-57 19_[+9(3.39e-19)]_49 chr2:28070546-28070678 2.05e-56 15_[+9(1.61e-19)]_53 chr2:31804882-31804928 1.19e-21 15_[+2(4.87e-15)] chr2:40107195-40107304 1.37e-107 21_[+5(1.23e-18)]_18_[+2(9.25e-20)] chr2:40995299-40995401 1.79e-64 14_[+5(3.46e-16)]_11_[-8(1.02e-10)]_\ 14 chr2:59892887-59892992 5.13e-117 5_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 3 chr2:88567965-88568052 1.77e-70 6_[+8(1.91e-16)]_11_[-5(2.46e-17)]_\ 9 chr2:114289902-114290036 2.82e-46 15_[+9(6.70e-18)]_53 chr2:118148563-118148706 3.14e-57 50_[-9(3.39e-19)]_18 chr2:120016659-120016722 2.16e-24 1_[+8(2.87e-11)]_6_[-10(8.15e-10)]_\ 3 chr2:137581646-137581785 3.14e-57 52_[-9(3.39e-19)]_16 chr2:142442290-142442400 2.46e-85 3_[+8(1.49e-17)]_11_[-5(1.23e-18)]_\ 25 chr2:142870245-142870407 1.30e-91 12_[+7(3.55e-19)]_23_[-8(2.59e-19)]_\ 3 chr2:186537559-186537693 2.68e-37 51_[-7(3.71e-16)]_18 chr2:188165950-188166023 1.35e-51 1_[+8(6.18e-17)]_11_[-5(1.28e-15)] chr2:195546375-195546451 1.33e-28 1_[+8(2.76e-13)]_11_[-5(8.91e-10)]_\ 3 chr2:212562033-212562151 1.94e-110 7_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 1 chr2:220822890-220823010 7.86e-29 19_[+7(3.50e-09)]_[-9(1.42e-17)]_18 chr2:227768483-227768553 8.09e-38 15_[-9(1.61e-19)]_23 chr2:232673731-232673816 3.44e-64 6_[+3(1.71e-15)]_14_[-5(3.46e-16)]_\ 4 chr2:239933504-239933585 8.54e-54 14_[+3(1.95e-09)]_11_\ [-10(8.14e-14)]_3 chr3:12274439-12274554 2.03e-46 22_[+9(1.61e-19)]_46 chr3:12527443-12527548 5.00e-113 13_[+8(1.36e-19)]_23_[-7(3.55e-19)]_\ 2 chr3:34913100-34913400 2.59e-27 6_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 20 chr3:41107409-41107558 2.42e-50 52_[-7(3.55e-19)]_17 chr3:46531151-46531238 2.54e-55 1_[+3(5.57e-15)]_2_[-4(7.31e-11)]_\ 31 chr3:46544422-46544490 1.45e-48 [+10(3.03e-13)]_15_[+2(3.30e-09)] chr3:53841451-53841505 2.07e-19 15_[-5(5.56e-14)]_9 chr3:56132525-56132645 2.17e-52 59_[-9(3.39e-19)]_9 chr3:57444269-57444338 6.49e-48 2_[-2(2.11e-16)]_6_[-4(7.31e-11)]_8 chr3:65955223-65955346 4.38e-05 11_[-6(4.22e-10)]_30_[+4(9.30e-05)]_\ 12 chr3:74999893-75000000 4.26e-106 5_[+3(1.23e-19)]_26_[-7(3.55e-19)]_\ 7 chr3:75065216-75065561 2.07e-10 43_[+6(9.97e-16)]_32 chr3:85175919-85176050 7.45e-60 22_[+9(3.39e-19)]_46 chr3:88050346-88050652 1.15e-28 23_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 3 chr3:110741298-110741582 1.49e-10 30_[+6(9.97e-16)]_45 chr3:115305404-115305716 1.10e-15 [+1(1.99e-09)]_20_[-6(9.90e-15)]_24 chr3:120403854-120403950 1.73e-101 7_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 10 chr3:123580103-123580196 7.18e-58 4_[+5(1.08e-14)]_11_[-8(1.39e-12)]_\ 17 chr3:126833773-126834081 6.29e-25 2_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 24 chr3:141782690-141782828 2.52e-40 23_[+7(3.46e-17)]_46 chr3:159201627-159201752 6.62e-75 [+8(1.36e-19)]_23_[-7(3.55e-19)]_15 chr3:176034243-176034325 1.48e-35 5_[+8(1.05e-15)]_12_[-5(1.48e-09)]_\ 4 chr3:188527749-188527877 8.95e-52 32_[-5(2.35e-18)]_38 chr3:191232534-191232601 1.17e-39 2_[+3(9.43e-16)]_2_[-4(2.89e-08)]_\ 10 chr3:198068107-198068206 1.90e-105 2_[-2(9.25e-20)]_30_[-7(3.58e-18)]_\ 5 chr4:6845352-6845493 3.47e-04 17_[+9(4.84e-07)]_51 chr4:33943216-33943310 2.41e-92 6_[+7(3.55e-19)]_26_[-3(1.23e-19)] chr4:34266624-34266715 4.74e-102 8_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 4 chr4:40528794-40528949 5.98e-33 49_[+7(3.55e-19)]_20 chr4:42619049-42619159 3.25e-48 [+8(3.23e-16)]_23_[-7(3.61e-15)]_15 chr4:54616269-54616579 1.33e-24 1_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 25 chr4:69752231-69752302 1.03e-42 2_[-2(2.71e-11)]_15_[-10(5.16e-12)]_\ 1 chr4:83838487-83838560 2.87e-42 9_[+10(5.85e-13)]_11_[-3(1.71e-15)] chr4:105448936-105449263 2.07e-10 42_[-6(9.97e-16)]_33 chr4:109418181-109418318 2.92e-57 19_[+9(3.39e-19)]_49 chr4:125553522-125553826 7.54e-29 4_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 22 chr4:125857533-125857630 1.38e-56 6_[+3(4.79e-17)]_18_[-5(5.09e-16)]_\ 12 chr4:147922407-147922708 2.59e-27 6_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 20 chr4:150724765-150724860 1.75e-63 27_[+10(3.09e-12)]_11_\ [-3(1.11e-14)]_4 chr4:154968184-154968488 5.49e-29 22_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 4 chr4:156891185-156891309 1.81e-97 10_[+7(3.55e-19)]_26_[-3(1.23e-19)]_\ 2 chr4:166490888-166490987 1.70e-110 2_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 5 chr4:170659942-170660000 5.16e-04 2_[+3(1.97e-06)]_25 chr4:177492573-177492676 8.61e-59 2_[+8(1.93e-15)]_23_[-7(8.42e-18)]_\ 13 chr4:180997022-180997338 6.33e-23 [+1(2.03e-16)]_22_[-6(1.09e-14)]_22 chr5:10005167-10005466 2.59e-27 6_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 20 chr5:11493047-11493113 1.18e-25 20_[-9(6.77e-15)]_14 chr5:22954352-22954436 4.34e-48 8_[+10(1.78e-11)]_11_[-3(1.25e-11)]_\ 12 chr5:26600616-26600726 1.94e-110 2_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 6 chr5:27225859-27225999 3.36e-43 20_[+9(5.99e-18)]_48 chr5:50573252-50573555 2.59e-27 5_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 21 chr5:50877480-50877785 1.15e-28 23_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 3 chr5:72620731-72621025 4.89e-24 26_[+6(9.97e-16)]_18_[-1(1.49e-19)] chr5:79717884-79718186 1.06e-27 21_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 5 chr5:129042999-129043299 1.64e-25 20_[+6(9.97e-16)]_18_[-1(1.57e-17)]_\ 6 chr5:136913412-136913719 1.87e-25 24_[+6(9.97e-16)]_18_[-1(2.85e-19)]_\ 2 chr5:142201948-142202174 2.86e-15 31_[+3(8.53e-08)]_2_[-4(9.72e-06)]_\ 14 chr5:149021884-149022031 4.64e-117 4_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 4 chr5:150583044-150583143 3.42e-05 52_[+6(1.62e-11)]_22 chr5:150933093-150933198 4.77e-108 7_[+7(2.29e-18)]_30_[+2(9.25e-20)]_\ 1 chr5:167426326-167426384 2.08e-04 32_[-6(9.11e-10)]_1 chr5:170731817-170731902 5.96e-81 7_[+10(8.14e-14)]_15_[+2(9.25e-20)]_\ 10 chr5:174998771-174998907 6.42e-36 34_[-7(6.32e-16)]_35 chr5:179549585-179549868 7.27e-08 19_[+6(8.59e-11)]_23_[-1(1.53e-05)]_\ 2 chr6:151650294-151650432 3.14e-57 18_[+9(3.39e-19)]_50 chr6:7266622-7266700 1.01e-54 5_[+3(6.73e-19)]_13_[-10(5.68e-10)]_\ 7 chr6:9014599-9014695 1.73e-101 7_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 10 chr6:12099183-12099465 1.53e-34 11_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 15 chr6:29396131-29396263 3.14e-57 19_[+9(3.39e-19)]_49 chr6:33371999-33372058 6.73e-42 [+3(6.39e-16)]_2_[-4(3.52e-12)]_4 chr6:43592878-43593019 6.52e-06 19_[-4(1.90e-05)]_33_[+6(4.67e-09)]_\ 1 chr6:76544585-76544717 5.87e-41 17_[+9(3.02e-18)]_51 chr6:88152107-88152240 3.14e-57 49_[-9(3.39e-19)]_19 chr6:97748554-97748663 1.23e-90 8_[+7(1.97e-14)]_23_[-8(9.65e-19)]_\ 7 chr6:99570037-99570109 4.65e-68 2_[+3(1.23e-19)]_2_[-4(8.14e-14)]_\ 15 chr6:105582204-105582285 5.84e-79 4_[+10(8.14e-14)]_15_[+2(3.44e-19)]_\ 9 chr6:110424433-110424570 1.64e-56 17_[+7(3.55e-19)]_52 chr6:151779814-151779917 3.06e-83 12_[+7(3.55e-19)]_26_[-3(1.23e-19)] chr6:151780369-151780382 1.00e+00 13 chr6:159844267-159844333 7.17e-49 11_[+4(7.31e-11)]_2_[-3(1.46e-15)] chr7:3295314-3295394 2.28e-87 11_[+4(8.14e-14)]_6_[+2(9.25e-20)]_\ 10 chr7:6325356-6325456 2.22e-05 23_[-6(1.62e-11)]_52 chr7:12035087-12035156 6.54e-44 3_[+10(3.84e-12)]_13_[+2(8.03e-09)] chr7:18938173-18938254 2.67e-87 18_[+4(8.14e-14)]_6_[+2(9.25e-20)]_\ 4 chr7:40248578-40248640 1.10e-25 17_[+9(2.10e-17)]_13 chr7:50189188-50189286 3.54e-29 36_[+5(3.16e-16)]_32 chr7:50189312-50189323 1.00e+00 11 chr7:56981467-56981591 4.78e-46 25_[+7(9.01e-18)]_44 chr7:57632341-57632401 4.05e-06 14_[+9(7.30e-08)]_14 chr7:57833137-57833197 4.05e-06 14_[-9(7.30e-08)]_14 chr7:63595365-63595488 4.78e-46 44_[-7(9.01e-18)]_25 chr7:65847313-65847623 1.33e-24 25_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 1 chr7:66553240-66553303 3.90e-21 12_[-9(2.09e-16)]_19 chr7:68865517-68865590 2.69e-52 8_[+10(1.55e-13)]_11_[-3(2.47e-17)]_\ 1 chr7:88736500-88736641 8.30e-57 49_[-9(3.39e-19)]_19 chr7:95183872-95183940 1.82e-30 31_[-4(3.52e-12)]_15 chr7:99059117-99059397 1.53e-34 16_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 10 chr7:101302231-101302325 1.05e-62 23_[+4(3.52e-12)]_6_[+2(2.80e-14)]_\ 12 chr7:103078654-103078732 9.73e-66 10_[-2(2.26e-17)]_6_[-4(3.52e-12)]_\ 9 chr7:107797740-107797807 3.09e-25 20_[+9(4.76e-17)]_15 chr7:113538585-113538894 6.29e-25 2_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 24 chr7:123113980-123114107 2.75e-58 48_[-9(3.39e-19)]_20 chr7:151478937-151478997 1.00e-23 20_[+9(5.23e-16)]_8 chr8:4164746-4164891 7.78e-17 7_[-10(7.22e-05)]_6_[+7(3.08e-12)]_\ 34 chr8:4241697-4241840 7.71e-39 13_[+9(3.39e-19)]_6_[-7(1.25e-09)]_\ 18 chr8:12911843-12911955 2.24e-76 1_[+8(1.36e-19)]_23_[-7(3.55e-19)]_\ 14 chr8:33482680-33482777 1.17e-70 8_[+3(1.66e-13)]_26_[-7(1.27e-17)]_\ 1 chr8:38120425-38120494 7.63e-33 36_[-5(1.38e-15)]_3 chr8:40903481-40903538 6.62e-23 13_[-9(5.99e-18)]_12 chr8:46441903-46441995 6.46e-63 12_[+5(2.95e-16)]_16_[-3(1.57e-15)]_\ 3 chr8:77725276-77725367 5.33e-48 4_[+5(6.18e-14)]_19_[-8(2.00e-12)]_\ 7 chr8:91388271-91388374 9.42e-55 33_[-7(3.55e-19)]_36 chr8:125333505-125333812 6.29e-25 24_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 2 chr8:144607186-144607259 3.82e-67 10_[+4(5.34e-12)]_6_[+2(2.65e-17)]_\ 4 chr9:5118095-5118175 3.39e-46 23_[-9(3.39e-19)]_25 chr9:6429412-6429480 2.55e-36 [-2(4.17e-10)]_15_[-10(9.97e-12)] chr9:14225342-14225486 3.14e-57 50_[-9(3.39e-19)]_18 chr9:38095864-38096172 6.29e-25 2_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 24 chr9:38978856-38978977 5.79e-51 55_[-9(4.47e-18)]_13 chr9:41801900-41802022 4.22e-52 37_[+5(4.58e-18)]_33 chr9:42452954-42453256 2.59e-27 5_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 21 chr9:67384950-67385071 1.68e-54 14_[+9(4.47e-18)]_54 chr9:78256524-78256664 1.38e-47 47_[-7(3.55e-19)]_22 chr9:86928049-86928140 4.59e-88 2_[+5(5.85e-15)]_14_[-3(5.51e-18)]_\ 14 chr9:87132418-87132725 1.15e-28 3_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 23 chr9:94201876-94201945 1.10e-42 13_[+4(1.03e-08)]_2_[-3(6.50e-15)]_\ 1 chr9:118819636-118819726 6.66e-101 3_[+5(7.94e-18)]_18_[+2(9.25e-20)]_\ 8 chr9:135936085-135936203 3.79e-20 44_[-9(1.46e-15)]_24 chr9:137992728-137992814 7.48e-80 9_[+5(3.80e-17)]_14_[-3(1.23e-19)]_\ 2 chrX:2440520-2440596 6.07e-68 9_[+3(6.89e-16)]_11_[-10(8.14e-14)]_\ 3 chrX:7246262-7246318 2.19e-39 1_[+3(3.47e-19)]_2_[-4(3.52e-12)] chrX:7246605-7246641 5.26e-01 36 chrX:21092030-21092108 3.11e-84 9_[+4(8.14e-14)]_2_[-3(2.40e-18)]_\ 14 chrX:48381540-48381639 2.35e-45 39_[-5(1.26e-16)]_30 chrX:48413786-48413885 2.35e-45 30_[+5(1.26e-16)]_39 chrX:71014195-71014224 1.25e-01 29 chrX:99826014-99826137 5.45e-92 12_[+7(3.55e-19)]_26_[-3(1.23e-19)] chrX:105542663-105542675 1.00e+00 12 chrX:105542742-105542839 2.40e-57 19_[+9(3.39e-19)]_46 chrX:119994220-119994305 3.70e-59 15_[+10(1.61e-11)]_11_\ [-3(6.02e-14)]_6 chrX:129976048-129976195 6.99e-07 1_[-6(3.55e-09)]_30_[+4(1.69e-06)]_\ 22 chrX:153022090-153022227 4.79e-59 47_[-9(3.39e-19)]_21 chrY:2440520-2440596 6.07e-68 9_[+3(6.89e-16)]_11_[-10(8.14e-14)]_\ 3 chrY:3936640-3936720 1.44e-81 12_[+4(8.14e-14)]_6_[+2(7.90e-19)]_\ 9 chrY:7017211-7017275 2.79e-11 4_[+4(4.92e-05)]_2_[-3(3.45e-08)]_5 chrY:8798682-8798778 1.73e-101 5_[-2(9.25e-20)]_18_[-5(1.23e-18)]_\ 12 chrY:10631330-10631394 3.26e-19 16_[+9(2.47e-16)]_16 chrY:10649762-10649826 3.26e-19 16_[+9(2.47e-16)]_16 chrY:10652496-10652545 1.64e-17 17_[-10(1.09e-11)]_10 chrY:10668806-10668855 3.15e-14 1_[+9(4.35e-09)]_16 chrY:10669594-10669643 2.82e-15 17_[-10(1.32e-09)]_10 chrY:10677042-10677111 3.24e-05 37_[-10(7.55e-07)]_10 chrY:10779489-10779561 1.02e-27 24_[+9(7.84e-16)]_16 chrY:10852146-10852206 4.22e-17 12_[+9(3.22e-15)]_16 chrY:10879951-10880000 9.94e-20 1_[+9(7.84e-16)]_16 chrY:10899770-10899837 4.69e-18 20_[+9(1.22e-13)]_15 chrY:10900026-10900090 4.52e-17 16_[+9(6.87e-14)]_16 chrY:10969544-10969612 1.64e-13 20_[+9(7.01e-13)]_16 chrY:10972474-10972528 6.08e-15 6_[+9(7.83e-12)]_16 chrY:10979699-10979767 4.97e-22 20_[+9(9.96e-18)]_16 chrY:10992883-10992951 1.32e-15 20_[+9(4.07e-15)]_16 chrY:10994004-10994072 4.79e-15 20_[+9(4.07e-15)]_16 chrY:11004663-11004730 3.05e-20 20_[+9(2.23e-14)]_15 chrY:11005578-11005647 1.06e-20 21_[+9(3.74e-15)]_16 chrY:11032208-11032271 1.44e-22 15_[+9(6.70e-18)]_16 chrY:11294512-11294580 2.23e-26 20_[+9(1.61e-19)]_16 chrY:15091441-15091750 1.33e-24 25_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 1 chrY:16847094-16847361 5.98e-10 32_[-6(3.00e-15)]_43 chrY:22244247-22244370 3.33e-29 61_[-9(2.05e-15)]_7 chr10:7499879-7500000 1.32e-73 [+8(2.59e-19)]_11_[-5(1.23e-18)]_28 chr10:18112616-18112671 1.45e-02 55 chr10:29407123-29407216 2.98e-64 20_[+5(4.58e-18)]_11_[-8(1.36e-19)]_\ 1 chr10:58719507-58719633 3.46e-57 14_[+9(3.39e-19)]_54 chr10:68874582-68874685 1.15e-114 5_[+7(2.29e-18)]_30_[+2(9.25e-20)]_\ 3 chr10:72143375-72143497 5.05e-09 17_[-4(4.92e-05)]_30_[+6(5.52e-14)]_\ 6 chr10:74430997-74431091 1.33e-101 10_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 5 chr10:80314191-80314300 3.53e-06 58_[+6(1.72e-13)]_17 chr10:95679583-95679889 1.15e-28 23_[+6(9.97e-16)]_18_[-1(1.49e-19)]_\ 3 chr10:96731316-96731453 7.32e-51 25_[+7(5.79e-18)]_44 chr10:102664769-10266485 1.11e-65 6_[+3(1.31e-17)]_2_[-4(7.31e-11)]_\ 27 chr10:102753184-10275323 4.35e-10 14_[+6(8.81e-15)]_11 chr10:117007497-11700758 7.98e-77 9_[+10(5.16e-12)]_15_[+2(3.44e-19)]_\ 6 chr11:19449316-19449411 1.83e-69 21_[+5(2.46e-17)]_11_[-8(9.65e-19)]_\ 2 chr11:20407758-20407788 9.82e-01 30 chr11:38237205-38237328 1.25e-51 40_[-7(3.55e-19)]_29 chr11:41866190-41866320 1.92e-25 19_[+9(1.50e-14)]_49 chr11:61159648-61159738 2.72e-90 6_[+5(1.23e-18)]_11_[-8(1.49e-17)]_\ 12 chr11:61251690-61251760 1.23e-25 8_[+10(2.27e-10)]_8_[-8(4.93e-13)]_\ 1 chr11:62122843-62122922 1.93e-87 7_[-2(9.25e-20)]_6_[-4(8.14e-14)]_\ 13 chr11:71951452-71951485 4.17e-10 [-6(9.97e-16)]_8 chr11:74090355-74090397 5.34e-22 7_[-9(5.42e-13)]_3 chr11:78382368-78382460 2.36e-92 15_[+8(2.59e-19)]_11_[-5(1.23e-18)]_\ 5 chr11:82308029-82308334 2.80e-28 4_[+1(1.49e-19)]_18_[-6(8.81e-15)]_\ 22 chr11:94503762-94503849 4.98e-102 5_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 3 chr11:98293904-98294030 5.69e-26 18_[+9(1.28e-14)]_50 chr11:107369919-10736997 5.22e-19 24_[-4(3.52e-12)]_9 chr11:111842949-11184308 1.44e-03 19_[-4(4.92e-05)]_30_[+6(9.13e-07)]_\ 4 chr11:112726134-11272623 2.41e-115 8_[-2(9.25e-20)]_18_[-5(2.35e-18)]_\ 13 chr11:113239499-11323961 9.09e-77 2_[+8(1.36e-19)]_23_[-7(3.55e-19)]_\ 13 chr11:127933915-12793406 6.92e-48 24_[+7(3.46e-17)]_45 chr11:133433157-13343327 7.45e-60 46_[-9(3.39e-19)]_22 chr12:5701091-5701170 2.59e-43 [-2(3.44e-19)]_48 chr12:12219067-12219133 2.93e-28 11_[-9(2.79e-14)]_23 chr12:12864714-12865016 2.59e-27 5_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 21 chr12:26909472-26909564 6.98e-65 2_[-2(8.14e-18)]_27_[-7(1.40e-12)]_\ 1 chr12:34211977-34212058 2.18e-58 5_[+10(1.02e-12)]_13_[+2(4.65e-15)]_\ 10 chr12:55720833-55720908 1.05e-72 11_[+4(8.14e-14)]_6_[+2(3.44e-19)]_\ 5 chr12:56145973-56146091 1.94e-110 7_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 1 chr12:74005132-74005200 4.40e-56 11_[+4(9.95e-10)]_4_[+2(7.90e-19)] chr12:78256316-78256447 4.63e-44 17_[+9(8.67e-18)]_51 chr12:79496876-79496966 3.96e-72 1_[+5(5.15e-15)]_14_[-3(1.73e-17)]_\ 14 chr12:80818146-80818251 1.24e-83 15_[+8(3.48e-15)]_11_[-5(1.37e-16)]_\ 13 chr12:108075432-10807549 7.47e-36 2_[+8(9.65e-19)]_29 chr12:116051249-11605130 2.36e-26 11_[-9(1.85e-18)]_15 chr12:127172244-12717231 3.64e-58 8_[+10(8.14e-14)]_11_[-3(2.35e-19)] chr13:20734568-20734723 1.16e-53 [+3(6.46e-14)]_14_[-5(9.69e-17)]_25 chr13:66609946-66610081 8.64e-58 22_[+9(3.39e-19)]_46 chr13:78849847-78850156 1.59e-25 2_[+1(2.85e-19)]_18_[-6(9.97e-16)]_\ 24 chr13:95346471-95346578 4.47e-28 28_[-4(7.31e-11)]_[-7(2.03e-11)]_19 chr14:32081424-32081571 1.96e-48 59_[-9(9.39e-19)]_9 chr14:49491734-49491876 3.14e-57 8_[+9(3.39e-19)]_60 chr14:55605291-55605343 9.60e-19 13_[+9(3.47e-15)]_7 chr14:57632709-57632776 2.21e-38 33_[-5(9.97e-18)]_4 chr14:63320465-63320774 6.29e-25 2_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 24 chr14:63612329-63612406 1.94e-34 2_[+8(1.66e-12)]_10_[-5(6.94e-12)]_\ 4 chr14:67150160-67150470 1.33e-24 1_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 25 chr14:100953643-10095372 3.36e-77 8_[+4(8.14e-14)]_6_[+2(9.25e-20)]_\ 10 chr14:102316467-10231654 3.65e-37 22_[-9(1.57e-17)]_20 chr15:18979713-18979842 3.90e-04 8_[-6(3.67e-09)]_67 chr15:23450369-23450473 1.38e-115 5_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 3 chr15:33249309-33249446 3.39e-48 22_[+9(3.49e-17)]_46 chr15:39868931-39869019 2.73e-15 33_[+4(9.72e-06)]_[-8(1.48e-16)]_2 chr15:41246650-41246709 3.83e-01 59 chr15:45277857-45277989 6.62e-75 15_[+7(3.55e-19)]_23_[-8(1.36e-19)] chr15:50706109-50706417 6.29e-25 2_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 24 chr15:57715321-57715416 6.62e-77 13_[+3(3.12e-15)]_14_[-5(7.94e-18)]_\ 7 chr15:69240229-69240313 4.24e-87 15_[+4(8.14e-14)]_6_[+2(9.25e-20)]_\ 10 chr15:72443997-72444109 1.40e-97 6_[+7(3.55e-19)]_26_[-3(2.85e-16)]_\ 6 chr15:92839132-92839211 7.16e-69 8_[-2(6.98e-16)]_15_[-10(3.84e-12)]_\ 3 chr16:4121202-4121294 9.49e-70 5_[+7(1.64e-17)]_19_[-8(1.05e-12)]_\ 6 chr16:6942222-6942291 4.73e-16 15_[-9(1.30e-13)]_22 chr16:11392741-11392841 2.96e-19 22_[-5(3.55e-11)]_48 chr16:11393153-11393293 2.23e-09 14_[+9(1.82e-05)]_27_[+6(1.72e-13)]_\ 2 chr16:14367797-14368099 9.62e-27 5_[+1(1.49e-19)]_18_[-6(3.00e-15)]_\ 21 chr16:22768750-22768843 1.22e-07 17_[+5(5.61e-05)]_9_[+6(1.62e-11)]_\ 12 chr16:33726662-33726781 2.95e-79 8_[+7(2.32e-16)]_26_[-3(5.56e-17)]_\ 4 chr16:34062725-34062789 3.04e-14 16_[-9(4.09e-14)]_16 chr16:34071216-34071277 7.29e-17 14_[-9(2.23e-14)]_15 chr16:36669301-36669387 7.42e-06 13_[-6(3.59e-13)]_48 chr16:49002177-49002284 5.13e-117 2_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 6 chr16:52968181-52968260 1.15e-77 10_[-2(1.76e-19)]_15_\ [-10(2.88e-12)]_1 chr16:59272944-59273048 1.41e-100 7_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 1 chr16:84848873-84849007 3.14e-57 53_[-9(3.39e-19)]_15 chr16:88801921-88801981 5.27e-06 20_[+9(2.01e-09)]_8 chr16:89250746-89250874 1.90e-40 20_[+7(1.66e-15)]_49 chr17:2428447-2428557 1.89e-99 3_[+7(2.97e-17)]_30_[+2(9.25e-20)]_\ 5 chr17:7493921-7493984 9.78e-28 14_[-9(4.85e-19)]_17 chr17:11999926-12000000 4.35e-23 7_[+8(3.97e-11)]_4_[-5(5.80e-08)]_2 chr17:26690618-26690723 1.81e-97 2_[+3(1.23e-19)]_26_[-7(3.55e-19)]_\ 10 chr17:28208166-28208467 2.59e-27 6_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 20 chr17:38950380-38950450 9.68e-35 [-2(7.09e-09)]_[+9(8.51e-13)]_7 chr17:80285977-80286043 9.13e-42 23_[+9(3.39e-19)]_11 chr17:81975759-81975893 4.03e-41 34_[-5(5.61e-16)]_36 chr18:9134754-9134840 2.31e-88 3_[-2(9.25e-20)]_16_[-5(2.35e-18)]_\ 6 chr18:24155488-24155617 2.19e-08 20_[-4(1.69e-06)]_30_[+6(4.22e-10)]_\ 3 chr18:27014348-27014483 3.45e-60 46_[-9(3.39e-19)]_22 chr18:32752778-32752875 3.44e-117 3_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 2 chr18:67506062-67506178 2.86e-105 6_[+7(3.55e-19)]_30_[+2(6.13e-19)]_\ 2 chr18:71893636-71893731 1.03e-51 12_[+7(1.08e-17)]_52 chr19:671532-671594 1.97e-26 2_[+8(6.25e-16)]_29 chr19:7064951-7065038 1.92e-43 18_[+10(6.53e-13)]_14_\ [+2(9.72e-12)]_2 chr19:9411951-9412023 5.86e-43 2_[+3(3.91e-16)]_2_[-4(9.95e-10)]_\ 15 chr19:20929104-20929163 3.20e-27 21_[+9(2.09e-16)]_6 chr19:30202566-30202642 8.09e-43 2_[-2(7.20e-11)]_15_[-10(6.53e-13)]_\ 6 chr19:34154020-34154096 4.87e-62 6_[+10(8.68e-13)]_15_[+2(1.63e-16)]_\ 2 chr19:35747214-35747303 1.26e-77 14_[+3(6.73e-19)]_11_\ [-10(4.44e-13)]_11 chr19:36601947-36602042 2.94e-05 51_[+6(1.97e-12)]_19 chr19:38243056-38243146 5.04e-40 2_[-2(3.30e-09)]_19_[-5(2.17e-14)]_\ 8 chr19:39543119-39543186 7.48e-51 [+10(8.14e-14)]_11_[-3(5.38e-12)]_3 chr19:39608742-39609041 5.63e-31 7_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 19 chr19:41501337-41501438 5.13e-117 5_[-2(9.25e-20)]_30_[-7(3.55e-19)]_\ 3 chr19:45802816-45802934 1.99e-26 21_[+9(1.19e-16)]_47 chr19:46889681-46889771 3.01e-95 10_[+5(1.23e-18)]_18_[+2(9.25e-20)]_\ 1 chr19:49916345-49916448 3.20e-107 9_[+3(1.23e-19)]_14_[-5(4.58e-18)]_\ 16 chr20:5620581-5620720 3.22e-50 21_[+9(3.39e-19)]_47 chr20:9103026-9103132 1.19e-65 [+8(6.69e-18)]_11_[-5(1.23e-18)]_28 chr20:21639806-21639905 4.83e-91 10_[+5(9.97e-18)]_18_[+2(9.66e-19)]_\ 10 chr20:25777376-25777441 1.04e-25 14_[+9(1.07e-16)]_19 chr20:26078445-26078511 2.02e-24 20_[-9(1.07e-16)]_14 chr20:28889642-28889706 1.69e-19 16_[+9(5.82e-15)]_16 chr20:35620409-35620508 9.97e-75 19_[+5(6.31e-17)]_14_[-3(3.95e-14)]_\ 5 chr20:37368513-37368849 6.21e-10 39_[+6(3.00e-15)]_36 chr20:37458444-37458584 8.40e-38 39_[+5(1.17e-15)]_31 chr20:39709002-39709117 2.14e-110 6_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 2 chr20:50694655-50694722 4.09e-37 1_[+10(7.56e-09)]_11_[-3(2.38e-14)]_\ 2 chr21:9246373-9246462 1.36e-25 6_[-10(7.25e-06)]_21_[-9(9.21e-16)]_\ 8 chr21:9582487-9582558 1.21e-12 20_[+9(2.29e-12)]_19 chr21:14191097-14191398 5.30e-28 5_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 21 chr21:40585323-40585449 4.89e-92 11_[+7(3.55e-19)]_26_[-3(2.35e-19)]_\ 1 chr22:22794121-22794256 3.24e-06 5_[-6(1.81e-10)]_30_[+4(4.92e-05)]_\ 18 chr22:28385994-28386304 1.33e-24 1_[+1(1.49e-19)]_18_[-6(9.97e-16)]_\ 25 chr22:34799179-34799292 2.21e-67 3_[+8(5.97e-13)]_23_[-7(3.55e-19)]_\ 12 chr22:36389838-36390147 2.81e-24 1_[+1(1.49e-19)]_18_[-6(3.00e-15)]_\ 25 chr22:47999415-47999472 3.68e-22 25_[-5(1.17e-12)]_2 chr22:48312600-48312710 3.85e-48 3_[+3(3.40e-15)]_2_[-4(7.31e-11)]_\ 42 chr22:50647065-50647135 1.68e-31 9_[+10(7.89e-08)]_8_[-8(8.11e-16)] chrUn_KI270750v1:85959-8 1.21e-12 20_[+9(2.29e-12)]_19 chr3_KI270784v1_alt:1637 1.90e-105 5_[+7(3.58e-18)]_30_[+2(9.25e-20)]_\ 2 chr6_GL000251v2_alt:4783 6.73e-42 [+3(6.39e-16)]_2_[-4(3.52e-12)]_4 chr6_GL000252v2_alt:9782 1.62e-54 19_[+7(3.55e-19)]_50 chr6_GL000253v2_alt:9777 1.62e-54 19_[+7(3.55e-19)]_50 chr6_GL000253v2_alt:2911 3.86e-06 17_[+7(4.50e-13)]_8 chr6_GL000254v2_alt:4807 6.73e-42 [+3(6.39e-16)]_2_[-4(3.52e-12)]_4 chr6_GL000255v2_alt:9781 1.62e-54 19_[+7(3.55e-19)]_50 chr6_GL000255v2_alt:4566 6.73e-42 [+3(6.39e-16)]_2_[-4(3.52e-12)]_4 chr6_KI270800v1_alt:7713 5.39e-85 20_[+4(8.14e-14)]_6_[+2(9.25e-20)] chr18_GL383571v1_alt:151 2.86e-105 6_[+7(3.55e-19)]_30_[+2(6.13e-19)]_\ 2 chr19_GL383573v1_alt:272 3.20e-27 21_[+9(2.09e-16)]_6 chr19_GL383574v1_alt:176 4.87e-62 6_[+10(8.68e-13)]_15_[+2(1.63e-16)]_\ 2 chr19_KI270867v1_alt:188 4.64e-117 4_[+7(3.55e-19)]_30_[+2(9.25e-20)]_\ 4 chr4_GL000008v2_random:2 1.66e-22 16_[-9(8.25e-17)]_8 chr16_KI270728v1_random: 9.72e-46 47_[-9(9.96e-18)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************