******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluJr4.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:19005090-19005190 1.0000 100 chr1:224268510-224268610 1.0000 100 chr2:174367163-174367263 1.0000 100 chr1:158185424-158185524 1.0000 100 chr2:26157824-26157924 1.0000 100 chr1:747790-747844 1.0000 54 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1.0000 100 chr1:16940753-16940853 1.0000 100 chr1:64666606-64666706 1.0000 100 chr1:180048787-180048887 1.0000 100 chr2:203171324-203171424 1.0000 100 chr1:7907365-7907465 1.0000 100 chr2:68646779-68646879 1.0000 100 chr1:84441636-84441736 1.0000 100 chr2:70055796-70055896 1.0000 100 chr2:196855346-196855409 1.0000 63 chr2:203257033-203257128 1.0000 95 chr2:218913599-218913699 1.0000 100 chr2:208094729-208094829 1.0000 100 chr1:180418301-180418401 1.0000 100 chr2:73038489-73038589 1.0000 100 chr1:162042686-162042786 1.0000 100 chr1:234560521-234560621 1.0000 100 chr1:51217236-51217336 1.0000 100 chr1:161236984-161237084 1.0000 100 chr2:168487715-168487815 1.0000 100 chr2:146143028-146143128 1.0000 100 chr2:54074057-54074157 1.0000 100 chr2:38323731-38323817 1.0000 86 chr1:220820863-220820963 1.0000 100 chr1:182173673-182173773 1.0000 100 chr2:172900253-172900353 1.0000 100 chr1:245586198-245586298 1.0000 100 chr2:179851168-179851268 1.0000 100 chr1:237371164-237371264 1.0000 100 chr2:150951827-150951927 1.0000 100 chr2:151276072-151276172 1.0000 100 chr1:184421126-184421226 1.0000 100 chr2:238709723-238709823 1.0000 100 chr1:70212788-70212888 1.0000 100 chr2:134790983-134791083 1.0000 100 chr2:9381451-9381551 1.0000 100 chr2:126004637-126004737 1.0000 100 chr2:3355526-3355626 1.0000 100 chr1:151444819-151444919 1.0000 100 chr2:127240865-127240965 1.0000 100 chr1:58679469-58679569 1.0000 100 chr2:9817025-9817125 1.0000 100 chr2:154046026-154046126 1.0000 100 chr1:53269303-53269403 1.0000 100 chr1:1846625-1846725 1.0000 100 chr1:173800665-173800765 1.0000 100 chr1:234287893-234287993 1.0000 100 chr1:228864173-228864273 1.0000 100 chr1:53369587-53369687 1.0000 100 chr2:32020216-32020316 1.0000 100 chr1:100225863-100225963 1.0000 100 chr2:121269478-121269578 1.0000 100 chr1:240668373-240668473 1.0000 100 chr2:202241231-202241331 1.0000 100 chr1:40024155-40024255 1.0000 100 chr2:24259935-24260035 1.0000 100 chr1:43740504-43740604 1.0000 100 chr2:145250671-145250771 1.0000 100 chr2:23937262-23937362 1.0000 100 chr1:36073760-36073860 1.0000 100 chr2:160518234-160518334 1.0000 100 chr1:6665072-6665172 1.0000 100 chr1:145834857-145834957 1.0000 100 chr1:32574322-32574422 1.0000 100 chr1:19373673-19373773 1.0000 100 chr1:227966034-227966134 1.0000 100 chr2:119040932-119041032 1.0000 100 chr2:204081364-204081464 1.0000 100 chr2:135083460-135083560 1.0000 100 chr2:241333868-241333968 1.0000 100 chr1:28483912-28484012 1.0000 100 chr3:23718886-23718986 1.0000 100 chr1:150587498-150587598 1.0000 100 chr2:42377708-42377808 1.0000 100 chr2:222950531-222950631 1.0000 100 chr2:133822190-133822290 1.0000 100 chr1:45789577-45789677 1.0000 100 chr1:246415640-246415723 1.0000 83 chr1:35635273-35635373 1.0000 100 chr1:168263864-168263964 1.0000 100 chr1:174336121-174336221 1.0000 100 chr1:2346283-2346351 1.0000 68 chr2:17678485-17678585 1.0000 100 chr2:121729569-121729669 1.0000 100 chr1:226052211-226052311 1.0000 100 chr1:53777031-53777131 1.0000 100 chr2:39496016-39496116 1.0000 100 chr1:223831103-223831203 1.0000 100 chr1:169901250-169901350 1.0000 100 chr1:178187800-178187900 1.0000 100 chr1:39772943-39773043 1.0000 100 chr1:224185914-224186014 1.0000 100 chr1:45283143-45283243 1.0000 100 chr1:178268678-178268757 1.0000 79 chr1:42821729-42821829 1.0000 100 chr1:12317598-12317698 1.0000 100 chr1:153914651-153914751 1.0000 100 chr2:170343157-170343257 1.0000 100 chr1:116880117-116880217 1.0000 100 chr2:152145080-152145180 1.0000 100 chr2:148677393-148677493 1.0000 100 chr2:32514073-32514173 1.0000 100 chr1:248706823-248706923 1.0000 100 chr2:186601259-186601359 1.0000 100 chr1:224635719-224635819 1.0000 100 chr2:189778937-189779037 1.0000 100 chr1:239704919-239705019 1.0000 100 chr1:147522905-147523005 1.0000 100 chr1:110979405-110979505 1.0000 100 chr1:6535999-6536064 1.0000 65 chr2:88297004-88297089 1.0000 85 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluJr4.MemeChipResults/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluJr4.MemeChipResults/meme_out -mod anr -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluJr4.MemeChipResults/background -dna -revcomp -nostatus model: mod= anr nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 58857 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.265 C 0.235 G 0.235 T 0.265 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.AluJr4.MemeChipResults/background): A 0.260 C 0.240 G 0.240 T 0.260 ******************************************************************************** ******************************************************************************** MOTIF AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 width = 26 sites = 50 llr = 1522 E-value = 4.5e-413 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 Description -------------------------------------------------------------------------------- Simplified A a:1::1a:::611a::a::5::::a: pos.-specific C :::a1::::6::::::::7:a::::: probability G :99::9:aa:499:aa:::4:::a:a matrix T ::::9::::4:::::::a3::aa::: bits 2.1 ** 1.9 * * *** ***** ****** 1.6 ** * *** ******* ****** 1.4 ********* ******* ****** Relative 1.2 ********* ******* ****** Entropy 1.0 ****************** ****** (43.9 bits) 0.8 ************************** 0.6 ************************** 0.4 ************************** 0.2 ************************** 0.0 -------------------------- Multilevel AGGCTGAGGCAGGAGGATCACTTGAG consensus TG TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------------- chr1:2346283-2346351 + 15 1.85e-16 aagtgctggg aggctgaggcaggaggatcacttgag cccaggagtt chr1:246415640-246415723 - 15 1.85e-16 GCTACTTGGG AGGCTGAGGCAGGAGGATCACTTGAG CCCAATAGTT chr1:182173673-182173773 + 27 1.85e-16 gccctttggg aggctgaggcaggaggatcacttgag gccaggagtt chr2:68646779-68646879 + 66 1.85e-16 gctagttgag aggctgaggcaggaggatcacttgag cccaggaat chr2:138967194-138967294 + 13 1.85e-16 gcactttggg aggctgaggcaggaggatcacttgag cccaggagtt chr2:238869676-238869776 + 73 1.85e-16 gctacttgag aggctgaggcaggaggatcacttgag tc chr2:36607753-36607853 + 14 1.85e-16 attacttggg aggctgaggcaggaggatcacttgag cccaggagtt chr1:19133668-19133768 + 27 1.85e-16 caacactggg aggctgaggcaggaggatcacttgag gccaggagtt chr1:35903577-35903652 + 40 1.85e-16 gctactcagg aggctgaggcaggaggatcacttgag cccaggagtt chr2:231966675-231966775 - 44 1.85e-16 AATATTTGAG AGGCTGAGGCAGGAGGATCACTTGAG GCCAAGAGTT chr1:154235354-154235454 - 63 1.85e-16 GCTACTAGGG AGGCTGAGGCAGGAGGATCACTTGAG CCCAGGAGTC chr1:108186305-108186405 + 63 8.86e-16 agctacttgg aggctgaggtaggaggatcacttgag cccaggaatt chr2:186601259-186601359 + 33 1.07e-15 cctgctcagg aggctgaggtaggaggatcgcttgag ccaggagttg chr1:33173670-33173770 - 9 1.27e-15 GGTACTTGGG AGGCTGAGGCAGGAGGATTACTTGAG CCCCAGGA chr1:39613138-39613238 - 5 1.46e-15 TCTACTCAGG AGGCTGAGGTGGGAGGATCACTTGAG CCGG chr1:225576071-225576171 + 34 1.46e-15 agtacttggg aggctgaggtgggaggatcacttgag ccaggagttc chr2:12183711-12183811 + 65 1.46e-15 gctactttgg aggctgaggtgggaggatcacttgag cccaggaatt chr2:202063622-202063722 - 53 1.64e-15 ACACATTGGG AGGCTGAGGCAGGAGGATTGCTTGAG GCCAGAAGTT chr1:35352116-35352216 + 18 1.81e-15 gcattttggg aggctgaggtgggaggatcgcttgag tccaggagtt chr1:43730558-43730658 - 15 2.59e-15 GCTATTTGAG AGGCTGAGGTAGGAGGATTGCTTGAG CCCATAAGTT chr1:227368137-227368237 + 14 3.35e-15 gccgcttggg aggctgaggtgggaggattgcttgag cccagtttga chr1:89816018-89816118 + 47 3.35e-15 agctcttggg aggctgaggtgggaggattgcttgag ccaagaggtt chr1:382720-382820 + 69 3.35e-15 gctactccgg aggctgaggtgggaggattgcttgag cccagg chr2:114045907-114046007 - 59 5.52e-15 GCACTTTGGG AGACTGAGGCAGGAGGATCGCTTGAG GCCAGGAAGT chr1:39890158-39890258 - 62 5.91e-15 GCACTTTGGG AGGCTGAGGCAGAAGGATCACTTGAG GCCAGGAGTT chr1:66287720-66287820 + 64 5.91e-15 gctacttggg aggctgaggcaggaggatgacttgag tccaggagtt chr1:99988776-99988876 - 11 7.41e-15 GCTACTCAGG AGGCTGAGGCAGGAGGATGGCTTGAG CCCAGGAAGT chr1:54870069-54870169 + 10 9.64e-15 ctacttagg aggctaaggcaggaggattgcttgag ccctggagtt chr1:148687792-148687892 + 66 1.29e-14 gctactcagg aggctgaggtgagaggatcacttgag ccccagagg chr2:229746533-229746633 + 9 1.29e-14 actttggg agactgaggtgggaggatcacttgag gccaggagta chr1:224268510-224268610 - 47 1.46e-14 GCACTTTGGG AGGCTGAGGCAAGAGGATTGCTTGAG GCCAGGAGGT chr1:227363300-227363400 + 27 1.86e-14 gtgctttggg aggctgaggcagaaggattgcttgag cccaggagtt chr2:201025776-201025876 + 18 2.64e-14 gcactttggg aggctgaggtaagaggattgcttgag gccaggagct chr1:46201229-46201329 + 31 2.64e-14 gcactttggg aggctaaggtgggaggattgcttgag gccaggagtt chr1:12317598-12317698 + 10 3.05e-14 cactttggg aggctgaggcgggaggatcacttgat cccaggagtt chr2:25971899-25971999 - 47 3.20e-14 GTATATTGGG AGGGTGAGGTAGGAGGATCACTTGAG GCCAGGAGTT chr1:109276348-109276448 - 49 3.70e-14 CCAGTTTGGG AGGCCAAGGCGGGAGGATCACTTGAG CCTAGGAATT chr1:19555745-19555845 - 60 4.57e-14 GCTATTTGGG AAGCTGAGGTGGGAGGATCACTTGAG CCCAGGAGTT chr2:100145283-100145383 + 28 4.57e-14 gtgctttggg aggctgaggcaggaggattgctcgag gccaggagtt chr1:42821729-42821829 + 73 4.94e-14 gctactaggg agactgaggcaagaggatcacttgag cc chr2:32579435-32579535 + 55 5.73e-14 gctgctcagg aggttgaggtgggaggatcgcttgag actaggattt chr2:201275741-201275841 - 50 6.16e-14 AGACTTTGGG AGGCCAAGGCAGGAGGATTGCTTGAG GCCAGGAGTT chr1:228265785-228265885 + 70 9.04e-14 gctacttggg aggctgaggtgggaggactgcttgag cccag chr1:234554702-234554802 + 25 1.23e-13 gcactttggg aggccgaggcggaaggattgcttgag gccagggttt chr1:241319538-241319638 - 58 2.11e-13 GCATTTTGGG ACGCTGAGGCAGGAGGATCACTTAAG GCCAGGAATT chr1:217611897-217611997 + 73 2.11e-13 gctactcggg agtctgaggcaggaggatcccttgag cc chr3:3021798-3021898 + 21 3.61e-13 gcactttggg aggccaaggcgggaggatctcttgag gccaggagtc chr2:32514073-32514173 + 61 4.11e-13 actacttggg acgctgaggtgggaggatcacttgaa cccaggagtt chr2:70055796-70055896 + 27 6.16e-13 gacacttggg aggccaagacgggaggatcgcttgag gtgaggagtt chr2:88297004-88297089 + 34 1.81e-12 gcaacttggg agactgaagcaggaggatcgtttgag cctgggagtt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:2346283-2346351 1.9e-16 14_[+1]_28 chr1:246415640-246415723 1.9e-16 14_[-1]_43 chr1:182173673-182173773 1.9e-16 26_[+1]_48 chr2:68646779-68646879 1.9e-16 65_[+1]_9 chr2:138967194-138967294 1.9e-16 12_[+1]_62 chr2:238869676-238869776 1.9e-16 72_[+1]_2 chr2:36607753-36607853 1.9e-16 13_[+1]_61 chr1:19133668-19133768 1.9e-16 26_[+1]_48 chr1:35903577-35903652 1.9e-16 39_[+1]_10 chr2:231966675-231966775 1.9e-16 43_[-1]_31 chr1:154235354-154235454 1.9e-16 62_[-1]_12 chr1:108186305-108186405 8.9e-16 62_[+1]_12 chr2:186601259-186601359 1.1e-15 32_[+1]_42 chr1:33173670-33173770 1.3e-15 8_[-1]_66 chr1:39613138-39613238 1.5e-15 4_[-1]_70 chr1:225576071-225576171 1.5e-15 33_[+1]_41 chr2:12183711-12183811 1.5e-15 64_[+1]_10 chr2:202063622-202063722 1.6e-15 52_[-1]_22 chr1:35352116-35352216 1.8e-15 17_[+1]_57 chr1:43730558-43730658 2.6e-15 14_[-1]_60 chr1:227368137-227368237 3.3e-15 13_[+1]_61 chr1:89816018-89816118 3.3e-15 46_[+1]_28 chr1:382720-382820 3.3e-15 68_[+1]_6 chr2:114045907-114046007 5.5e-15 58_[-1]_16 chr1:39890158-39890258 5.9e-15 61_[-1]_13 chr1:66287720-66287820 5.9e-15 63_[+1]_11 chr1:99988776-99988876 7.4e-15 10_[-1]_64 chr1:54870069-54870169 9.6e-15 9_[+1]_65 chr1:148687792-148687892 1.3e-14 65_[+1]_9 chr2:229746533-229746633 1.3e-14 8_[+1]_66 chr1:224268510-224268610 1.5e-14 46_[-1]_28 chr1:227363300-227363400 1.9e-14 26_[+1]_48 chr2:201025776-201025876 2.6e-14 17_[+1]_57 chr1:46201229-46201329 2.6e-14 30_[+1]_44 chr1:12317598-12317698 3e-14 9_[+1]_65 chr2:25971899-25971999 3.2e-14 46_[-1]_28 chr1:109276348-109276448 3.7e-14 48_[-1]_26 chr1:19555745-19555845 4.6e-14 59_[-1]_15 chr2:100145283-100145383 4.6e-14 27_[+1]_47 chr1:42821729-42821829 4.9e-14 72_[+1]_2 chr2:32579435-32579535 5.7e-14 54_[+1]_20 chr2:201275741-201275841 6.2e-14 49_[-1]_25 chr1:228265785-228265885 9e-14 69_[+1]_5 chr1:234554702-234554802 1.2e-13 24_[+1]_50 chr1:241319538-241319638 2.1e-13 57_[-1]_17 chr1:217611897-217611997 2.1e-13 72_[+1]_2 chr3:3021798-3021898 3.6e-13 20_[+1]_54 chr2:32514073-32514173 4.1e-13 60_[+1]_14 chr2:70055796-70055896 6.2e-13 26_[+1]_48 chr2:88297004-88297089 1.8e-12 33_[+1]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGGCTGAGGYRGGAGGATCRCTTGAG width=26 seqs=50 chr1:2346283-2346351 ( 15) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:246415640-246415723 ( 15) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:182173673-182173773 ( 27) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr2:68646779-68646879 ( 66) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr2:138967194-138967294 ( 13) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr2:238869676-238869776 ( 73) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr2:36607753-36607853 ( 14) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:19133668-19133768 ( 27) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:35903577-35903652 ( 40) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr2:231966675-231966775 ( 44) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:154235354-154235454 ( 63) AGGCTGAGGCAGGAGGATCACTTGAG 1 chr1:108186305-108186405 ( 63) AGGCTGAGGTAGGAGGATCACTTGAG 1 chr2:186601259-186601359 ( 33) AGGCTGAGGTAGGAGGATCGCTTGAG 1 chr1:33173670-33173770 ( 9) AGGCTGAGGCAGGAGGATTACTTGAG 1 chr1:39613138-39613238 ( 5) AGGCTGAGGTGGGAGGATCACTTGAG 1 chr1:225576071-225576171 ( 34) AGGCTGAGGTGGGAGGATCACTTGAG 1 chr2:12183711-12183811 ( 65) AGGCTGAGGTGGGAGGATCACTTGAG 1 chr2:202063622-202063722 ( 53) AGGCTGAGGCAGGAGGATTGCTTGAG 1 chr1:35352116-35352216 ( 18) AGGCTGAGGTGGGAGGATCGCTTGAG 1 chr1:43730558-43730658 ( 15) AGGCTGAGGTAGGAGGATTGCTTGAG 1 chr1:227368137-227368237 ( 14) AGGCTGAGGTGGGAGGATTGCTTGAG 1 chr1:89816018-89816118 ( 47) AGGCTGAGGTGGGAGGATTGCTTGAG 1 chr1:382720-382820 ( 69) AGGCTGAGGTGGGAGGATTGCTTGAG 1 chr2:114045907-114046007 ( 59) AGACTGAGGCAGGAGGATCGCTTGAG 1 chr1:39890158-39890258 ( 62) AGGCTGAGGCAGAAGGATCACTTGAG 1 chr1:66287720-66287820 ( 64) AGGCTGAGGCAGGAGGATGACTTGAG 1 chr1:99988776-99988876 ( 11) AGGCTGAGGCAGGAGGATGGCTTGAG 1 chr1:54870069-54870169 ( 10) AGGCTAAGGCAGGAGGATTGCTTGAG 1 chr1:148687792-148687892 ( 66) AGGCTGAGGTGAGAGGATCACTTGAG 1 chr2:229746533-229746633 ( 9) AGACTGAGGTGGGAGGATCACTTGAG 1 chr1:224268510-224268610 ( 47) AGGCTGAGGCAAGAGGATTGCTTGAG 1 chr1:227363300-227363400 ( 27) AGGCTGAGGCAGAAGGATTGCTTGAG 1 chr2:201025776-201025876 ( 18) AGGCTGAGGTAAGAGGATTGCTTGAG 1 chr1:46201229-46201329 ( 31) AGGCTAAGGTGGGAGGATTGCTTGAG 1 chr1:12317598-12317698 ( 10) AGGCTGAGGCGGGAGGATCACTTGAT 1 chr2:25971899-25971999 ( 47) AGGGTGAGGTAGGAGGATCACTTGAG 1 chr1:109276348-109276448 ( 49) AGGCCAAGGCGGGAGGATCACTTGAG 1 chr1:19555745-19555845 ( 60) AAGCTGAGGTGGGAGGATCACTTGAG 1 chr2:100145283-100145383 ( 28) AGGCTGAGGCAGGAGGATTGCTCGAG 1 chr1:42821729-42821829 ( 73) AGACTGAGGCAAGAGGATCACTTGAG 1 chr2:32579435-32579535 ( 55) AGGTTGAGGTGGGAGGATCGCTTGAG 1 chr2:201275741-201275841 ( 50) AGGCCAAGGCAGGAGGATTGCTTGAG 1 chr1:228265785-228265885 ( 70) AGGCTGAGGTGGGAGGACTGCTTGAG 1 chr1:234554702-234554802 ( 25) AGGCCGAGGCGGAAGGATTGCTTGAG 1 chr1:241319538-241319638 ( 58) ACGCTGAGGCAGGAGGATCACTTAAG 1 chr1:217611897-217611997 ( 73) AGTCTGAGGCAGGAGGATCCCTTGAG 1 chr3:3021798-3021898 ( 21) AGGCCAAGGCGGGAGGATCTCTTGAG 1 chr2:32514073-32514173 ( 61) ACGCTGAGGTGGGAGGATCACTTGAA 1 chr2:70055796-70055896 ( 27) AGGCCAAGACGGGAGGATCGCTTGAG 1 chr2:88297004-88297089 ( 34) AGACTGAAGCAGGAGGATCGTTTGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 26 n= 43857 bayes= 11.8841 E= 4.5e-413 195 -1229 -1229 -1229 -369 -259 197 -1229 -170 -1229 190 -369 -1229 200 -358 -369 -1229 -127 -1229 179 -111 -1229 187 -1229 195 -1229 -1229 -1229 -369 -1229 203 -1229 -369 -1229 203 -1229 -1229 137 -1229 55 126 -1229 66 -1229 -170 -1229 194 -1229 -211 -1229 197 -1229 195 -1229 -1229 -1229 -1229 -1229 206 -1229 -1229 -1229 206 -1229 195 -1229 -1229 -1229 -1229 -358 -1229 192 -1229 146 -259 21 106 -358 80 -369 -1229 203 -1229 -369 -1229 -1229 -1229 195 -1229 -358 -1229 192 -369 -1229 203 -1229 195 -1229 -1229 -1229 -369 -1229 200 -369 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 26 nsites= 50 E= 4.5e-413 1.000000 0.000000 0.000000 0.000000 0.020000 0.040000 0.940000 0.000000 0.080000 0.000000 0.900000 0.020000 0.000000 0.960000 0.020000 0.020000 0.000000 0.100000 0.000000 0.900000 0.120000 0.000000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.620000 0.000000 0.380000 0.620000 0.000000 0.380000 0.000000 0.080000 0.000000 0.920000 0.000000 0.060000 0.000000 0.940000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.000000 0.660000 0.040000 0.300000 0.540000 0.020000 0.420000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.020000 0.000000 0.980000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGGCTGAGGYRGGAGGATCRCTTGAG MEME-1 regular expression -------------------------------------------------------------------------------- AGGCTGAGG[CT][AG]GGAGGAT[CT][AG]CTTGAG -------------------------------------------------------------------------------- Time 955.73 secs. ******************************************************************************** ******************************************************************************** MOTIF CTAGCTACTYRGGAGGCTGAGG MEME-2 width = 22 sites = 50 llr = 1331 E-value = 4.2e-340 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:::a:::5::a::::1a1: pos.-specific C a2::a::a:6::::::a::::: probability G :::a::::::5aa:aa::9:9a matrix T :8:::a::a4:::::::a:::: bits 2.1 * 1.9 * ******* ****** * * 1.6 * ******* ********* * 1.4 * ******* *********** Relative 1.2 ********* *********** Entropy 1.0 ********************** (38.4 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTAGCTACTCGGGAGGCTGAGG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:151317810-151317910 - 11 4.39e-14 ACCTAAAGTC CTAGCTACTCGGGAGGCTGAGG CAGGAGGATG chr1:45283143-45283243 - 60 9.15e-14 GTCTGTAGTC CTAGCTACTCAGGAGGCTGAGG CAGGAGCATC chr1:226052211-226052311 + 70 9.15e-14 gcctgtaatc ctagctactcaggaggctgagg tgggaggat chr2:218913599-218913699 - 19 9.15e-14 CCCTGTAGTC CTAGCTACTCAGGAGGCTGAGG TAGGAGGATT chr1:240862967-240863067 - 55 9.15e-14 GCCTATAATC CTAGCTACTCAGGAGGCTGAGG CTAAGAGGAT chr2:174555347-174555447 - 13 9.15e-14 GCCTATACTC CTAGCTACTCAGGAGGCTGAGG CAGGAGGATC chr1:23852142-23852242 + 64 9.15e-14 acctgtagtt ctagctactcaggaggctgagg tgggaggacc chr2:55526433-55526533 - 23 9.15e-14 ACCTATAGTC CTAGCTACTCAGGAGGCTGAGG CAGGAGATTC chr1:62677848-62677948 + 58 9.15e-14 acctgtagtt ctagctactcaggaggctgagg tgagaggaca chr1:215935824-215935924 + 55 9.15e-14 gcctgtagtt ctagctactcaggaggctgagg tgggagaatc chr2:186673972-186674072 - 14 9.15e-14 ACCTATAATC CTAGCTACTCAGGAGGCTGAGG CAGGAGGATT chr2:74399260-74399360 - 14 9.15e-14 GCCTGCAATC CTAGCTACTCAGGAGGCTGAGG CAGAAGGATT chr2:38725580-38725637 + 18 9.15e-14 acctgtagtc ctagctactcaggaggctgagg caggaggatc chr2:238175115-238175215 - 16 9.15e-14 ACCTGTAGTT CTAGCTACTCAGGAGGCTGAGG TGGGAGGATC chr2:17678485-17678585 + 63 1.39e-13 acctatactc ctagctacttgggaggctgagg caggagggtc chr2:29233131-29233231 - 18 1.39e-13 ACCTGTAGTC CTAGCTACTTGGGAGGCTGAGG CAGGAGGATC chr1:18930888-18930988 + 68 1.39e-13 acctgtagtc ctagctacttgggaggctgagg ttggaggatc chr2:219607374-219607474 + 59 1.39e-13 gcctgtagtc ctagctacttgggaggctgagg caggaggatc chr1:44087249-44087349 - 14 1.39e-13 ACCTGTAGTC CTAGCTACTTGGGAGGCTGAGG TAGGAGGATC chr3:15031396-15031496 - 13 1.39e-13 GCCTATAGTC CTAGCTACTTGGGAGGCTGAGG CAGGAGGATC chr2:170910601-170910701 - 27 1.91e-13 ACCTGTAGTC CTAGCTACTTAGGAGGCTGAGG CAGAAAGATC chr1:234560521-234560621 - 23 2.31e-13 GCCTGTCGTC CCAGCTACTCGGGAGGCTGAGG AAAAGGATGG chr1:92116857-92116957 - 9 2.75e-13 GCCTGCAGTC CCAGCTACTCAGGAGGCTGAGG CCAGAGGA chr2:160784714-160784814 + 76 2.75e-13 gcatgtagtc ccagctactcaggaggctgagg tgg chr2:129060478-129060578 - 37 3.67e-13 CCCTGTGCTC CCAGCTACTTAGGAGGCTGAGG TAGAAAGATT chr2:87767755-87767855 - 26 4.62e-13 GCCCATAGTC CTAGCTACTCGGGAGGCTAAGG CAGCAGGATT chr1:178268678-178268757 - 29 5.65e-13 GCCTGTCGTC CTAGCTACTCAGGAGGCTAAGG CAGGGGGGTC chr2:84857872-84857972 - 14 5.65e-13 GCCTGTAGTC CTAGCTACTCAGGAGGCTAAGG CAGGAAGATC chr2:179353450-179353550 + 67 5.65e-13 gcctatagtt ctagctactcaggaggctgaag caggaggact chr2:227371364-227371464 - 9 5.65e-13 ACCTGTGGTC CTAGCTACTCAGGAGGCTAAGG CAGGAGGA chr1:7761882-7761982 + 79 5.65e-13 tacctgtagt ctagctactcaggaggctaagg chr1:168981497-168981597 + 68 6.68e-13 gtctatagtc ctagctacttgggaggctgaag caggaggatc chr1:96727997-96728097 - 9 6.68e-13 GCCTATAGTC CTAGCTACTTGGGAGGCTGAAG CAGGAGCC chr2:60865771-60865871 - 45 6.68e-13 GCCTGTAGTC CTAGCTACTTGGGAGGCTGAAG TGGGAGGATT chr2:127914088-127914188 + 70 8.64e-13 acctacagtc ctagctactcaggaggccgagg caggaagat chr3:21977536-21977636 + 69 1.19e-12 gtctatggtc ccagctactcgggaggctgaag caagaggatc chr1:84441636-84441736 - 14 1.66e-12 TCCTGTAGCC CTAGCTTCTCGGGAGGCTGAGG TGAGAAGATT chr1:44520892-44520992 - 19 1.66e-12 ACCTGTAGTC CTAGTTACTTGGGAGGCTGAGG TGAGAGGATC chr2:230731514-230731614 - 13 1.66e-12 GTCTGTAGTC CTAGCTACTTGAGAGGCTGAGG AGGGACGATT chr1:77709226-77709326 + 74 2.20e-12 atctgtagtc ctagctactcgggatgctgagg cagga chr2:196642734-196642834 - 15 2.90e-12 GCCTGTAGCC CTAGCTACTTGGGAGGCTGACG CAGGAGGATC chr2:24259935-24260035 - 7 3.64e-12 GCCTGTAGTA CTAGCTACTTGGGAGGTTGAGG TGGGAG chr2:9817025-9817125 - 9 3.64e-12 GCCTGTAGTC CTAACTACTTGGGAGGCTGAGG TGGGAGGA chr1:247413754-247413854 - 18 3.64e-12 CACCTGTAGC CCAGCTACTCAGGAGGCCGAGG CAAGAAGATC chr2:162468854-162468954 - 17 3.64e-12 ACCTGTAGTC CTAGCTACTTGGGAAGCTGAGG AGGGAGGGTC chr1:230628625-230628725 - 8 5.41e-12 GCCCGTAGTC CCAGCTACTCGGGAGGCTGAGA TGGGAGG chr1:23427187-23427287 + 64 5.41e-12 gcctatagtc ccagctactcggaaggctgagg caggaggctt chr1:39863183-39863283 + 67 6.40e-12 cacgtgcctc ccggctacttgggaggctgagg caggaggact chr2:206059921-206060021 + 62 1.64e-11 gcctgtagtc ctagttactcgggagactgagg caagaggatc chr1:70068716-70068816 - 55 1.64e-11 ACCTGCAGTC TTAGCTACTCGAGAGGCTGAGG TAGGAGGATC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:151317810-151317910 4.4e-14 10_[-2]_68 chr1:45283143-45283243 9.2e-14 59_[-2]_19 chr1:226052211-226052311 9.2e-14 69_[+2]_9 chr2:218913599-218913699 9.2e-14 18_[-2]_60 chr1:240862967-240863067 9.2e-14 54_[-2]_24 chr2:174555347-174555447 9.2e-14 12_[-2]_66 chr1:23852142-23852242 9.2e-14 63_[+2]_15 chr2:55526433-55526533 9.2e-14 22_[-2]_56 chr1:62677848-62677948 9.2e-14 57_[+2]_21 chr1:215935824-215935924 9.2e-14 54_[+2]_24 chr2:186673972-186674072 9.2e-14 13_[-2]_65 chr2:74399260-74399360 9.2e-14 13_[-2]_65 chr2:38725580-38725637 9.2e-14 17_[+2]_18 chr2:238175115-238175215 9.2e-14 15_[-2]_63 chr2:17678485-17678585 1.4e-13 62_[+2]_16 chr2:29233131-29233231 1.4e-13 17_[-2]_61 chr1:18930888-18930988 1.4e-13 67_[+2]_11 chr2:219607374-219607474 1.4e-13 58_[+2]_20 chr1:44087249-44087349 1.4e-13 13_[-2]_65 chr3:15031396-15031496 1.4e-13 12_[-2]_66 chr2:170910601-170910701 1.9e-13 26_[-2]_52 chr1:234560521-234560621 2.3e-13 22_[-2]_56 chr1:92116857-92116957 2.8e-13 8_[-2]_70 chr2:160784714-160784814 2.8e-13 75_[+2]_3 chr2:129060478-129060578 3.7e-13 36_[-2]_42 chr2:87767755-87767855 4.6e-13 25_[-2]_53 chr1:178268678-178268757 5.6e-13 28_[-2]_29 chr2:84857872-84857972 5.6e-13 13_[-2]_65 chr2:179353450-179353550 5.6e-13 66_[+2]_12 chr2:227371364-227371464 5.6e-13 8_[-2]_70 chr1:7761882-7761982 5.6e-13 78_[+2] chr1:168981497-168981597 6.7e-13 67_[+2]_11 chr1:96727997-96728097 6.7e-13 8_[-2]_70 chr2:60865771-60865871 6.7e-13 44_[-2]_34 chr2:127914088-127914188 8.6e-13 69_[+2]_9 chr3:21977536-21977636 1.2e-12 68_[+2]_10 chr1:84441636-84441736 1.7e-12 13_[-2]_65 chr1:44520892-44520992 1.7e-12 18_[-2]_60 chr2:230731514-230731614 1.7e-12 12_[-2]_66 chr1:77709226-77709326 2.2e-12 73_[+2]_5 chr2:196642734-196642834 2.9e-12 14_[-2]_64 chr2:24259935-24260035 3.6e-12 6_[-2]_72 chr2:9817025-9817125 3.6e-12 8_[-2]_70 chr1:247413754-247413854 3.6e-12 17_[-2]_61 chr2:162468854-162468954 3.6e-12 16_[-2]_62 chr1:230628625-230628725 5.4e-12 7_[-2]_71 chr1:23427187-23427287 5.4e-12 63_[+2]_15 chr1:39863183-39863283 6.4e-12 66_[+2]_12 chr2:206059921-206060021 1.6e-11 61_[+2]_17 chr1:70068716-70068816 1.6e-11 54_[-2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTAGCTACTYRGGAGGCTGAGG width=22 seqs=50 chr1:151317810-151317910 ( 11) CTAGCTACTCGGGAGGCTGAGG 1 chr1:45283143-45283243 ( 60) CTAGCTACTCAGGAGGCTGAGG 1 chr1:226052211-226052311 ( 70) CTAGCTACTCAGGAGGCTGAGG 1 chr2:218913599-218913699 ( 19) CTAGCTACTCAGGAGGCTGAGG 1 chr1:240862967-240863067 ( 55) CTAGCTACTCAGGAGGCTGAGG 1 chr2:174555347-174555447 ( 13) CTAGCTACTCAGGAGGCTGAGG 1 chr1:23852142-23852242 ( 64) CTAGCTACTCAGGAGGCTGAGG 1 chr2:55526433-55526533 ( 23) CTAGCTACTCAGGAGGCTGAGG 1 chr1:62677848-62677948 ( 58) CTAGCTACTCAGGAGGCTGAGG 1 chr1:215935824-215935924 ( 55) CTAGCTACTCAGGAGGCTGAGG 1 chr2:186673972-186674072 ( 14) CTAGCTACTCAGGAGGCTGAGG 1 chr2:74399260-74399360 ( 14) CTAGCTACTCAGGAGGCTGAGG 1 chr2:38725580-38725637 ( 18) CTAGCTACTCAGGAGGCTGAGG 1 chr2:238175115-238175215 ( 16) CTAGCTACTCAGGAGGCTGAGG 1 chr2:17678485-17678585 ( 63) CTAGCTACTTGGGAGGCTGAGG 1 chr2:29233131-29233231 ( 18) CTAGCTACTTGGGAGGCTGAGG 1 chr1:18930888-18930988 ( 68) CTAGCTACTTGGGAGGCTGAGG 1 chr2:219607374-219607474 ( 59) CTAGCTACTTGGGAGGCTGAGG 1 chr1:44087249-44087349 ( 14) CTAGCTACTTGGGAGGCTGAGG 1 chr3:15031396-15031496 ( 13) CTAGCTACTTGGGAGGCTGAGG 1 chr2:170910601-170910701 ( 27) CTAGCTACTTAGGAGGCTGAGG 1 chr1:234560521-234560621 ( 23) CCAGCTACTCGGGAGGCTGAGG 1 chr1:92116857-92116957 ( 9) CCAGCTACTCAGGAGGCTGAGG 1 chr2:160784714-160784814 ( 76) CCAGCTACTCAGGAGGCTGAGG 1 chr2:129060478-129060578 ( 37) CCAGCTACTTAGGAGGCTGAGG 1 chr2:87767755-87767855 ( 26) CTAGCTACTCGGGAGGCTAAGG 1 chr1:178268678-178268757 ( 29) CTAGCTACTCAGGAGGCTAAGG 1 chr2:84857872-84857972 ( 14) CTAGCTACTCAGGAGGCTAAGG 1 chr2:179353450-179353550 ( 67) CTAGCTACTCAGGAGGCTGAAG 1 chr2:227371364-227371464 ( 9) CTAGCTACTCAGGAGGCTAAGG 1 chr1:7761882-7761982 ( 79) CTAGCTACTCAGGAGGCTAAGG 1 chr1:168981497-168981597 ( 68) CTAGCTACTTGGGAGGCTGAAG 1 chr1:96727997-96728097 ( 9) CTAGCTACTTGGGAGGCTGAAG 1 chr2:60865771-60865871 ( 45) CTAGCTACTTGGGAGGCTGAAG 1 chr2:127914088-127914188 ( 70) CTAGCTACTCAGGAGGCCGAGG 1 chr3:21977536-21977636 ( 69) CCAGCTACTCGGGAGGCTGAAG 1 chr1:84441636-84441736 ( 14) CTAGCTTCTCGGGAGGCTGAGG 1 chr1:44520892-44520992 ( 19) CTAGTTACTTGGGAGGCTGAGG 1 chr2:230731514-230731614 ( 13) CTAGCTACTTGAGAGGCTGAGG 1 chr1:77709226-77709326 ( 74) CTAGCTACTCGGGATGCTGAGG 1 chr2:196642734-196642834 ( 15) CTAGCTACTTGGGAGGCTGACG 1 chr2:24259935-24260035 ( 7) CTAGCTACTTGGGAGGTTGAGG 1 chr2:9817025-9817125 ( 9) CTAACTACTTGGGAGGCTGAGG 1 chr1:247413754-247413854 ( 18) CCAGCTACTCAGGAGGCCGAGG 1 chr2:162468854-162468954 ( 17) CTAGCTACTTGGGAAGCTGAGG 1 chr1:230628625-230628725 ( 8) CCAGCTACTCGGGAGGCTGAGA 1 chr1:23427187-23427287 ( 64) CCAGCTACTCGGAAGGCTGAGG 1 chr1:39863183-39863283 ( 67) CCGGCTACTTGGGAGGCTGAGG 1 chr2:206059921-206060021 ( 62) CTAGTTACTCGGGAGACTGAGG 1 chr1:70068716-70068816 ( 55) TTAGCTACTCGAGAGGCTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 46257 bayes= 9.85197 E= 4.2e-340 -1229 203 -1229 -369 -1229 -42 -1229 166 192 -1229 -358 -1229 -369 -1229 203 -1229 -1229 200 -1229 -270 -1229 -1229 -1229 195 192 -1229 -1229 -369 -1229 206 -1229 -1229 -1229 -1229 -1229 195 -1229 141 -1229 47 89 -1229 111 -1229 -270 -1229 200 -1229 -369 -1229 203 -1229 195 -1229 -1229 -1229 -369 -1229 200 -369 -369 -1229 203 -1229 -1229 203 -1229 -369 -1229 -259 -1229 189 -138 -1229 190 -1229 195 -1229 -1229 -1229 -138 -358 187 -1229 -369 -1229 203 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 4.2e-340 0.000000 0.980000 0.000000 0.020000 0.000000 0.180000 0.000000 0.820000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.980000 0.000000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.640000 0.000000 0.360000 0.480000 0.000000 0.520000 0.000000 0.040000 0.000000 0.960000 0.000000 0.020000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.960000 0.020000 0.020000 0.000000 0.980000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.040000 0.000000 0.960000 0.100000 0.000000 0.900000 0.000000 1.000000 0.000000 0.000000 0.000000 0.100000 0.020000 0.880000 0.000000 0.020000 0.000000 0.980000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTAGCTACTYRGGAGGCTGAGG MEME-2 regular expression -------------------------------------------------------------------------------- CTAGCTACT[CT][GA]GGAGGCTGAGG -------------------------------------------------------------------------------- Time 1891.35 secs. ******************************************************************************** ******************************************************************************** MOTIF TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 width = 27 sites = 50 llr = 1462 E-value = 1.7e-385 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a1::::a1::9::15:1a1:::1a:1 pos.-specific C ::::9a3::91:9:5::::::9::::: probability G ::9:::::9::1:::4a9:9a::9:a9 matrix T a::a1:7::19:1a41:::::1a:::: bits 2.1 1.9 ** * * * * * * ** 1.6 ****** * ** * * * * ** 1.4 ****** * **** *********** Relative 1.2 ****** ******* *********** Entropy 1.0 ************** *********** (42.2 bits) 0.8 ************** *********** 0.6 *************************** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel TAGTCCTAGCTACTCAGGAGGCTGAGG consensus C TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr1:158185424-158185524 + 58 4.19e-16 tgagcgcctg tagtcctagctactctggaggctgagg tgggaggatc chr2:189778937-189779037 + 41 1.19e-15 cacacaccta tagtcctagctacttggaaggctgagg caggaagatc chr1:244951448-244951548 + 64 1.19e-15 cacacacctg tagtcctagttactcaggaggctgagg caagaggatc chr1:50507457-50507557 + 53 1.65e-15 aattagcctg tagtcctagctactcaggaagctgagg tgggaggctg chr2:25425939-25426029 + 6 2.09e-15 gcctg tagtcctagccactcaggaggctgagg aaggaggatc chr2:216625494-216625594 - 14 2.09e-15 GGGGTGCCTG TAGTCCTAGCCACTCAGGAGGCTGAGG TAGGAGGATG chr1:65006354-65006454 - 23 3.48e-15 CAAGCACCTG TAGTCCTACCTACTCAGGAGGCTGAGG CAGGACGATC chr2:26157824-26157924 - 16 3.48e-15 TACATACCTG TAGTCCCAGCTACTAGGGAGGCTGAGG CAGGAGGATC chr3:23718886-23718986 - 12 4.16e-15 CATGCACCTG TAGTCCCAGTTACTCAGGAGGCTGAGG CAGGAGGATT chr1:205876803-205876903 - 10 4.16e-15 TGCGCACCTG TAGTCCCAGCTACTCAGGAGGCTGAGA CAGGAGGAT chr2:111755136-111755236 + 63 4.16e-15 catgcacctg tagtcctagctactcaggaggatgagg tgggaggatt chr1:101271448-101271548 + 67 5.74e-15 catatgcctg tagtccaagctactcaggaggctgagg caggagg chr2:133822190-133822290 + 62 6.97e-15 tgtgtacctg tagtcccagctattcaggaggctgagg caggaggatc chr1:62339925-62340025 + 62 6.97e-15 tgcatgcctg tagtcccagctgcttgggaggctgagg tgggaggatg chr1:230896190-230896290 + 63 6.97e-15 catatacctg tagtcccagctattcaggaggctgagg caggaggatc chr2:196163756-196163856 + 70 6.97e-15 ctcgcacctg tagtcccagctgcttgggaggctgagg cagg chr2:32189596-32189696 - 25 8.06e-15 GATGTGCCTG TAGTCCTAGCAACTCAGGAGGCTGAGG CAGGAGAGCC chr2:205974157-205974257 + 24 8.06e-15 cacacacctg tagtcctagctactcaggaggctgagt tgggaggagc chr1:74428652-74428752 + 66 8.06e-15 tgtgtgcctg tagtccttgctactcaggaggctgagg tgggagga chr1:92714600-92714700 - 8 9.22e-15 CATGTTCCTG TAGTCCTAGCTACCTAGGAGGCTGAGG CAGAAGT chr1:112586147-112586247 + 64 1.05e-14 tgtgcacctg tagtcctagttactttggaggctgagg caagaggatt chr2:32020216-32020316 + 71 1.27e-14 agtataccta tagtcctagctacttggaaggctaagg caa chr1:199893109-199893209 + 56 1.77e-14 catgtgcctg tagtcccagctactcaggaggcttagg caggaggatc chr1:65321199-65321299 - 17 1.77e-14 TGCATGCCTG TAGTCCTAGCTACTTGGAAAGCTGAGG CAGGAGCCTT chr2:8919757-8919857 - 8 2.21e-14 CGCACACCTG TAGTCCTAGCTGCTTGGGAGGCTAAGG CAGGGAG chr1:232076072-232076172 - 9 2.21e-14 TGGGTGCCTG TAGTCCTAATTACTTGGGAGGCTGAGG CAGGAGGA chr1:39939305-39939405 - 47 2.21e-14 TGCACCCCTG TAGTCCTAGCCACTCAGGAGGCTGAGA TGGGAGGATT chr2:97779734-97779834 + 66 2.21e-14 cacacacctg tagttctagctactcagaaggctgagg caggagga chr1:83482696-83482796 + 74 2.34e-14 cacttgcctg taatcctagctactagggaggctgagg chr1:235231825-235231925 + 70 2.34e-14 catgtgcctg tagtcccagctacttgggagtctgagg cagg chr2:42540553-42540653 + 57 3.17e-14 tgcatgcctg tagtcctacctacttggaaggctgagg tagaagaatc chr2:61496211-61496311 - 16 3.17e-14 TGCACACCTG TAGTTCCAGCTACTCTGGAGGCTGAGG CAATAGGATC chr2:179851168-179851268 + 58 4.17e-14 tgcacacctg tagtcctagctactttgtaggctgagg tggaagggtc chr2:86686689-86686789 - 6 4.46e-14 CACATGCCTG TAGTCCTAGCTACTCTGAAGGCTAAGG CAGGA chr1:239681613-239681713 + 68 4.96e-14 tgcacacctg tagtcctaaatacttgggaggctgagg tgggag chr1:155106044-155106144 + 45 6.25e-14 tacgtacctg tagtcctagcttctagggaggctgagg tgggagcatc chr1:45789577-45789677 - 15 7.69e-14 CACATACCTG TAGTCCTAGCTACTTGGGAGGTTGAAG CAGGAGAATC chr1:111218952-111219052 - 12 9.18e-14 CATACACCTG TAGTCCCAGCTACTTGAGAGGCTAAGG CAGGAGGATT chr1:238328964-238329064 + 69 9.92e-14 agtgtgcctg tagtcctaactacatgggaggctgagg cagga chr2:124971210-124971310 - 16 9.92e-14 GGCAAGCCTG TAGTTCCAGCTACTCAGGAGGTTGAGG CAGGAGAATT chr1:164738307-164738407 - 8 1.41e-13 CACATGCCTA TAATCCTATCTACTTGGGAGGCTGAGG CAGCAGT chr2:203518564-203518664 + 63 1.55e-13 catgtgcctg tagtcctagttacttgggaagctaagg taggaggatc chr1:234287893-234287993 - 11 1.67e-13 TGCACACCTG TAGTCCTAGATACTTGGGGGGCTGAGG CAGGAGGACT chr1:83956154-83956254 - 44 1.67e-13 TGTACACCTG TAGTCCCAGCTACTTGGGAGGTTGAAG CAGGAGGATT chr1:25519019-25519119 - 13 1.81e-13 TCCATGCCTG TAGTCCTAACTACTCAGGAAGCTGAGA TGAGTGGATG chr3:23430516-23430616 - 14 2.21e-13 CACATGCCTG TAGTCCTAGCTACTCAGGAGGATAAGA CAGGAAGACT chr1:206533473-206533573 + 61 2.63e-13 cacacacctg tagtcctagctactcaggacactgagg taggatgatg chr1:231167956-231168056 - 11 2.63e-13 GGTGTGCCTG TAGTCCTGGCTACTTGGGAGGCGGAGG TGGGAGGATC chr2:42377708-42377808 + 65 4.17e-13 tgagcacctg taatcctagctactgaggaggctgaga caggagaac chr1:145834857-145834957 + 63 3.11e-12 catatgcctg tagtcacagctattcgagaggctgagg caggaggatt -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:158185424-158185524 4.2e-16 57_[+3]_16 chr2:189778937-189779037 1.2e-15 40_[+3]_33 chr1:244951448-244951548 1.2e-15 63_[+3]_10 chr1:50507457-50507557 1.7e-15 52_[+3]_21 chr2:25425939-25426029 2.1e-15 5_[+3]_58 chr2:216625494-216625594 2.1e-15 13_[-3]_60 chr1:65006354-65006454 3.5e-15 22_[-3]_51 chr2:26157824-26157924 3.5e-15 15_[-3]_58 chr3:23718886-23718986 4.2e-15 11_[-3]_62 chr1:205876803-205876903 4.2e-15 9_[-3]_64 chr2:111755136-111755236 4.2e-15 62_[+3]_11 chr1:101271448-101271548 5.7e-15 66_[+3]_7 chr2:133822190-133822290 7e-15 61_[+3]_12 chr1:62339925-62340025 7e-15 61_[+3]_12 chr1:230896190-230896290 7e-15 62_[+3]_11 chr2:196163756-196163856 7e-15 69_[+3]_4 chr2:32189596-32189696 8.1e-15 24_[-3]_49 chr2:205974157-205974257 8.1e-15 23_[+3]_50 chr1:74428652-74428752 8.1e-15 65_[+3]_8 chr1:92714600-92714700 9.2e-15 7_[-3]_66 chr1:112586147-112586247 1.1e-14 63_[+3]_10 chr2:32020216-32020316 1.3e-14 70_[+3]_3 chr1:199893109-199893209 1.8e-14 55_[+3]_18 chr1:65321199-65321299 1.8e-14 16_[-3]_57 chr2:8919757-8919857 2.2e-14 7_[-3]_66 chr1:232076072-232076172 2.2e-14 8_[-3]_65 chr1:39939305-39939405 2.2e-14 46_[-3]_27 chr2:97779734-97779834 2.2e-14 65_[+3]_8 chr1:83482696-83482796 2.3e-14 73_[+3] chr1:235231825-235231925 2.3e-14 69_[+3]_4 chr2:42540553-42540653 3.2e-14 56_[+3]_17 chr2:61496211-61496311 3.2e-14 15_[-3]_58 chr2:179851168-179851268 4.2e-14 57_[+3]_16 chr2:86686689-86686789 4.5e-14 5_[-3]_68 chr1:239681613-239681713 5e-14 67_[+3]_6 chr1:155106044-155106144 6.2e-14 44_[+3]_29 chr1:45789577-45789677 7.7e-14 14_[-3]_59 chr1:111218952-111219052 9.2e-14 11_[-3]_62 chr1:238328964-238329064 9.9e-14 68_[+3]_5 chr2:124971210-124971310 9.9e-14 15_[-3]_58 chr1:164738307-164738407 1.4e-13 7_[-3]_66 chr2:203518564-203518664 1.5e-13 62_[+3]_11 chr1:234287893-234287993 1.7e-13 10_[-3]_63 chr1:83956154-83956254 1.7e-13 43_[-3]_30 chr1:25519019-25519119 1.8e-13 12_[-3]_61 chr3:23430516-23430616 2.2e-13 13_[-3]_60 chr1:206533473-206533573 2.6e-13 60_[+3]_13 chr1:231167956-231168056 2.6e-13 10_[-3]_63 chr2:42377708-42377808 4.2e-13 64_[+3]_9 chr1:145834857-145834957 3.1e-12 62_[+3]_11 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAGTCCTAGCTACTYRGGAGGCTGAGG width=27 seqs=50 chr1:158185424-158185524 ( 58) TAGTCCTAGCTACTCTGGAGGCTGAGG 1 chr2:189778937-189779037 ( 41) TAGTCCTAGCTACTTGGAAGGCTGAGG 1 chr1:244951448-244951548 ( 64) TAGTCCTAGTTACTCAGGAGGCTGAGG 1 chr1:50507457-50507557 ( 53) TAGTCCTAGCTACTCAGGAAGCTGAGG 1 chr2:25425939-25426029 ( 6) TAGTCCTAGCCACTCAGGAGGCTGAGG 1 chr2:216625494-216625594 ( 14) TAGTCCTAGCCACTCAGGAGGCTGAGG 1 chr1:65006354-65006454 ( 23) TAGTCCTACCTACTCAGGAGGCTGAGG 1 chr2:26157824-26157924 ( 16) TAGTCCCAGCTACTAGGGAGGCTGAGG 1 chr3:23718886-23718986 ( 12) TAGTCCCAGTTACTCAGGAGGCTGAGG 1 chr1:205876803-205876903 ( 10) TAGTCCCAGCTACTCAGGAGGCTGAGA 1 chr2:111755136-111755236 ( 63) TAGTCCTAGCTACTCAGGAGGATGAGG 1 chr1:101271448-101271548 ( 67) TAGTCCAAGCTACTCAGGAGGCTGAGG 1 chr2:133822190-133822290 ( 62) TAGTCCCAGCTATTCAGGAGGCTGAGG 1 chr1:62339925-62340025 ( 62) TAGTCCCAGCTGCTTGGGAGGCTGAGG 1 chr1:230896190-230896290 ( 63) TAGTCCCAGCTATTCAGGAGGCTGAGG 1 chr2:196163756-196163856 ( 70) TAGTCCCAGCTGCTTGGGAGGCTGAGG 1 chr2:32189596-32189696 ( 25) TAGTCCTAGCAACTCAGGAGGCTGAGG 1 chr2:205974157-205974257 ( 24) TAGTCCTAGCTACTCAGGAGGCTGAGT 1 chr1:74428652-74428752 ( 66) TAGTCCTTGCTACTCAGGAGGCTGAGG 1 chr1:92714600-92714700 ( 8) TAGTCCTAGCTACCTAGGAGGCTGAGG 1 chr1:112586147-112586247 ( 64) TAGTCCTAGTTACTTTGGAGGCTGAGG 1 chr2:32020216-32020316 ( 71) TAGTCCTAGCTACTTGGAAGGCTAAGG 1 chr1:199893109-199893209 ( 56) TAGTCCCAGCTACTCAGGAGGCTTAGG 1 chr1:65321199-65321299 ( 17) TAGTCCTAGCTACTTGGAAAGCTGAGG 1 chr2:8919757-8919857 ( 8) TAGTCCTAGCTGCTTGGGAGGCTAAGG 1 chr1:232076072-232076172 ( 9) TAGTCCTAATTACTTGGGAGGCTGAGG 1 chr1:39939305-39939405 ( 47) TAGTCCTAGCCACTCAGGAGGCTGAGA 1 chr2:97779734-97779834 ( 66) TAGTTCTAGCTACTCAGAAGGCTGAGG 1 chr1:83482696-83482796 ( 74) TAATCCTAGCTACTAGGGAGGCTGAGG 1 chr1:235231825-235231925 ( 70) TAGTCCCAGCTACTTGGGAGTCTGAGG 1 chr2:42540553-42540653 ( 57) TAGTCCTACCTACTTGGAAGGCTGAGG 1 chr2:61496211-61496311 ( 16) TAGTTCCAGCTACTCTGGAGGCTGAGG 1 chr2:179851168-179851268 ( 58) TAGTCCTAGCTACTTTGTAGGCTGAGG 1 chr2:86686689-86686789 ( 6) TAGTCCTAGCTACTCTGAAGGCTAAGG 1 chr1:239681613-239681713 ( 68) TAGTCCTAAATACTTGGGAGGCTGAGG 1 chr1:155106044-155106144 ( 45) TAGTCCTAGCTTCTAGGGAGGCTGAGG 1 chr1:45789577-45789677 ( 15) TAGTCCTAGCTACTTGGGAGGTTGAAG 1 chr1:111218952-111219052 ( 12) TAGTCCCAGCTACTTGAGAGGCTAAGG 1 chr1:238328964-238329064 ( 69) TAGTCCTAACTACATGGGAGGCTGAGG 1 chr2:124971210-124971310 ( 16) TAGTTCCAGCTACTCAGGAGGTTGAGG 1 chr1:164738307-164738407 ( 8) TAATCCTATCTACTTGGGAGGCTGAGG 1 chr2:203518564-203518664 ( 63) TAGTCCTAGTTACTTGGGAAGCTAAGG 1 chr1:234287893-234287993 ( 11) TAGTCCTAGATACTTGGGGGGCTGAGG 1 chr1:83956154-83956254 ( 44) TAGTCCCAGCTACTTGGGAGGTTGAAG 1 chr1:25519019-25519119 ( 13) TAGTCCTAACTACTCAGGAAGCTGAGA 1 chr3:23430516-23430616 ( 14) TAGTCCTAGCTACTCAGGAGGATAAGA 1 chr1:206533473-206533573 ( 61) TAGTCCTAGCTACTCAGGACACTGAGG 1 chr1:231167956-231168056 ( 11) TAGTCCTGGCTACTTGGGAGGCGGAGG 1 chr2:42377708-42377808 ( 65) TAATCCTAGCTACTGAGGAGGCTGAGA 1 chr1:145834857-145834957 ( 63) TAGTCACAGCTATTCGAGAGGCTGAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 43257 bayes= 11.8642 E= 1.7e-385 -1229 -1229 -1229 195 195 -1229 -1229 -1229 -211 -1229 197 -1229 -1229 -1229 -1229 195 -1229 197 -1229 -211 -369 203 -1229 -1229 -369 22 -1229 143 189 -1229 -358 -369 -170 -259 184 -369 -270 184 -1229 -138 -369 -200 -1229 183 183 -1229 -200 -369 -1229 197 -1229 -211 -369 -358 -1229 189 -211 106 -358 69 83 -1229 87 -138 -270 -1229 200 -1229 -111 -1229 184 -369 192 -1229 -358 -1229 -170 -358 190 -1229 -369 -1229 200 -369 -270 190 -1229 -211 -1229 -1229 -358 192 -111 -1229 184 -369 195 -1229 -1229 -1229 -270 -1229 200 -1229 -138 -1229 187 -369 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 50 E= 1.7e-385 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.060000 0.000000 0.940000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.940000 0.000000 0.060000 0.020000 0.980000 0.000000 0.000000 0.020000 0.280000 0.000000 0.700000 0.960000 0.000000 0.020000 0.020000 0.080000 0.040000 0.860000 0.020000 0.040000 0.860000 0.000000 0.100000 0.020000 0.060000 0.000000 0.920000 0.920000 0.000000 0.060000 0.020000 0.000000 0.940000 0.000000 0.060000 0.020000 0.020000 0.000000 0.960000 0.060000 0.500000 0.020000 0.420000 0.460000 0.000000 0.440000 0.100000 0.040000 0.000000 0.960000 0.000000 0.120000 0.000000 0.860000 0.020000 0.980000 0.000000 0.020000 0.000000 0.080000 0.020000 0.900000 0.000000 0.020000 0.000000 0.960000 0.020000 0.040000 0.900000 0.000000 0.060000 0.000000 0.000000 0.020000 0.980000 0.120000 0.000000 0.860000 0.020000 1.000000 0.000000 0.000000 0.000000 0.040000 0.000000 0.960000 0.000000 0.100000 0.000000 0.880000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAGTCCTAGCTACTYRGGAGGCTGAGG MEME-3 regular expression -------------------------------------------------------------------------------- TAGTCC[TC]AGCTACT[CT][AG]GGAGGCTGAGG -------------------------------------------------------------------------------- Time 2797.50 secs. ******************************************************************************** ******************************************************************************** MOTIF CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 width = 31 sites = 50 llr = 1494 E-value = 3.9e-389 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 1::5:::::a:aaaa9932389999438422 pos.-specific C 996::9:a::a::::::::::::::::::45 probability G :::5::::::::::::::::::::::::621 matrix T 114:a:a:a::::::1178721111672122 bits 2.1 1.9 * ********* 1.6 ************ * * 1.4 * ************* **** Relative 1.2 ** ************* * ***** Entropy 1.0 ************************* ** (43.1 bits) 0.8 **************************** 0.6 ***************************** 0.4 ***************************** * 0.2 ******************************* 0.0 ------------------------------- Multilevel CCCATCTCTACAAAAAATTTAAAAATTAGCC consensus TG AAAT AATAAT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:218268930-218269030 - 61 6.84e-19 TGGTGAGAC CCCATCTCTACAAAAAATTTAAAAATTAGCC AGGCATTGAG chr2:20125443-20125543 + 7 6.84e-19 gcgacc cccatctctacaaaaaatttaaaaattagcc aggtgtagtg chr2:218634957-218635057 + 22 6.84e-19 tgtagagact cccgtctctacaaaaaatttaaaaattagcc tggcatggtg chr2:170343157-170343257 + 9 2.11e-18 aaagtgag cctgtctctacaaaaaatttaaaaattagcc aggcatggtg chr1:45789577-45789677 - 63 2.11e-18 GCGAGAT CCTGTCTCTACAAAAAATTTAAAAATTAGCC AGGCATGGTG chr1:179128688-179128788 - 60 2.11e-18 TAGTGAGACC CCTGTCTCTACAAAAAATTTAAAAATTAGCC AGGGGCAGTG chr2:159025927-159026027 - 64 2.11e-18 CAACAC CCTATCTCTACAAAAAATTTAAAAATTAGCC AGGAATTGTG chr1:153914651-153914751 + 14 4.96e-18 acagggagac cccatctctacaaaaaatttaaaaattaggc ttggtggtgt chr2:172900253-172900353 - 56 4.96e-18 CATGGCAAGA CCCATCTCTACAAAAAATTAAAAAATTAGCC AAGTGTGGTA chr1:23852142-23852242 + 7 2.25e-17 caagac cctgtctctacaaaaaatttaaaaattagct ggttgtagag chr2:24259935-24260035 - 55 8.12e-17 ACAGCAAGAC CTCATCTCTACAAAAAATTTAAAAATTAGCC GGGCATAGTG chr2:61089904-61090004 + 21 8.12e-17 atagccagac cccatctctacaaaaaaattaaaaattagct gagcatggca chr2:42540553-42540653 + 5 1.62e-16 agac cttgtctctacaaaaaatttaaaaattagcc aggcatggtg chr2:165430633-165430733 - 66 4.43e-16 AGAT CCTGTCTCTACAAAAATTTTAAAAATTAGCC AGCCATAGTG chr3:5261903-5262003 - 66 6.73e-16 AGAC ACCATCTCTACAAAAAATTTAAAAATTAGCT TGATATGGCA chr1:158185424-158185524 + 6 9.90e-16 gagac cctgtctctacaaaaaattaaaaaactagcc acccatggtg chr1:237371164-237371264 - 58 1.12e-15 TGGTGAGACT CCCATCTCTACAATAAATTTAAAAATTAGCC AGGCGTGGTA chr1:184421126-184421226 - 66 1.83e-15 GACC CCCATTTCTACAAAAAATTTAAAAATTAGCT GGGTATGGTG chr1:217611897-217611997 + 3 2.60e-15 ac cctgtctctacaaaaagattaaaaattagcc gggcatgatg chr2:152856942-152857042 - 69 4.07e-15 A TCTGTCTCTACAAAAAATTTAAAAATTAGGT GGGCATAGGG chr1:150835319-150835419 + 21 4.53e-15 acagacagaa cctgtctctacaaaaaatttaaaaattggtc aagtgtggtg chr2:32997228-32997328 + 10 5.06e-15 aaacaagat cctgtctctacaaaaaataaaaaaatttgca aggcatagta chr1:27648971-27649071 - 67 6.26e-15 GAC CCTGTCTGTACAAAAAAATTAAAAATTAGCC GCATATGGTT chr2:206302034-206302134 - 50 6.94e-15 ATAATGAGAT CCTGTTTCTACAAAAAATTTAAAAAATAAGC CAGGCATGGT chr1:13477555-13477655 + 21 1.16e-14 atagcaagac cctgtctctacaaaatttttaaaaattagcc aggtgtggtg chr3:9780856-9780956 + 15 1.28e-14 acatagtgag actgtctctacaaaaaatttaaaaaattagc tgggtgtggt chr2:15885473-15885573 + 30 1.71e-14 atagcaagac cctgtctctacaaaatataaaaaaattagct gggtgtggtt chr2:206249897-206249997 - 47 2.06e-14 AAATCGAGAC CCCGTCTCTACAAAAAAAAAAAAAAAAAGGA AATTAGCTAG chr3:22094909-22095009 - 69 2.26e-14 C CCCATCTCTACAAAAAAAAAAAAAAAAAGAA AGAATGAAAA chr2:39279673-39279773 + 1 2.98e-14 . cccatctctacaaaaaattaaaaaacaaaaa cagctaggaa chr3:27556605-27556705 + 7 5.99e-14 aagacc cccatctctataaaaaattttaaaaattagc agggcatgat chr1:244995375-244995475 - 61 8.35e-14 CAGAGAGAC CTCATCTCTACAAAAAAATTTAAAAATAGTG AGGCACAGTG chr1:43740504-43740604 + 7 9.82e-14 cgaggc cttgtctctacaaaaaaattaaaaaatatta tccaggcata chr1:45443896-45443996 + 10 1.06e-13 tagcgatac actatctctacaaaaaaatttaaaaattagc cgggtgtggt chr2:160676076-160676176 - 57 1.06e-13 ATAGGGAGAC CCCATCTCTACAAAAAAAAAAAAATTTAAAA ATTAACCAGG chr2:15360353-15360453 - 60 1.15e-13 ATAGTGAAAT CCTGTCTCTACAAAAAATAAAAATAAAAATT TCCTGGGTGT chr2:97779734-97779834 + 9 1.15e-13 agtgagac ttcatctctacaaaaaattttaaaataaaac tagctgggtg chr2:151276072-151276172 - 51 1.83e-13 AAAGTGAGAG CTCGTCTCTACAAAAAGTTAAAAAAATTAGC TAGGCGTGGT chr1:92116857-92116957 - 58 1.97e-13 AATGCGAGAA CCCATCTCTACAAAAAATTTTTTAAATTAGC TGAGTATGAT chr2:216625494-216625594 - 68 1.97e-13 AC CCCATCTCTACAAAAAATTAAAATTAAAAAA TTTTCCAGGG chr2:154046026-154046126 + 14 2.47e-13 atagtgagac cccatctctaccaaaaataaaaaaataaaaa taaaaaaaga chr3:15031396-15031496 - 65 5.35e-13 AGGAC ACCATCTCTACAAAAAATAAAAATAAAAATT AGATGGGCAT chr2:148677393-148677493 + 63 6.12e-13 atagtgagac tccatctctataaaaaattttaaaaattatc taggttt chr1:109581981-109582081 - 68 7.95e-13 AA CCCGTCTTTACAAAATATTTTAAAAATTAGC TAAGCATGGT chr2:197140332-197140432 - 57 9.05e-13 ATAGCAAGAC CCCATCTCTACAAAAAATTTTTAAAAATTAG CTGGGCATGG chr1:145834857-145834957 + 6 1.16e-12 agacc cccgtctctacaaaaaatttttttaaaaaat tagttgggtg chr2:50089504-50089604 + 12 1.78e-12 tagcgagacc cccatctctacaaaaaaattttaaaaattag ccaggcatgg chr1:78195063-78195163 - 64 3.00e-12 TGAGAC CCTATCTCTACAAAAAAAAAAAATTTAATTA TCTGGGCATG chr2:74399260-74399360 - 67 1.36e-11 GAC CCCGTATCTACAAAAATAAAAATAAAAAAAT TAGCCAGGTG chr1:8437976-8438076 - 68 1.43e-11 AC CCCGTCTCTACAAAAAAATATTTTTAAAATT AGCTGGGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:218268930-218269030 6.8e-19 60_[-4]_9 chr2:20125443-20125543 6.8e-19 6_[+4]_63 chr2:218634957-218635057 6.8e-19 21_[+4]_48 chr2:170343157-170343257 2.1e-18 8_[+4]_61 chr1:45789577-45789677 2.1e-18 62_[-4]_7 chr1:179128688-179128788 2.1e-18 59_[-4]_10 chr2:159025927-159026027 2.1e-18 63_[-4]_6 chr1:153914651-153914751 5e-18 13_[+4]_56 chr2:172900253-172900353 5e-18 55_[-4]_14 chr1:23852142-23852242 2.3e-17 6_[+4]_63 chr2:24259935-24260035 8.1e-17 54_[-4]_15 chr2:61089904-61090004 8.1e-17 20_[+4]_49 chr2:42540553-42540653 1.6e-16 4_[+4]_65 chr2:165430633-165430733 4.4e-16 65_[-4]_4 chr3:5261903-5262003 6.7e-16 65_[-4]_4 chr1:158185424-158185524 9.9e-16 5_[+4]_64 chr1:237371164-237371264 1.1e-15 57_[-4]_12 chr1:184421126-184421226 1.8e-15 65_[-4]_4 chr1:217611897-217611997 2.6e-15 2_[+4]_67 chr2:152856942-152857042 4.1e-15 68_[-4]_1 chr1:150835319-150835419 4.5e-15 20_[+4]_49 chr2:32997228-32997328 5.1e-15 9_[+4]_60 chr1:27648971-27649071 6.3e-15 66_[-4]_3 chr2:206302034-206302134 6.9e-15 49_[-4]_20 chr1:13477555-13477655 1.2e-14 20_[+4]_49 chr3:9780856-9780956 1.3e-14 14_[+4]_55 chr2:15885473-15885573 1.7e-14 29_[+4]_40 chr2:206249897-206249997 2.1e-14 46_[-4]_23 chr3:22094909-22095009 2.3e-14 68_[-4]_1 chr2:39279673-39279773 3e-14 [+4]_69 chr3:27556605-27556705 6e-14 6_[+4]_63 chr1:244995375-244995475 8.4e-14 60_[-4]_9 chr1:43740504-43740604 9.8e-14 6_[+4]_63 chr1:45443896-45443996 1.1e-13 9_[+4]_60 chr2:160676076-160676176 1.1e-13 56_[-4]_13 chr2:15360353-15360453 1.2e-13 59_[-4]_10 chr2:97779734-97779834 1.2e-13 8_[+4]_61 chr2:151276072-151276172 1.8e-13 50_[-4]_19 chr1:92116857-92116957 2e-13 57_[-4]_12 chr2:216625494-216625594 2e-13 67_[-4]_2 chr2:154046026-154046126 2.5e-13 13_[+4]_56 chr3:15031396-15031496 5.3e-13 64_[-4]_5 chr2:148677393-148677493 6.1e-13 62_[+4]_7 chr1:109581981-109582081 8e-13 67_[-4]_2 chr2:197140332-197140432 9e-13 56_[-4]_13 chr1:145834857-145834957 1.2e-12 5_[+4]_64 chr2:50089504-50089604 1.8e-12 11_[+4]_58 chr1:78195063-78195163 3e-12 63_[-4]_6 chr2:74399260-74399360 1.4e-11 66_[-4]_3 chr1:8437976-8438076 1.4e-11 67_[-4]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCYRTCTCTACAAAAAATTTAAAAAWTARCC width=31 seqs=50 chr1:218268930-218269030 ( 61) CCCATCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:20125443-20125543 ( 7) CCCATCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:218634957-218635057 ( 22) CCCGTCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:170343157-170343257 ( 9) CCTGTCTCTACAAAAAATTTAAAAATTAGCC 1 chr1:45789577-45789677 ( 63) CCTGTCTCTACAAAAAATTTAAAAATTAGCC 1 chr1:179128688-179128788 ( 60) CCTGTCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:159025927-159026027 ( 64) CCTATCTCTACAAAAAATTTAAAAATTAGCC 1 chr1:153914651-153914751 ( 14) CCCATCTCTACAAAAAATTTAAAAATTAGGC 1 chr2:172900253-172900353 ( 56) CCCATCTCTACAAAAAATTAAAAAATTAGCC 1 chr1:23852142-23852242 ( 7) CCTGTCTCTACAAAAAATTTAAAAATTAGCT 1 chr2:24259935-24260035 ( 55) CTCATCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:61089904-61090004 ( 21) CCCATCTCTACAAAAAAATTAAAAATTAGCT 1 chr2:42540553-42540653 ( 5) CTTGTCTCTACAAAAAATTTAAAAATTAGCC 1 chr2:165430633-165430733 ( 66) CCTGTCTCTACAAAAATTTTAAAAATTAGCC 1 chr3:5261903-5262003 ( 66) ACCATCTCTACAAAAAATTTAAAAATTAGCT 1 chr1:158185424-158185524 ( 6) CCTGTCTCTACAAAAAATTAAAAAACTAGCC 1 chr1:237371164-237371264 ( 58) CCCATCTCTACAATAAATTTAAAAATTAGCC 1 chr1:184421126-184421226 ( 66) CCCATTTCTACAAAAAATTTAAAAATTAGCT 1 chr1:217611897-217611997 ( 3) CCTGTCTCTACAAAAAGATTAAAAATTAGCC 1 chr2:152856942-152857042 ( 69) TCTGTCTCTACAAAAAATTTAAAAATTAGGT 1 chr1:150835319-150835419 ( 21) CCTGTCTCTACAAAAAATTTAAAAATTGGTC 1 chr2:32997228-32997328 ( 10) CCTGTCTCTACAAAAAATAAAAAAATTTGCA 1 chr1:27648971-27649071 ( 67) CCTGTCTGTACAAAAAAATTAAAAATTAGCC 1 chr2:206302034-206302134 ( 50) CCTGTTTCTACAAAAAATTTAAAAAATAAGC 1 chr1:13477555-13477655 ( 21) CCTGTCTCTACAAAATTTTTAAAAATTAGCC 1 chr3:9780856-9780956 ( 15) ACTGTCTCTACAAAAAATTTAAAAAATTAGC 1 chr2:15885473-15885573 ( 30) CCTGTCTCTACAAAATATAAAAAAATTAGCT 1 chr2:206249897-206249997 ( 47) CCCGTCTCTACAAAAAAAAAAAAAAAAAGGA 1 chr3:22094909-22095009 ( 69) CCCATCTCTACAAAAAAAAAAAAAAAAAGAA 1 chr2:39279673-39279773 ( 1) CCCATCTCTACAAAAAATTAAAAAACAAAAA 1 chr3:27556605-27556705 ( 7) CCCATCTCTATAAAAAATTTTAAAAATTAGC 1 chr1:244995375-244995475 ( 61) CTCATCTCTACAAAAAAATTTAAAAATAGTG 1 chr1:43740504-43740604 ( 7) CTTGTCTCTACAAAAAAATTAAAAAATATTA 1 chr1:45443896-45443996 ( 10) ACTATCTCTACAAAAAAATTTAAAAATTAGC 1 chr2:160676076-160676176 ( 57) CCCATCTCTACAAAAAAAAAAAAATTTAAAA 1 chr2:15360353-15360453 ( 60) CCTGTCTCTACAAAAAATAAAAATAAAAATT 1 chr2:97779734-97779834 ( 9) TTCATCTCTACAAAAAATTTTAAAATAAAAC 1 chr2:151276072-151276172 ( 51) CTCGTCTCTACAAAAAGTTAAAAAAATTAGC 1 chr1:92116857-92116957 ( 58) CCCATCTCTACAAAAAATTTTTTAAATTAGC 1 chr2:216625494-216625594 ( 68) CCCATCTCTACAAAAAATTAAAATTAAAAAA 1 chr2:154046026-154046126 ( 14) CCCATCTCTACCAAAAATAAAAAAATAAAAA 1 chr3:15031396-15031496 ( 65) ACCATCTCTACAAAAAATAAAAATAAAAATT 1 chr2:148677393-148677493 ( 63) TCCATCTCTATAAAAAATTTTAAAAATTATC 1 chr1:109581981-109582081 ( 68) CCCGTCTTTACAAAATATTTTAAAAATTAGC 1 chr2:197140332-197140432 ( 57) CCCATCTCTACAAAAAATTTTTAAAAATTAG 1 chr1:145834857-145834957 ( 6) CCCGTCTCTACAAAAAATTTTTTTAAAAAAT 1 chr2:50089504-50089604 ( 12) CCCATCTCTACAAAAAAATTTTAAAAATTAG 1 chr1:78195063-78195163 ( 64) CCTATCTCTACAAAAAAAAAAAATTTAATTA 1 chr2:74399260-74399360 ( 67) CCCGTATCTACAAAAATAAAAATAAAAAAAT 1 chr1:8437976-8438076 ( 68) CCCGTCTCTACAAAAAAATATTTTTAAAATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 40857 bayes= 10.8065 E= 3.9e-389 -170 184 -1229 -211 -1229 187 -1229 -111 -1229 127 -1229 69 95 -1229 106 -1229 -1229 -1229 -1229 195 -369 197 -1229 -270 -1229 -1229 -1229 195 -1229 200 -358 -369 -1229 -1229 -1229 195 195 -1229 -1229 -1229 -1229 200 -1229 -270 192 -358 -1229 -1229 195 -1229 -1229 -1229 192 -1229 -1229 -369 195 -1229 -1229 -1229 186 -1229 -1229 -211 179 -1229 -259 -211 0 -1229 -1229 151 -38 -1229 -1229 162 30 -1229 -1229 139 159 -1229 -1229 -24 179 -1229 -1229 -138 183 -1229 -1229 -170 176 -1229 -1229 -111 183 -1229 -1229 -170 62 -259 -1229 111 11 -1229 -1229 147 159 -1229 -358 -38 47 -1229 122 -170 -38 87 -27 -70 -53 117 -200 -24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 3.9e-389 0.080000 0.860000 0.000000 0.060000 0.000000 0.880000 0.000000 0.120000 0.000000 0.580000 0.000000 0.420000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.940000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.960000 0.020000 0.020000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.980000 0.020000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.940000 0.000000 0.000000 0.060000 0.900000 0.000000 0.040000 0.060000 0.260000 0.000000 0.000000 0.740000 0.200000 0.000000 0.000000 0.800000 0.320000 0.000000 0.000000 0.680000 0.780000 0.000000 0.000000 0.220000 0.900000 0.000000 0.000000 0.100000 0.920000 0.000000 0.000000 0.080000 0.880000 0.000000 0.000000 0.120000 0.920000 0.000000 0.000000 0.080000 0.400000 0.040000 0.000000 0.560000 0.280000 0.000000 0.000000 0.720000 0.780000 0.000000 0.020000 0.200000 0.360000 0.000000 0.560000 0.080000 0.200000 0.440000 0.200000 0.160000 0.180000 0.540000 0.060000 0.220000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCYRTCTCTACAAAAAATTTAAAAAWTARCC MEME-4 regular expression -------------------------------------------------------------------------------- CC[CT][AG]TCTCTACAAAAAA[TA][TA][TA][AT]AAAA[TA][TA][AT][GA][CAG][CT] -------------------------------------------------------------------------------- Time 3666.02 secs. ******************************************************************************** ******************************************************************************** MOTIF TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 width = 27 sites = 50 llr = 1338 E-value = 1.8e-330 ******************************************************************************** -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :4::::a1:1:55::::3aa::::::: pos.-specific C :::949:514:::5a:6:::a:a9::: probability G :1a::::444:45:::17:::::::aa matrix T a5:161::51a::5:a4::::a::a:: bits 2.1 * * 1.9 * * ** ***** *** 1.6 * * ** * ** ********* 1.4 * * ** * ** ********* Relative 1.2 * ** ** * ** ********* Entropy 1.0 * ** ** * ** ********** (38.6 bits) 0.8 * ****** ***************** 0.6 ********* ***************** 0.4 *************************** 0.2 *************************** 0.0 --------------------------- Multilevel TTGCTCACTGTAATCTCGAACTCCTGG consensus A C GGC GGC TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------------- chr2:74956771-74956871 + 37 9.80e-15 ggtgcaatca ttgctcactgtaaccttgaactcctgg gctcaagcaa chr2:128202542-128202642 - 54 9.80e-15 TCTCGCTATG TTGCCCAGGCTGGTCTCGAACTCCTGG GCTCAAGTGA chr1:46201229-46201329 - 58 9.80e-15 TCTCGCTATG TTGCCCAGGCTGGTCTCGAACTCCTGG CCTCAAGCAA chr1:31344154-31344254 + 27 2.15e-14 tcttgctgtg ttgcccaggctgatcttgaactcctgg tctcaagtga chr1:61696772-61696872 + 33 2.15e-14 tctcactatg ttgcccaggctagtcttgaactcctgg gataaagtga chr2:91978570-91978670 + 39 2.15e-14 tctcgctatg ttgcccaggctgatcttgaactcctgg cttcaagaga chr1:35352116-35352216 - 45 2.52e-14 TCTTGCTCTG TTGCCCAGTCTGGTCTTGAACTCCTGG ACTCAAGCGA chr2:37064279-37064379 + 22 2.87e-14 ggcatgttca tagctcactgtaacctcaaactcctgg gctcaagtga chr1:227363300-227363400 - 54 2.87e-14 GTGCAATCCA TAGCTCACTGTAACCTCAAACTCCTGG GCTCAAGCAA chr2:231646678-231646778 + 68 2.87e-14 tagctgatca tagctcactgtaacctcaaactcctgg gctcaa chr1:35635273-35635373 + 21 4.13e-14 tgtcactaca ttgctcaggctagtcttaaactcctgg tctcaagtga chr2:138967194-138967294 - 40 6.69e-14 GGTGATATCA TGGCTCACTCTAACCTCGAACTCCTGG GCTCAAGTGA chr1:76997718-76997818 - 63 1.04e-13 TCTCGCTATG TTGCTCAGGTTGGTCTTGAACTCCTGG CCTCAAGTGA chr2:27145840-27145940 + 26 1.04e-13 ggcgcaatca tagctcactgtaacctggaactcctgg gctcaagtga chr2:33813859-33813959 + 33 1.04e-13 ggcacagtca tagttcactgtaacctcgaactcctgg cctcaagtga chr1:182173673-182173773 - 54 1.16e-13 TCTTGCTATG TTGCCCAGGTTGATCTTGAACTCCTGG CCTCAAGTGA chr1:20624960-20625060 - 55 1.29e-13 TCTTGCCACA TTGCCCAGGATGATCTCAAACTCCTGG CCTCAAGAGA chr1:245205864-245205964 + 41 1.29e-13 tcttgttatg ttgcccagggtggtctggaactcctgg cctcaagcaa chr2:27686873-27686973 + 70 1.42e-13 tctccctatg ttgctcaagctggtctcaaactcctgg cctc chr1:45283607-45283707 + 23 1.71e-13 tctcactatg ttgcccaagctggtctcaaactcctgg cttcaagcga chr1:240862967-240863067 + 9 2.61e-13 gcatgata tagctcactgcaacctcgaactcctgg ccgcaaggaa chr1:19555745-19555845 + 32 2.61e-13 ggcatgatca cagctcactgtaacctcgaactcctgg gctcaagtga chr2:25936206-25936306 + 21 2.92e-13 tctcgctatg ttgtccaggctggtctcaaactcctgg cctcaagtga chr2:25971899-25971999 + 19 2.92e-13 tctggctttg ttgtccagtctggtctcaaactcctgg cctcaagtga chr1:87548020-87548120 + 23 3.62e-13 tcttgctata ttgcccaggctgatctcgaactcctag cctcaaacaa chr1:45283143-45283243 + 15 4.47e-13 gctgcgatca tagctcactgcaaccttgaactcctgg gctctagtga chr2:202241231-202241331 - 53 4.47e-13 AATGCAATCA TAGCTCACTGTAATCTTGAACTCTTGG CCTCAAGGTA chr1:31305605-31305705 + 22 4.47e-13 tgtcgctgtg ttgcccaggctggcctcgaacttctgg tctcaagcat chr1:70068716-70068816 + 11 4.99e-13 agtacaatca tagctcactgtacccttgaactcctgg gctcaatgat chr2:23937262-23937362 - 10 6.85e-13 TTTCACTGTG TTGCCCAGGCTGGTCTCGAACCCCTGG CCTCAAACT chr2:87917328-87917428 + 34 7.53e-13 ggtgtgatca taggtcactgtaatcttgaactcctgg gctcaagcca chr2:203070359-203070459 + 40 8.24e-13 ggtataatca tagcttactgtagccttaaactcctgg gctcaagtga chr1:45384437-45384537 + 23 8.24e-13 ggcacaatca tggctcactatagcctcaaactcctgg gctcaagcaa chr3:26172990-26173090 + 36 8.24e-13 ggcacatgca tagctcaatataacctcaaactcctgg gctcaagcca chr1:39013651-39013751 - 12 8.24e-13 GGTGAAATCA TAGTTCACCGTAACCTCGAACTCCTGG ACTCAAGCAA chr1:28483912-28484012 - 53 8.97e-13 TCTTACTATG TTACCCAGGCTGGTCTCAAACTCCTGG CCTCAAGCAA chr2:127751447-127751547 - 17 8.97e-13 GGCATGATCA TAGCTCACCATAACCTCAAACTCCTGG CCCTAAGCCA chr2:102627003-102627103 - 58 8.97e-13 CCTCACTATG TTGCCCAGGCTGGTCTCAAACTTCTGG CCTCAAGTGA chr1:233814960-233815060 + 29 9.73e-13 caatcataca tagctcactgtaaccttgaactcatgg cctcaagtga chr2:227674192-227674292 - 56 1.41e-12 TCTCACTGTG TTGCGCAGGTTGGTCTCGAACTCCTGG CCGCAAACAG chr1:176020968-176021068 + 35 1.63e-12 ggcacaatca cagctcactataaccttgaactcctgg actcaaaggc chr1:207900996-207901096 + 52 1.63e-12 ggtgagatca tagctcactgtaaccttaagctcctgg cctcaagtga chr1:225576071-225576171 - 60 1.90e-12 GACATGATCA TGACTCACTGTGGCCTCGAACTCCTGG CTCAAGTGAT chr1:28275771-28275871 - 46 2.21e-12 TCTCACTATG TTGCCCAAGCTCGTCTTGAACTCCTGG TCTCAAGCAA chr2:196574975-196575075 - 14 2.39e-12 GGTATGATCA TAGCTCACCGTAAGCTTGAACTCCTGG GCTCAAGCAG chr2:143036058-143036152 + 39 3.00e-12 tctggctatg ttgtccacgttaatctggaactcctgg cctcaagcga chr2:100145283-100145383 - 55 3.77e-12 TCTCACTACG TTGCCTAGACTGGTCTCGAACTCCTGG CCTCGAGCAA chr2:30169789-30169889 + 19 5.84e-12 tctccctatg ttgactaggctggtctcgaactcctgg gctcaagtga chr2:132834197-132834297 + 50 7.31e-12 ggtgtaatca tagctcactgtagccttgaactcttag gctcaagcaa chr1:42762139-42762239 - 24 1.94e-11 GGCTTGATCA TAGCTCACTGTAACCTCAAATTCCCGG ACTCAAGAGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:74956771-74956871 9.8e-15 36_[+5]_37 chr2:128202542-128202642 9.8e-15 53_[-5]_20 chr1:46201229-46201329 9.8e-15 57_[-5]_16 chr1:31344154-31344254 2.2e-14 26_[+5]_47 chr1:61696772-61696872 2.2e-14 32_[+5]_41 chr2:91978570-91978670 2.2e-14 38_[+5]_35 chr1:35352116-35352216 2.5e-14 44_[-5]_29 chr2:37064279-37064379 2.9e-14 21_[+5]_52 chr1:227363300-227363400 2.9e-14 53_[-5]_20 chr2:231646678-231646778 2.9e-14 67_[+5]_6 chr1:35635273-35635373 4.1e-14 20_[+5]_53 chr2:138967194-138967294 6.7e-14 39_[-5]_34 chr1:76997718-76997818 1e-13 62_[-5]_11 chr2:27145840-27145940 1e-13 25_[+5]_48 chr2:33813859-33813959 1e-13 32_[+5]_41 chr1:182173673-182173773 1.2e-13 53_[-5]_20 chr1:20624960-20625060 1.3e-13 54_[-5]_19 chr1:245205864-245205964 1.3e-13 40_[+5]_33 chr2:27686873-27686973 1.4e-13 69_[+5]_4 chr1:45283607-45283707 1.7e-13 22_[+5]_51 chr1:240862967-240863067 2.6e-13 8_[+5]_65 chr1:19555745-19555845 2.6e-13 31_[+5]_42 chr2:25936206-25936306 2.9e-13 20_[+5]_53 chr2:25971899-25971999 2.9e-13 18_[+5]_55 chr1:87548020-87548120 3.6e-13 22_[+5]_51 chr1:45283143-45283243 4.5e-13 14_[+5]_59 chr2:202241231-202241331 4.5e-13 52_[-5]_21 chr1:31305605-31305705 4.5e-13 21_[+5]_52 chr1:70068716-70068816 5e-13 10_[+5]_63 chr2:23937262-23937362 6.8e-13 9_[-5]_64 chr2:87917328-87917428 7.5e-13 33_[+5]_40 chr2:203070359-203070459 8.2e-13 39_[+5]_34 chr1:45384437-45384537 8.2e-13 22_[+5]_51 chr3:26172990-26173090 8.2e-13 35_[+5]_38 chr1:39013651-39013751 8.2e-13 11_[-5]_62 chr1:28483912-28484012 9e-13 52_[-5]_21 chr2:127751447-127751547 9e-13 16_[-5]_57 chr2:102627003-102627103 9e-13 57_[-5]_16 chr1:233814960-233815060 9.7e-13 28_[+5]_45 chr2:227674192-227674292 1.4e-12 55_[-5]_18 chr1:176020968-176021068 1.6e-12 34_[+5]_39 chr1:207900996-207901096 1.6e-12 51_[+5]_22 chr1:225576071-225576171 1.9e-12 59_[-5]_14 chr1:28275771-28275871 2.2e-12 45_[-5]_28 chr2:196574975-196575075 2.4e-12 13_[-5]_60 chr2:143036058-143036152 3e-12 38_[+5]_29 chr2:100145283-100145383 3.8e-12 54_[-5]_19 chr2:30169789-30169889 5.8e-12 18_[+5]_55 chr2:132834197-132834297 7.3e-12 49_[+5]_24 chr1:42762139-42762239 1.9e-11 23_[-5]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TWGCYCASKSTRRYCTYRAACTCCTGG width=27 seqs=50 chr2:74956771-74956871 ( 37) TTGCTCACTGTAACCTTGAACTCCTGG 1 chr2:128202542-128202642 ( 54) TTGCCCAGGCTGGTCTCGAACTCCTGG 1 chr1:46201229-46201329 ( 58) TTGCCCAGGCTGGTCTCGAACTCCTGG 1 chr1:31344154-31344254 ( 27) TTGCCCAGGCTGATCTTGAACTCCTGG 1 chr1:61696772-61696872 ( 33) TTGCCCAGGCTAGTCTTGAACTCCTGG 1 chr2:91978570-91978670 ( 39) TTGCCCAGGCTGATCTTGAACTCCTGG 1 chr1:35352116-35352216 ( 45) TTGCCCAGTCTGGTCTTGAACTCCTGG 1 chr2:37064279-37064379 ( 22) TAGCTCACTGTAACCTCAAACTCCTGG 1 chr1:227363300-227363400 ( 54) TAGCTCACTGTAACCTCAAACTCCTGG 1 chr2:231646678-231646778 ( 68) TAGCTCACTGTAACCTCAAACTCCTGG 1 chr1:35635273-35635373 ( 21) TTGCTCAGGCTAGTCTTAAACTCCTGG 1 chr2:138967194-138967294 ( 40) TGGCTCACTCTAACCTCGAACTCCTGG 1 chr1:76997718-76997818 ( 63) TTGCTCAGGTTGGTCTTGAACTCCTGG 1 chr2:27145840-27145940 ( 26) TAGCTCACTGTAACCTGGAACTCCTGG 1 chr2:33813859-33813959 ( 33) TAGTTCACTGTAACCTCGAACTCCTGG 1 chr1:182173673-182173773 ( 54) TTGCCCAGGTTGATCTTGAACTCCTGG 1 chr1:20624960-20625060 ( 55) TTGCCCAGGATGATCTCAAACTCCTGG 1 chr1:245205864-245205964 ( 41) TTGCCCAGGGTGGTCTGGAACTCCTGG 1 chr2:27686873-27686973 ( 70) TTGCTCAAGCTGGTCTCAAACTCCTGG 1 chr1:45283607-45283707 ( 23) TTGCCCAAGCTGGTCTCAAACTCCTGG 1 chr1:240862967-240863067 ( 9) TAGCTCACTGCAACCTCGAACTCCTGG 1 chr1:19555745-19555845 ( 32) CAGCTCACTGTAACCTCGAACTCCTGG 1 chr2:25936206-25936306 ( 21) TTGTCCAGGCTGGTCTCAAACTCCTGG 1 chr2:25971899-25971999 ( 19) TTGTCCAGTCTGGTCTCAAACTCCTGG 1 chr1:87548020-87548120 ( 23) TTGCCCAGGCTGATCTCGAACTCCTAG 1 chr1:45283143-45283243 ( 15) TAGCTCACTGCAACCTTGAACTCCTGG 1 chr2:202241231-202241331 ( 53) TAGCTCACTGTAATCTTGAACTCTTGG 1 chr1:31305605-31305705 ( 22) TTGCCCAGGCTGGCCTCGAACTTCTGG 1 chr1:70068716-70068816 ( 11) TAGCTCACTGTACCCTTGAACTCCTGG 1 chr2:23937262-23937362 ( 10) TTGCCCAGGCTGGTCTCGAACCCCTGG 1 chr2:87917328-87917428 ( 34) TAGGTCACTGTAATCTTGAACTCCTGG 1 chr2:203070359-203070459 ( 40) TAGCTTACTGTAGCCTTAAACTCCTGG 1 chr1:45384437-45384537 ( 23) TGGCTCACTATAGCCTCAAACTCCTGG 1 chr3:26172990-26173090 ( 36) TAGCTCAATATAACCTCAAACTCCTGG 1 chr1:39013651-39013751 ( 12) TAGTTCACCGTAACCTCGAACTCCTGG 1 chr1:28483912-28484012 ( 53) TTACCCAGGCTGGTCTCAAACTCCTGG 1 chr2:127751447-127751547 ( 17) TAGCTCACCATAACCTCAAACTCCTGG 1 chr2:102627003-102627103 ( 58) TTGCCCAGGCTGGTCTCAAACTTCTGG 1 chr1:233814960-233815060 ( 29) TAGCTCACTGTAACCTTGAACTCATGG 1 chr2:227674192-227674292 ( 56) TTGCGCAGGTTGGTCTCGAACTCCTGG 1 chr1:176020968-176021068 ( 35) CAGCTCACTATAACCTTGAACTCCTGG 1 chr1:207900996-207901096 ( 52) TAGCTCACTGTAACCTTAAGCTCCTGG 1 chr1:225576071-225576171 ( 60) TGACTCACTGTGGCCTCGAACTCCTGG 1 chr1:28275771-28275871 ( 46) TTGCCCAAGCTCGTCTTGAACTCCTGG 1 chr2:196574975-196575075 ( 14) TAGCTCACCGTAAGCTTGAACTCCTGG 1 chr2:143036058-143036152 ( 39) TTGTCCACGTTAATCTGGAACTCCTGG 1 chr2:100145283-100145383 ( 55) TTGCCTAGACTGGTCTCGAACTCCTGG 1 chr2:30169789-30169889 ( 19) TTGACTAGGCTGGTCTCGAACTCCTGG 1 chr2:132834197-132834297 ( 50) TAGCTCACTGTAGCCTTGAACTCTTAG 1 chr1:42762139-42762239 ( 24) TAGCTCACTGTAACCTCAAATTCCCGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 27 n= 43257 bayes= 9.75512 E= 1.8e-330 -1229 -259 -1229 189 69 -1229 -200 100 -270 -1229 200 -1229 -369 184 -358 -138 -1229 80 -358 111 -1229 197 -1229 -211 195 -1229 -1229 -1229 -170 106 80 -1229 -369 -200 87 89 -138 73 80 -170 -1229 -259 -1229 189 106 -358 87 -1229 100 -358 94 -1229 -1229 94 -358 100 -1229 206 -1229 -1229 -1229 -1229 -1229 195 -1229 122 -200 55 39 -1229 146 -1229 195 -1229 -1229 -1229 192 -1229 -358 -1229 -1229 203 -1229 -369 -1229 -358 -1229 192 -1229 200 -1229 -270 -369 197 -1229 -270 -1229 -358 -1229 192 -270 -1229 200 -1229 -1229 -1229 206 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 27 nsites= 50 E= 1.8e-330 0.000000 0.040000 0.000000 0.960000 0.420000 0.000000 0.060000 0.520000 0.040000 0.000000 0.960000 0.000000 0.020000 0.860000 0.020000 0.100000 0.000000 0.420000 0.020000 0.560000 0.000000 0.940000 0.000000 0.060000 1.000000 0.000000 0.000000 0.000000 0.080000 0.500000 0.420000 0.000000 0.020000 0.060000 0.440000 0.480000 0.100000 0.400000 0.420000 0.080000 0.000000 0.040000 0.000000 0.960000 0.540000 0.020000 0.440000 0.000000 0.520000 0.020000 0.460000 0.000000 0.000000 0.460000 0.020000 0.520000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.560000 0.060000 0.380000 0.340000 0.000000 0.660000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.960000 0.000000 0.040000 0.020000 0.940000 0.000000 0.040000 0.000000 0.020000 0.000000 0.980000 0.040000 0.000000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TWGCYCASKSTRRYCTYRAACTCCTGG MEME-5 regular expression -------------------------------------------------------------------------------- T[TA]GC[TC]CA[CG][TG][GC]T[AG][AG][TC]CT[CT][GA]AACTCCTGG -------------------------------------------------------------------------------- Time 4500.24 secs. ******************************************************************************** ******************************************************************************** MOTIF TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 width = 31 sites = 50 llr = 1552 E-value = 9.5e-415 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 Description -------------------------------------------------------------------------------- Simplified A ::::91:19:::311a11::1921:7::a11 pos.-specific C :993::9:19:4::::::81::::7:::::: probability G ::::19:::::1699:88::9:89:3aa:99 matrix T a117::19:1a5::::::19::::3:::::: bits 2.1 * 1.9 * * *** 1.6 ** * ** * ** **** 1.4 *** ** **** *** *** * ***** Relative 1.2 *** ******* ************ ***** Entropy 1.0 *********** ******************* (44.8 bits) 0.8 *********** ******************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TCCTAGCTACTTGGGAGGCTGAGGCAGGAGG consensus C CA TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:36073760-36073860 + 4 4.07e-18 taa tcctagctacttgggaagctgaggcaggagg cctgcttgag chr1:88774707-88774807 - 8 1.41e-17 GTTCCCGTAC TCCTAGCTACTCAGGAGGTTGAGGCAGGAGG ATTGCTT chr1:45813337-45813437 - 70 1.43e-16 . TCCTAGTTACTTGGGAGGCTGAGGCAGGAGA ATTGCTTGAA chr2:196540426-196540526 - 19 1.43e-16 ACTCTTGTAG TCTCAGCTACTTGGGAGGCTGAAGCAGGAGG ATACTTGAGC chr1:171349344-171349444 + 56 1.64e-16 ctgcctgtgg tcccaggtactcaggaggctgaggcaggagg atcccttgag chr1:239704919-239705019 + 63 2.82e-16 gcacctgcag tctcagctacttgggaggctgagacaggagg atcactc chr1:174336121-174336221 - 9 3.60e-16 ATGCCTGTGG TCCTAACTACTCAGGAGGCTGAAGCAGGAGG TTCAATGA chr2:124645298-124645398 + 61 4.08e-16 atacctgtgg ttctagctacttgggagtctgaggcaggagg atcgcttga chr1:18972189-18972289 + 63 4.62e-16 acatctgtgg tcccagctacctgggaggctgaggtgggagg atcactt chr2:152484530-152484630 + 39 4.62e-16 tggtgggtag tcccagctactcaggaggctgagatgggagg atcacttgaa chr1:64666606-64666706 + 68 5.16e-16 acacttgtat tcctagtaactcaggaggctgaggcaggagg ct chr1:67525165-67525265 - 49 5.74e-16 GTGCCTGGGA TCCTAGCTACTCAGGAAGCTGGGGCAGGAGG ATCGCTTAAG chr2:172952070-172952170 - 41 5.74e-16 ATGCCTGCAG TCCTAGCTACTTGAGAGACTGAAGCAGGAGG ATCACTTGAG chr2:235472091-235472191 + 65 5.74e-16 acgcctgtat tcctagccactcgggaggttgaggcaggagg atcgc chr1:161236984-161237084 - 53 6.42e-16 GTACCTATAG TTCCAGCTACTCAGGAGGTTGAGGCAGGAGG ATCCCTTGAG chr1:21115705-21115805 - 10 6.42e-16 ACCTGTATAT TCCTAGATACTTGGGAGACTGAGGCAGGAGG ACCGTTTGA chr1:224635719-224635819 - 9 7.94e-16 ACACCTGTAA TCCCAGCTACTCAGAAAGCTGAGGCAGGAGG AATGCTTG chr1:248706823-248706923 + 69 7.94e-16 gtgcctgaaa tcctagctacttgggagactgaaacaggagg a chr1:78195063-78195163 - 6 9.76e-16 ACACATATAG TCCTTGCTACTTGGGAGTCTGAGGCAGGAGG ATAGC chr1:219786484-219786584 + 68 1.09e-15 ccacatgtag tcctagctatttgggaggctcaggcaggagg at chr1:233264956-233265056 + 68 1.68e-15 gcacctatag tccttgctactggggaggctgaggtgggagg ac chr1:42517087-42517187 - 6 1.68e-15 TTGTCTTTGG TCCTAGCTACTCAGGAGGCTATGGCAGGAGG ATTCC chr1:113017941-113018041 + 46 2.75e-15 atgcctgtag tcttagctacttgggaggctgtggcaggaga atcacttgag chr1:38241755-38241855 - 4 3.05e-15 GCATCTATAG TCCTAGGTACTCAGGAAGCTGAGGTGGGAGG ATC chr2:172809530-172809630 - 14 3.05e-15 TTGCCTATGG TCCCAGCTACTCAAGAGGGTGAGGCAGGAGG ATCCCTTAAT chr1:25226702-25226802 + 64 3.37e-15 atgtctgtaa tcctagctactggggaggctgatgtgggagg atccct chr1:202546325-202546425 + 63 3.37e-15 gtgcctatac tcttagctacttgggaggctgaagtgggaga atagctt chr3:5261903-5262003 - 11 3.37e-15 GTGCCTATAT TCCTAGCTACTTGGGAGCCTGAGGTGGGAGA ATCACTTGAG chr1:84839391-84839491 + 57 3.37e-15 acatctgtag tcctagctacttgagaagttgaggtgggagg atcacttgag chr1:27648971-27649071 - 12 4.12e-15 ACAGCTGTAG TCTTAGCTACTCAGGAGACTGAGGCAGGAAG ATCATCTGAA chr2:20125443-20125543 + 62 4.54e-15 atacctgtgg tcctagctactctgaaggctgaggtgggagg atcacttg chr2:18299240-18299340 - 5 5.00e-15 GCACCTGTAC TCCTGGCTACTTGGGAAGCTGAGGCAGAAGG ACCA chr2:39279673-39279773 + 61 5.00e-15 gtgcctccag tcctagctactcgggtggctgaggcaggggg attgcataa chr1:235024421-235024521 + 67 6.01e-15 acgcctgtag tcctagtaactagggaggctgaggcaggagg acc chr1:51696882-51696982 + 55 8.86e-15 gtgcctgtgg tcctaactacttgggagattgaagcaggagg atcgcctgag chr1:153663335-153663435 - 11 9.76e-15 GAACTTATAG TCCTAGCTTCTCAGGAGGCTGAGTCAGGAGG GTTGCTTGAG chr2:135083460-135083560 - 8 1.07e-14 ATGCCTATAG TTCTACCTACTTGGAAGGCTGAGGCAGGAGG ATCACTT chr1:223831103-223831203 + 67 1.53e-14 ctgtagtccg tcctagctactgaagaggccgaggtgggagg atc chr1:232842394-232842494 - 11 1.53e-14 ATCCCTGAAG TCTTAGCTACTTGCGAGGCTGAAGTGGGAGG ATTGCTTGAT chr2:27709407-27709507 - 18 1.68e-14 GCACCTACAG TTCCAGCTACTCGGCAGGCTGAGGCAGGAGA ATTGCTTGAT chr1:218268930-218269030 - 6 1.85e-14 ATGCCTGTAT TCCTGGCTACTCGAGAGGCTGAAGCAGGAAG ATTGC chr2:148439737-148439837 - 8 1.85e-14 ATGCCTGTAG TCCCAGCTACCTGGGAGACTGAGGCAGAAGG AATGCTT chr1:116196457-116196557 + 42 1.85e-14 gtgcctgtgg tcctagttactcaggaggctgagatgggaga atggcatgag chr1:185218312-185218412 - 5 3.42e-14 ATGCCTGTGG TTCCAGCTATTCAGGAGGCTGAGGCTGGAGG ATCA chr1:19043716-19043816 + 65 3.73e-14 atgcctgtag tcccggctactcaggaagctgagatgggagg atcac chr3:4676059-4676159 + 63 5.27e-14 atgcctatag tcctagctacttgagacgttgaggcaggaag attgttt chr2:164995591-164995691 + 65 6.24e-14 gcacctgtag tcccaactccttgggaggctaaggtgggagg atcat chr2:227674192-227674292 + 14 2.66e-13 atacctgtaa tcccagcactttggaaggctgaggtgggagg actgtttgcg chr2:202241231-202241331 + 11 7.61e-13 atgcctataa tcccagcactttgggaggccaaggcaggagg ataccttgag chr2:238709723-238709823 - 70 1.92e-12 . TCGTAGCTACTTGGGAGGTCGGGGCAGGACG ATCACTTGAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:36073760-36073860 4.1e-18 3_[+6]_66 chr1:88774707-88774807 1.4e-17 7_[-6]_62 chr1:45813337-45813437 1.4e-16 69_[-6] chr2:196540426-196540526 1.4e-16 18_[-6]_51 chr1:171349344-171349444 1.6e-16 55_[+6]_14 chr1:239704919-239705019 2.8e-16 62_[+6]_7 chr1:174336121-174336221 3.6e-16 8_[-6]_61 chr2:124645298-124645398 4.1e-16 60_[+6]_9 chr1:18972189-18972289 4.6e-16 62_[+6]_7 chr2:152484530-152484630 4.6e-16 38_[+6]_31 chr1:64666606-64666706 5.2e-16 67_[+6]_2 chr1:67525165-67525265 5.7e-16 48_[-6]_21 chr2:172952070-172952170 5.7e-16 40_[-6]_29 chr2:235472091-235472191 5.7e-16 64_[+6]_5 chr1:161236984-161237084 6.4e-16 52_[-6]_17 chr1:21115705-21115805 6.4e-16 9_[-6]_60 chr1:224635719-224635819 7.9e-16 8_[-6]_61 chr1:248706823-248706923 7.9e-16 68_[+6]_1 chr1:78195063-78195163 9.8e-16 5_[-6]_64 chr1:219786484-219786584 1.1e-15 67_[+6]_2 chr1:233264956-233265056 1.7e-15 67_[+6]_2 chr1:42517087-42517187 1.7e-15 5_[-6]_64 chr1:113017941-113018041 2.8e-15 45_[+6]_24 chr1:38241755-38241855 3e-15 3_[-6]_66 chr2:172809530-172809630 3e-15 13_[-6]_56 chr1:25226702-25226802 3.4e-15 63_[+6]_6 chr1:202546325-202546425 3.4e-15 62_[+6]_7 chr3:5261903-5262003 3.4e-15 10_[-6]_59 chr1:84839391-84839491 3.4e-15 56_[+6]_13 chr1:27648971-27649071 4.1e-15 11_[-6]_58 chr2:20125443-20125543 4.5e-15 61_[+6]_8 chr2:18299240-18299340 5e-15 4_[-6]_65 chr2:39279673-39279773 5e-15 60_[+6]_9 chr1:235024421-235024521 6e-15 66_[+6]_3 chr1:51696882-51696982 8.9e-15 54_[+6]_15 chr1:153663335-153663435 9.8e-15 10_[-6]_59 chr2:135083460-135083560 1.1e-14 7_[-6]_62 chr1:223831103-223831203 1.5e-14 66_[+6]_3 chr1:232842394-232842494 1.5e-14 10_[-6]_59 chr2:27709407-27709507 1.7e-14 17_[-6]_52 chr1:218268930-218269030 1.8e-14 5_[-6]_64 chr2:148439737-148439837 1.8e-14 7_[-6]_62 chr1:116196457-116196557 1.8e-14 41_[+6]_28 chr1:185218312-185218412 3.4e-14 4_[-6]_65 chr1:19043716-19043816 3.7e-14 64_[+6]_5 chr3:4676059-4676159 5.3e-14 62_[+6]_7 chr2:164995591-164995691 6.2e-14 64_[+6]_5 chr2:227674192-227674292 2.7e-13 13_[+6]_56 chr2:202241231-202241331 7.6e-13 10_[+6]_59 chr2:238709723-238709823 1.9e-12 69_[-6] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG width=31 seqs=50 chr1:36073760-36073860 ( 4) TCCTAGCTACTTGGGAAGCTGAGGCAGGAGG 1 chr1:88774707-88774807 ( 8) TCCTAGCTACTCAGGAGGTTGAGGCAGGAGG 1 chr1:45813337-45813437 ( 70) TCCTAGTTACTTGGGAGGCTGAGGCAGGAGA 1 chr2:196540426-196540526 ( 19) TCTCAGCTACTTGGGAGGCTGAAGCAGGAGG 1 chr1:171349344-171349444 ( 56) TCCCAGGTACTCAGGAGGCTGAGGCAGGAGG 1 chr1:239704919-239705019 ( 63) TCTCAGCTACTTGGGAGGCTGAGACAGGAGG 1 chr1:174336121-174336221 ( 9) TCCTAACTACTCAGGAGGCTGAAGCAGGAGG 1 chr2:124645298-124645398 ( 61) TTCTAGCTACTTGGGAGTCTGAGGCAGGAGG 1 chr1:18972189-18972289 ( 63) TCCCAGCTACCTGGGAGGCTGAGGTGGGAGG 1 chr2:152484530-152484630 ( 39) TCCCAGCTACTCAGGAGGCTGAGATGGGAGG 1 chr1:64666606-64666706 ( 68) TCCTAGTAACTCAGGAGGCTGAGGCAGGAGG 1 chr1:67525165-67525265 ( 49) TCCTAGCTACTCAGGAAGCTGGGGCAGGAGG 1 chr2:172952070-172952170 ( 41) TCCTAGCTACTTGAGAGACTGAAGCAGGAGG 1 chr2:235472091-235472191 ( 65) TCCTAGCCACTCGGGAGGTTGAGGCAGGAGG 1 chr1:161236984-161237084 ( 53) TTCCAGCTACTCAGGAGGTTGAGGCAGGAGG 1 chr1:21115705-21115805 ( 10) TCCTAGATACTTGGGAGACTGAGGCAGGAGG 1 chr1:224635719-224635819 ( 9) TCCCAGCTACTCAGAAAGCTGAGGCAGGAGG 1 chr1:248706823-248706923 ( 69) TCCTAGCTACTTGGGAGACTGAAACAGGAGG 1 chr1:78195063-78195163 ( 6) TCCTTGCTACTTGGGAGTCTGAGGCAGGAGG 1 chr1:219786484-219786584 ( 68) TCCTAGCTATTTGGGAGGCTCAGGCAGGAGG 1 chr1:233264956-233265056 ( 68) TCCTTGCTACTGGGGAGGCTGAGGTGGGAGG 1 chr1:42517087-42517187 ( 6) TCCTAGCTACTCAGGAGGCTATGGCAGGAGG 1 chr1:113017941-113018041 ( 46) TCTTAGCTACTTGGGAGGCTGTGGCAGGAGA 1 chr1:38241755-38241855 ( 4) TCCTAGGTACTCAGGAAGCTGAGGTGGGAGG 1 chr2:172809530-172809630 ( 14) TCCCAGCTACTCAAGAGGGTGAGGCAGGAGG 1 chr1:25226702-25226802 ( 64) TCCTAGCTACTGGGGAGGCTGATGTGGGAGG 1 chr1:202546325-202546425 ( 63) TCTTAGCTACTTGGGAGGCTGAAGTGGGAGA 1 chr3:5261903-5262003 ( 11) TCCTAGCTACTTGGGAGCCTGAGGTGGGAGA 1 chr1:84839391-84839491 ( 57) TCCTAGCTACTTGAGAAGTTGAGGTGGGAGG 1 chr1:27648971-27649071 ( 12) TCTTAGCTACTCAGGAGACTGAGGCAGGAAG 1 chr2:20125443-20125543 ( 62) TCCTAGCTACTCTGAAGGCTGAGGTGGGAGG 1 chr2:18299240-18299340 ( 5) TCCTGGCTACTTGGGAAGCTGAGGCAGAAGG 1 chr2:39279673-39279773 ( 61) TCCTAGCTACTCGGGTGGCTGAGGCAGGGGG 1 chr1:235024421-235024521 ( 67) TCCTAGTAACTAGGGAGGCTGAGGCAGGAGG 1 chr1:51696882-51696982 ( 55) TCCTAACTACTTGGGAGATTGAAGCAGGAGG 1 chr1:153663335-153663435 ( 11) TCCTAGCTTCTCAGGAGGCTGAGTCAGGAGG 1 chr2:135083460-135083560 ( 8) TTCTACCTACTTGGAAGGCTGAGGCAGGAGG 1 chr1:223831103-223831203 ( 67) TCCTAGCTACTGAAGAGGCCGAGGTGGGAGG 1 chr1:232842394-232842494 ( 11) TCTTAGCTACTTGCGAGGCTGAAGTGGGAGG 1 chr2:27709407-27709507 ( 18) TTCCAGCTACTCGGCAGGCTGAGGCAGGAGA 1 chr1:218268930-218269030 ( 6) TCCTGGCTACTCGAGAGGCTGAAGCAGGAAG 1 chr2:148439737-148439837 ( 8) TCCCAGCTACCTGGGAGACTGAGGCAGAAGG 1 chr1:116196457-116196557 ( 42) TCCTAGTTACTCAGGAGGCTGAGATGGGAGA 1 chr1:185218312-185218412 ( 5) TTCCAGCTATTCAGGAGGCTGAGGCTGGAGG 1 chr1:19043716-19043816 ( 65) TCCCGGCTACTCAGGAAGCTGAGATGGGAGG 1 chr3:4676059-4676159 ( 63) TCCTAGCTACTTGAGACGTTGAGGCAGGAAG 1 chr2:164995591-164995691 ( 65) TCCCAACTCCTTGGGAGGCTAAGGTGGGAGG 1 chr2:227674192-227674292 ( 14) TCCCAGCACTTTGGAAGGCTGAGGTGGGAGG 1 chr2:202241231-202241331 ( 11) TCCCAGCACTTTGGGAGGCCAAGGCAGGAGG 1 chr2:238709723-238709823 ( 70) TCGTAGCTACTTGGGAGGTCGGGGCAGGACG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 40857 bayes= 11.7818 E= 9.5e-415 -1229 -1229 -1229 195 -1229 190 -1229 -138 -1229 184 -358 -111 -1229 32 -1229 143 179 -1229 -200 -270 -211 -358 194 -1229 -369 184 -259 -170 -170 -358 -1229 179 183 -200 -1229 -369 -1229 194 -1229 -170 -1229 -259 -1229 189 -369 80 -200 95 39 -1229 141 -369 -111 -358 184 -1229 -170 -358 190 -1229 192 -1229 -1229 -369 -89 -358 180 -1229 -111 -358 177 -270 -1229 180 -358 -89 -1229 -200 -1229 186 -211 -358 194 -1229 183 -1229 -259 -270 -70 -1229 177 -369 -138 -1229 187 -369 -1229 154 -1229 21 139 -1229 32 -369 -1229 -1229 206 -1229 -270 -1229 200 -1229 192 -1229 -358 -1229 -211 -358 194 -1229 -111 -1229 187 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 9.5e-415 0.000000 0.000000 0.000000 1.000000 0.000000 0.900000 0.000000 0.100000 0.000000 0.860000 0.020000 0.120000 0.000000 0.300000 0.000000 0.700000 0.900000 0.000000 0.060000 0.040000 0.060000 0.020000 0.920000 0.000000 0.020000 0.860000 0.040000 0.080000 0.080000 0.020000 0.000000 0.900000 0.920000 0.060000 0.000000 0.020000 0.000000 0.920000 0.000000 0.080000 0.000000 0.040000 0.000000 0.960000 0.020000 0.420000 0.060000 0.500000 0.340000 0.000000 0.640000 0.020000 0.120000 0.020000 0.860000 0.000000 0.080000 0.020000 0.900000 0.000000 0.980000 0.000000 0.000000 0.020000 0.140000 0.020000 0.840000 0.000000 0.120000 0.020000 0.820000 0.040000 0.000000 0.840000 0.020000 0.140000 0.000000 0.060000 0.000000 0.940000 0.060000 0.020000 0.920000 0.000000 0.920000 0.000000 0.040000 0.040000 0.160000 0.000000 0.820000 0.020000 0.100000 0.000000 0.880000 0.020000 0.000000 0.700000 0.000000 0.300000 0.680000 0.000000 0.300000 0.020000 0.000000 0.000000 1.000000 0.000000 0.040000 0.000000 0.960000 0.000000 0.980000 0.000000 0.020000 0.000000 0.060000 0.020000 0.920000 0.000000 0.120000 0.000000 0.880000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCCTAGCTACTYRGGAGGCTGAGGCAGGAGG MEME-6 regular expression -------------------------------------------------------------------------------- TCC[TC]AGCTACT[TC][GA]GGAGGCTGAGG[CT][AG]GGAGG -------------------------------------------------------------------------------- Time 5324.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CCAYRCCYRGCTAATTTTTAAA MEME-7 width = 22 sites = 50 llr = 1154 E-value = 7.6e-262 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 Description -------------------------------------------------------------------------------- Simplified A ::a:4:::4:::aa::::1888 pos.-specific C a9:4:994::a::::::::1:: probability G ::::6:::69:::::::::::: matrix T :1:6:116:::a::aaaa9212 bits 2.1 1.9 * * ** ***** 1.6 *** * ********* 1.4 *** ** ********** Relative 1.2 *** ** ********** Entropy 1.0 *** *** *********** ** (33.3 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CCATGCCTGGCTAATTTTTAAA consensus CA CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:40024155-40024255 + 55 7.10e-14 gactgagaca ccatgcctggctaatttttaaa tttttttcta chr2:32189596-32189696 + 65 7.10e-14 gcacatccca ccatgcctggctaatttttaaa atatttttgg chr1:18930888-18930988 - 28 7.10e-14 GTGCGTGCCA CCATGCCTGGCTAATTTTTAAA ATTTTTTGTA chr2:174555347-174555447 + 53 1.37e-13 gcacatgcca ccatgcccggctaatttttaaa atttatttga chr2:12183711-12183811 - 14 4.87e-13 AGCTGTGCCC CCATGCCCAGCTAATTTTTAAA TTTTTTGTAG chr1:233264956-233265056 - 30 7.01e-13 GTGCATGCCA CCACACCTGGCTAATTTTTAAA TTTTGTAGAG chr1:171349344-171349444 - 18 7.01e-13 GCAGATGTCA CCACACCTGGCTAATTTTTAAA TTTTTTTGTA chr2:186673972-186674072 + 53 7.01e-13 ggtgcaccca ccacacctggctaatttttaaa tttcattttg chr2:32514073-32514173 - 8 1.06e-12 GAACATGCCA CCATGCCTGGCTAATTTTTAAT TTTTTTG chr1:205876803-205876903 + 50 1.21e-12 gtgcgcacca ccatgcctggctaattttttaa atttttgtgg chr1:68334498-68334598 + 51 1.21e-12 gcatgcacca ccacacctagctaatttttaaa ttttttgtga chr1:63341265-63341365 + 32 1.21e-12 atgtgcacca ccacacctagctaatttttaaa ttcttttgta chr1:231167956-231168056 + 54 2.04e-12 caccccacca ccatgcctggctaattttaaaa ttttttgtag chr2:127363750-127363850 + 8 2.89e-12 cacacca ccatgcctggctaatttttcaa tttttactag chr1:39613138-39613238 + 62 4.26e-12 gcgtgcgcaa ccatgtctggctaatttttaaa ttttttgtgg chr1:62677848-62677948 - 18 4.26e-12 GTGTGCACCA CCATGTCTGGCTAATTTTTAAA TTTATTTTAG chr1:39470381-39470481 - 20 4.26e-12 GTGTGTACCA CCATGCTTAGCTAATTTTTAAA TTTTTTTTTG chr1:7761882-7761982 - 40 4.66e-12 GTACACATCA CCATACCTGGCTAATTTTAAAA TTTTTTTGTC chr1:75841192-75841292 + 57 4.66e-12 gcctgcacca ccatgcctggctaatttttaca ttttttgtag chr1:53026525-53026625 - 31 7.03e-12 GCGCATGCCA CCATGCCCAGCTAATTTTTCAA ATTTTTTGTA chr2:227371364-227371464 + 49 7.03e-12 gtgtagacca ccacacctggctaattttaaaa atatttttgt chr2:43955188-43955288 - 20 7.88e-12 GTGTGCACTA CCACGCCCAGCTAATTTTAAAA TTTTTTTGTG chr2:72879564-72879664 + 25 8.75e-12 gcatgtgcca ccacacccagctaattttttaa aattttttat chr1:62339925-62340025 - 27 9.64e-12 GCATGCACCA CTATGCCCAGCTAATTTTTAAA TTTTTGGTGG chr1:86305052-86305152 - 40 1.31e-11 GCACGTGCCA CCATGCCAAGCTAATTTTTAAA ATTATTTTTG chr3:13271513-13271613 - 21 1.31e-11 GTGTGCACCA CCATGCCCAGCTGATTTTTAAA ATTTTTGTAG chr1:18972189-18972289 - 25 1.60e-11 ATGTACTCCA CCATGCCCAACTAATTTTTAAA TTGTTTGTAG chr2:152484530-152484630 - 10 1.75e-11 GGACTACCCA CCATGCTCGGCTAATTTTTTAA GTTTTTTAT chr1:151948895-151948995 + 54 1.99e-11 gggtgtgcca ccatacccgactaatttttaaa aatttttttt chr1:44204695-44204795 + 39 2.19e-11 gtgcatatca ccatgcctggctaatttttact tttttttttt chr1:52228885-52228985 + 53 2.39e-11 agctgcacca ccacacctggctaatttttatt tttatttttg chr1:43730558-43730658 + 72 2.62e-11 gcccatgcca ccatgcctggctgatttttaat ttttttc chr1:32574322-32574422 - 22 2.90e-11 GTGCATGCCA CCACACCTGGCTAATTTTTAAG TTTTTTGTAG chr1:180048787-180048887 - 32 3.40e-11 GGCTGTGCCA CCAAGCCTGGCTAATTTTTAAT TTTTTTGTAG chr2:121822175-121822275 + 61 3.40e-11 gtgggtgcta ccatacccagctaatttttatt tttattttta chr2:126004637-126004737 - 28 3.72e-11 GTGAGCACCA CCATGCCTGGCTAATTTTTTTT TTTTTAATTT chr1:113017941-113018041 - 8 3.72e-11 GCATGTACCA CAACACCTGGCTAATTTTTAAA ATTTTTT chr2:68646779-68646879 - 13 4.04e-11 GCACACACCA CCACGCTCAGCTAATTTTTTAA TTTTTTCAAA chr2:101204435-101204535 + 55 4.35e-11 gcttgcacca ccacacccggctaagttttaaa ctttttgtag chr2:26157824-26157924 + 56 5.48e-11 gtatgtacca ccacacctggctaatttttcta ttttttgtag chr2:17678485-17678585 - 23 6.83e-11 GTGCATGCCA CCATGCCCAGCTAATTTTTTTT TTTTTTTTTT chr2:16929002-16929102 - 39 1.02e-10 GCGTGCACCA CCATGCACAGCTAATTTTTTAA TTTTTTTCAG chr1:382720-382820 - 16 1.19e-10 GCATGCCCCA CCACATTCGGCTAATTTTTAAA ATTTTTTTGT chr1:52315146-52315246 - 30 1.76e-10 GTATGTGCCA CCATACCCAGCTAATTTTTGTA TTTTTTGTAA chr1:51696882-51696982 - 17 1.90e-10 GCACAAGCCA CTACGCCCAGCTAATTTTTTAT TCTTTTAGAG chr1:28401602-28401702 + 53 2.53e-10 gcacgcacca ccacgctcatctaatttttaaa tttttttaga chr1:25519019-25519119 + 53 3.35e-10 gcatggacca ccacgactggctaatttttaac ttttttattt chr2:124971210-124971310 + 56 3.84e-10 gcttgcccca tcatgcctagctaatttttaga ttttttgcag chr2:196163756-196163856 - 35 5.73e-10 GTGCGAGCCA CTACACCCAGTTAATTTTTAAA TTTTTTCATA chr2:27709407-27709507 + 65 1.20e-09 gtgcacacca ccgtgcctggctaatttaaaaa attttttttg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:40024155-40024255 7.1e-14 54_[+7]_24 chr2:32189596-32189696 7.1e-14 64_[+7]_14 chr1:18930888-18930988 7.1e-14 27_[-7]_51 chr2:174555347-174555447 1.4e-13 52_[+7]_26 chr2:12183711-12183811 4.9e-13 13_[-7]_65 chr1:233264956-233265056 7e-13 29_[-7]_49 chr1:171349344-171349444 7e-13 17_[-7]_61 chr2:186673972-186674072 7e-13 52_[+7]_26 chr2:32514073-32514173 1.1e-12 7_[-7]_71 chr1:205876803-205876903 1.2e-12 49_[+7]_29 chr1:68334498-68334598 1.2e-12 50_[+7]_28 chr1:63341265-63341365 1.2e-12 31_[+7]_47 chr1:231167956-231168056 2e-12 53_[+7]_25 chr2:127363750-127363850 2.9e-12 7_[+7]_71 chr1:39613138-39613238 4.3e-12 61_[+7]_17 chr1:62677848-62677948 4.3e-12 17_[-7]_61 chr1:39470381-39470481 4.3e-12 19_[-7]_59 chr1:7761882-7761982 4.7e-12 39_[-7]_39 chr1:75841192-75841292 4.7e-12 56_[+7]_22 chr1:53026525-53026625 7e-12 30_[-7]_48 chr2:227371364-227371464 7e-12 48_[+7]_30 chr2:43955188-43955288 7.9e-12 19_[-7]_59 chr2:72879564-72879664 8.7e-12 24_[+7]_54 chr1:62339925-62340025 9.6e-12 26_[-7]_52 chr1:86305052-86305152 1.3e-11 39_[-7]_39 chr3:13271513-13271613 1.3e-11 20_[-7]_58 chr1:18972189-18972289 1.6e-11 24_[-7]_54 chr2:152484530-152484630 1.7e-11 9_[-7]_69 chr1:151948895-151948995 2e-11 53_[+7]_25 chr1:44204695-44204795 2.2e-11 38_[+7]_40 chr1:52228885-52228985 2.4e-11 52_[+7]_26 chr1:43730558-43730658 2.6e-11 71_[+7]_7 chr1:32574322-32574422 2.9e-11 21_[-7]_57 chr1:180048787-180048887 3.4e-11 31_[-7]_47 chr2:121822175-121822275 3.4e-11 60_[+7]_18 chr2:126004637-126004737 3.7e-11 27_[-7]_51 chr1:113017941-113018041 3.7e-11 7_[-7]_71 chr2:68646779-68646879 4e-11 12_[-7]_66 chr2:101204435-101204535 4.4e-11 54_[+7]_24 chr2:26157824-26157924 5.5e-11 55_[+7]_23 chr2:17678485-17678585 6.8e-11 22_[-7]_56 chr2:16929002-16929102 1e-10 38_[-7]_40 chr1:382720-382820 1.2e-10 15_[-7]_63 chr1:52315146-52315246 1.8e-10 29_[-7]_49 chr1:51696882-51696982 1.9e-10 16_[-7]_62 chr1:28401602-28401702 2.5e-10 52_[+7]_26 chr1:25519019-25519119 3.4e-10 52_[+7]_26 chr2:124971210-124971310 3.8e-10 55_[+7]_23 chr2:196163756-196163856 5.7e-10 34_[-7]_44 chr2:27709407-27709507 1.2e-09 64_[+7]_14 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCAYRCCYRGCTAATTTTTAAA width=22 seqs=50 chr1:40024155-40024255 ( 55) CCATGCCTGGCTAATTTTTAAA 1 chr2:32189596-32189696 ( 65) CCATGCCTGGCTAATTTTTAAA 1 chr1:18930888-18930988 ( 28) CCATGCCTGGCTAATTTTTAAA 1 chr2:174555347-174555447 ( 53) CCATGCCCGGCTAATTTTTAAA 1 chr2:12183711-12183811 ( 14) CCATGCCCAGCTAATTTTTAAA 1 chr1:233264956-233265056 ( 30) CCACACCTGGCTAATTTTTAAA 1 chr1:171349344-171349444 ( 18) CCACACCTGGCTAATTTTTAAA 1 chr2:186673972-186674072 ( 53) CCACACCTGGCTAATTTTTAAA 1 chr2:32514073-32514173 ( 8) CCATGCCTGGCTAATTTTTAAT 1 chr1:205876803-205876903 ( 50) CCATGCCTGGCTAATTTTTTAA 1 chr1:68334498-68334598 ( 51) CCACACCTAGCTAATTTTTAAA 1 chr1:63341265-63341365 ( 32) CCACACCTAGCTAATTTTTAAA 1 chr1:231167956-231168056 ( 54) CCATGCCTGGCTAATTTTAAAA 1 chr2:127363750-127363850 ( 8) CCATGCCTGGCTAATTTTTCAA 1 chr1:39613138-39613238 ( 62) CCATGTCTGGCTAATTTTTAAA 1 chr1:62677848-62677948 ( 18) CCATGTCTGGCTAATTTTTAAA 1 chr1:39470381-39470481 ( 20) CCATGCTTAGCTAATTTTTAAA 1 chr1:7761882-7761982 ( 40) CCATACCTGGCTAATTTTAAAA 1 chr1:75841192-75841292 ( 57) CCATGCCTGGCTAATTTTTACA 1 chr1:53026525-53026625 ( 31) CCATGCCCAGCTAATTTTTCAA 1 chr2:227371364-227371464 ( 49) CCACACCTGGCTAATTTTAAAA 1 chr2:43955188-43955288 ( 20) CCACGCCCAGCTAATTTTAAAA 1 chr2:72879564-72879664 ( 25) CCACACCCAGCTAATTTTTTAA 1 chr1:62339925-62340025 ( 27) CTATGCCCAGCTAATTTTTAAA 1 chr1:86305052-86305152 ( 40) CCATGCCAAGCTAATTTTTAAA 1 chr3:13271513-13271613 ( 21) CCATGCCCAGCTGATTTTTAAA 1 chr1:18972189-18972289 ( 25) CCATGCCCAACTAATTTTTAAA 1 chr2:152484530-152484630 ( 10) CCATGCTCGGCTAATTTTTTAA 1 chr1:151948895-151948995 ( 54) CCATACCCGACTAATTTTTAAA 1 chr1:44204695-44204795 ( 39) CCATGCCTGGCTAATTTTTACT 1 chr1:52228885-52228985 ( 53) CCACACCTGGCTAATTTTTATT 1 chr1:43730558-43730658 ( 72) CCATGCCTGGCTGATTTTTAAT 1 chr1:32574322-32574422 ( 22) CCACACCTGGCTAATTTTTAAG 1 chr1:180048787-180048887 ( 32) CCAAGCCTGGCTAATTTTTAAT 1 chr2:121822175-121822275 ( 61) CCATACCCAGCTAATTTTTATT 1 chr2:126004637-126004737 ( 28) CCATGCCTGGCTAATTTTTTTT 1 chr1:113017941-113018041 ( 8) CAACACCTGGCTAATTTTTAAA 1 chr2:68646779-68646879 ( 13) CCACGCTCAGCTAATTTTTTAA 1 chr2:101204435-101204535 ( 55) CCACACCCGGCTAAGTTTTAAA 1 chr2:26157824-26157924 ( 56) CCACACCTGGCTAATTTTTCTA 1 chr2:17678485-17678585 ( 23) CCATGCCCAGCTAATTTTTTTT 1 chr2:16929002-16929102 ( 39) CCATGCACAGCTAATTTTTTAA 1 chr1:382720-382820 ( 16) CCACATTCGGCTAATTTTTAAA 1 chr1:52315146-52315246 ( 30) CCATACCCAGCTAATTTTTGTA 1 chr1:51696882-51696982 ( 17) CTACGCCCAGCTAATTTTTTAT 1 chr1:28401602-28401702 ( 53) CCACGCTCATCTAATTTTTAAA 1 chr1:25519019-25519119 ( 53) CCACGACTGGCTAATTTTTAAC 1 chr2:124971210-124971310 ( 56) TCATGCCTAGCTAATTTTTAGA 1 chr2:196163756-196163856 ( 35) CTACACCCAGTTAATTTTTAAA 1 chr2:27709407-27709507 ( 65) CCGTGCCTGGCTAATTTAAAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 46257 bayes= 9.85197 E= 7.6e-262 -1229 203 -1229 -369 -369 194 -1229 -211 192 -1229 -358 -1229 -369 66 -1229 121 47 -1229 141 -1229 -369 194 -1229 -211 -369 187 -1229 -138 -369 73 -1229 116 62 -1229 132 -1229 -270 -1229 197 -369 -1229 203 -1229 -369 -1229 -1229 -1229 195 189 -1229 -259 -1229 195 -1229 -1229 -1229 -1229 -1229 -358 192 -1229 -1229 -1229 195 -1229 -1229 -1229 195 -369 -1229 -1229 192 -138 -1229 -1229 179 155 -200 -358 -70 166 -259 -358 -111 159 -358 -358 -53 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 7.6e-262 0.000000 0.980000 0.000000 0.020000 0.020000 0.920000 0.000000 0.060000 0.980000 0.000000 0.020000 0.000000 0.020000 0.380000 0.000000 0.600000 0.360000 0.000000 0.640000 0.000000 0.020000 0.920000 0.000000 0.060000 0.020000 0.880000 0.000000 0.100000 0.020000 0.400000 0.000000 0.580000 0.400000 0.000000 0.600000 0.000000 0.040000 0.000000 0.940000 0.020000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.960000 0.000000 0.040000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.020000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.000000 0.000000 0.980000 0.100000 0.000000 0.000000 0.900000 0.760000 0.060000 0.020000 0.160000 0.820000 0.040000 0.020000 0.120000 0.780000 0.020000 0.020000 0.180000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCAYRCCYRGCTAATTTTTAAA MEME-7 regular expression -------------------------------------------------------------------------------- CCA[TC][GA]CC[TC][GA]GCTAATTTTTAAA -------------------------------------------------------------------------------- Time 6125.92 secs. ******************************************************************************** ******************************************************************************** MOTIF RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 width = 31 sites = 50 llr = 1580 E-value = 1.3e-425 ******************************************************************************** -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 Description -------------------------------------------------------------------------------- Simplified A 5:11:11:7:5:4:::2:a1::::a:::9:: pos.-specific C :1:::::5:5:4:9a::1:::9a3::a::8: probability G 5:99:99:3:5:6:::8::9:::::9::::: matrix T 19::a::5:5:6:1:a:9::9::7:::a:19 bits 2.1 1.9 * ** * * * ** 1.6 * ** *** ** *** ***** * 1.4 ****** ********** ***** * Relative 1.2 ****** ********** ******* Entropy 1.0 ********* ******************** (45.6 bits) 0.8 ******************************* 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel GTGGTGGTACGTGCCTGTAGTCCTAGCTACT consensus A CGTACA C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr1:213297637-213297737 - 11 1.14e-18 TTAGCTTAGC GTGGTGGTACATGCCTGTAGTCCTAGCTACT TGGGAGGCCC chr3:15737515-15737615 - 7 1.21e-17 TTAGCCAGGG GTGGTGGCATGCACCTGTAGTCCTAGCTACT CAGGAA chr1:240202502-240202602 - 10 1.59e-17 ATAGCCAGGT GTGGTGGTGTGTGCCTGTAGTCCTAGCTACT TGAGAGGCT chr2:168801256-168801356 - 9 1.81e-17 TAATTAGGAT GTGGTGGTATGTGCCTGTAGTCCCAGCTACT CAAGAGGT chr2:50089504-50089604 + 49 3.63e-17 ttagccaggc atggtggtgtgcacctgtagtcctagctact agagaggcca chr2:28159975-28160075 - 31 6.13e-17 TTAGCTGGGC ATGGTGGTGCATACCTGTAGTCCCAGCTACT TGGAAGGCTC chr1:53995528-53995628 + 60 8.89e-17 gactacggtt gtagtggcatgtgcctgtagtcctagctact tgggaggctg chr1:12365901-12366001 - 20 1.12e-16 TTAGCCAGGC ATGGTGGTGCATGCCTATAGTCCTAGCTACT CAGTAGGCAG chr1:28170431-28170531 + 52 1.44e-16 ttagccaggc atggtggcacatgcctgcagtcctagctact atggaggctg chr1:42821729-42821829 + 38 1.65e-16 atagctgggc ttggtggcatgcacctgtagtcctagctact agggagactg chr2:149305228-149305328 - 31 3.18e-16 ATTAGCCACC ATGATGGCATGTGCCTGTAGTCCCAGCTACT TGGGACACTG chr1:219100191-219100291 + 46 3.53e-16 ttagctggtt gtggtggtgtgtgcctatagtcccagctact ccagaggctg chr2:172900253-172900353 - 21 4.35e-16 TTAGCCAAGT GTGGTAGCACATGCCTGTAGTCCCAGCTACT CGGGCAGCTG chr2:54074057-54074157 + 48 4.35e-16 ttagctgggt ttggtggtgtgcacctgtagtcctagctact tagtgtgctg chr2:199834897-199834997 + 44 4.83e-16 ttagctggac atggtgatacatgcctgtagtcctagctatt caggagtctg chr1:168263864-168263964 - 22 6.95e-16 TTAGATGGGC ATGGTGGTATGTGCCTGTAGTCCTAGCTTCT TGGGAGTTTG chr2:146143028-146143128 - 45 1.07e-15 TTAGTTGGGT GTGGTGGCATGCACCTGTACTCCTAGCTACT TAGGAGACTG chr1:229691887-229691987 - 26 1.28e-15 TTATCCAGGT GTGGTGGTGCATGCCTGTATTCCTAGCTACT CAGGACACTA chr2:95721285-95721385 - 22 1.28e-15 ATTGGCAGGT GTGGTGGCATGCACCTGTAGTCTTAGCTACT CAAAGCTGAG chr1:109581981-109582081 - 32 1.28e-15 TTAGCTAAGC ATGGTGGTGCATGCCTGTAGTCCTAGCTAAT CCTCCTACCC chr1:231245256-231245356 - 20 1.40e-15 CCAGTCAGGC GTGGTGGTATGCGCCTACAGTCCTAGCTACT GGGAGGCTGA chr1:178494111-178494211 + 69 1.40e-15 ttagccaggt atggtggcatgcacctgtagtcccagctgct c chr1:226327209-226327309 - 14 1.54e-15 CTAGCCAGTT ATGGTGGCACATGCCTATAGCCCTAGCTACT TGGGAAGCTG chr1:217611897-217611997 + 38 1.71e-15 ttagccgggc atgatgacatgcacctgtagtcctagctact cgggagtctg chr2:43725836-43725936 + 35 1.89e-15 ttagctgggc atggtggcatgtgcctgtagtgctagctatt tgggaggctg chr2:70379389-70379489 - 19 2.08e-15 CTAGCCAGGC ATGGTGGTGCACACCTGTAATCCCAGCTACT GAGGAGGCTG chr1:9179305-9179405 + 40 2.29e-15 ttagctgggc atggtgacatatgcctgtagtgctagctact caggatgctg chr2:170738668-170738768 + 66 2.29e-15 ttagttgtgc atggtgatatgtgcctgtagttctagctact tagg chr1:110979405-110979505 - 25 2.50e-15 TTATTCAGGC ATGGTGACACACATCTGTAGTCCTAGCTACT CATAAGGCTT chr2:61524643-61524743 + 51 2.96e-15 ttagcgaggc atggtgacacgcacctgtagccctagctact cagaaagttg chr2:154046026-154046126 + 66 3.54e-15 gaagatgggc atggtcatacatgcctgtagtcctagctact tggg chr1:50874368-50874468 - 24 3.54e-15 TTAGCTGGGT TTGGTGGTGCTCGCCTGTAGTCCTAGCTACT TGGGAGCTGA chr3:11398581-11398681 + 53 5.22e-15 attgccaggt gttatggcacatgcctgtagtcctagctact tggaggctga chr1:180418301-180418401 + 44 6.24e-15 ttagctgggt gtggtggtgcgtgcctgtagtcctacctatt tgggaagcta chr2:135701102-135701202 + 61 6.24e-15 ttagccaggt gcagtggtgcacacctgtagtcctagctact tgggagact chr2:68307910-68308010 + 53 7.42e-15 ttggcttggc gtggtggcatgtggctgtagtcccagctatt caggagtctg chr2:240129175-240129275 - 19 7.42e-15 TGAGCTGAGC ATGGTGGCACGTGCCTATAGTCCTAGCTGTT TGGGAGGCTA chr1:27778785-27778885 - 32 1.07e-14 CTTGCCAGGC GCAGTGGCATATGCCTGTAGTCCTAGCTATT TGGGAGACTC chr1:22007871-22007971 + 58 1.18e-14 ttagtcaggc atggtggcactcgcctgtagtcccaactact tgataggctg chr1:237371164-237371264 - 23 1.40e-14 TTAGCCAGGC GTGGTAGCACACACCTGTAGTCCTAGCTACA CAGGAGGTTG chr1:13477555-13477655 + 56 1.52e-14 ttagccaggt gtggtggtacacacctgtagttcaagctact caggaggctg chr2:23661059-23661159 + 41 1.65e-14 ttagctgggt atggtggcatgcacttgtagtcccagctatt tgggaagctg chr1:183119890-183119990 + 40 1.78e-14 ttagctgggc atggtggcacacacctgtggtcctagctacc tcggaggctg chr1:173800665-173800765 + 53 2.49e-14 acagccaggt gtaatggtatacacctatagtcccagctact cacaaggctg chr1:245430386-245430486 + 46 2.71e-14 gcaaccaagt gcagtggcacatacctgtaatcctagctact tgcggggctg chr3:15337638-15337738 + 39 6.88e-14 ttagcggagt gtggtggtgtgtacctatagtcctaactacc caggagggtg chr2:206302034-206302134 - 14 7.97e-14 TAAGCCAGGC ATGGTGGTACATGTCTATAGTCCCAGATACT CAAGAGGCTG chr2:32646973-32647073 - 15 1.67e-13 GTAGCTGAGT GTGGTGGTGCGTATCTGTAAACCTAGCTACT CAGGAGTTTA chr1:25976139-25976239 - 24 1.79e-13 ACAGCCAAGT GTGATAGTGCATGCCTGTAGTCCCGGCTACT TTGAAGCCTG chr2:72537973-72538073 - 21 2.07e-13 TTAGCCGGCT GTGGTTGTACGTACCTGCAGTCCTAGTTACT TTGGGAGGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:213297637-213297737 1.1e-18 10_[-8]_59 chr3:15737515-15737615 1.2e-17 6_[-8]_63 chr1:240202502-240202602 1.6e-17 9_[-8]_60 chr2:168801256-168801356 1.8e-17 8_[-8]_61 chr2:50089504-50089604 3.6e-17 48_[+8]_21 chr2:28159975-28160075 6.1e-17 30_[-8]_39 chr1:53995528-53995628 8.9e-17 59_[+8]_10 chr1:12365901-12366001 1.1e-16 19_[-8]_50 chr1:28170431-28170531 1.4e-16 51_[+8]_18 chr1:42821729-42821829 1.6e-16 37_[+8]_32 chr2:149305228-149305328 3.2e-16 30_[-8]_39 chr1:219100191-219100291 3.5e-16 45_[+8]_24 chr2:172900253-172900353 4.3e-16 20_[-8]_49 chr2:54074057-54074157 4.3e-16 47_[+8]_22 chr2:199834897-199834997 4.8e-16 43_[+8]_26 chr1:168263864-168263964 6.9e-16 21_[-8]_48 chr2:146143028-146143128 1.1e-15 44_[-8]_25 chr1:229691887-229691987 1.3e-15 25_[-8]_44 chr2:95721285-95721385 1.3e-15 21_[-8]_48 chr1:109581981-109582081 1.3e-15 31_[-8]_38 chr1:231245256-231245356 1.4e-15 19_[-8]_50 chr1:178494111-178494211 1.4e-15 68_[+8]_1 chr1:226327209-226327309 1.5e-15 13_[-8]_56 chr1:217611897-217611997 1.7e-15 37_[+8]_32 chr2:43725836-43725936 1.9e-15 34_[+8]_35 chr2:70379389-70379489 2.1e-15 18_[-8]_51 chr1:9179305-9179405 2.3e-15 39_[+8]_30 chr2:170738668-170738768 2.3e-15 65_[+8]_4 chr1:110979405-110979505 2.5e-15 24_[-8]_45 chr2:61524643-61524743 3e-15 50_[+8]_19 chr2:154046026-154046126 3.5e-15 65_[+8]_4 chr1:50874368-50874468 3.5e-15 23_[-8]_46 chr3:11398581-11398681 5.2e-15 52_[+8]_17 chr1:180418301-180418401 6.2e-15 43_[+8]_26 chr2:135701102-135701202 6.2e-15 60_[+8]_9 chr2:68307910-68308010 7.4e-15 52_[+8]_17 chr2:240129175-240129275 7.4e-15 18_[-8]_51 chr1:27778785-27778885 1.1e-14 31_[-8]_38 chr1:22007871-22007971 1.2e-14 57_[+8]_12 chr1:237371164-237371264 1.4e-14 22_[-8]_47 chr1:13477555-13477655 1.5e-14 55_[+8]_14 chr2:23661059-23661159 1.6e-14 40_[+8]_29 chr1:183119890-183119990 1.8e-14 39_[+8]_30 chr1:173800665-173800765 2.5e-14 52_[+8]_17 chr1:245430386-245430486 2.7e-14 45_[+8]_24 chr3:15337638-15337738 6.9e-14 38_[+8]_31 chr2:206302034-206302134 8e-14 13_[-8]_56 chr2:32646973-32647073 1.7e-13 14_[-8]_55 chr1:25976139-25976239 1.8e-13 23_[-8]_46 chr2:72537973-72538073 2.1e-13 20_[-8]_49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT width=31 seqs=50 chr1:213297637-213297737 ( 11) GTGGTGGTACATGCCTGTAGTCCTAGCTACT 1 chr3:15737515-15737615 ( 7) GTGGTGGCATGCACCTGTAGTCCTAGCTACT 1 chr1:240202502-240202602 ( 10) GTGGTGGTGTGTGCCTGTAGTCCTAGCTACT 1 chr2:168801256-168801356 ( 9) GTGGTGGTATGTGCCTGTAGTCCCAGCTACT 1 chr2:50089504-50089604 ( 49) ATGGTGGTGTGCACCTGTAGTCCTAGCTACT 1 chr2:28159975-28160075 ( 31) ATGGTGGTGCATACCTGTAGTCCCAGCTACT 1 chr1:53995528-53995628 ( 60) GTAGTGGCATGTGCCTGTAGTCCTAGCTACT 1 chr1:12365901-12366001 ( 20) ATGGTGGTGCATGCCTATAGTCCTAGCTACT 1 chr1:28170431-28170531 ( 52) ATGGTGGCACATGCCTGCAGTCCTAGCTACT 1 chr1:42821729-42821829 ( 38) TTGGTGGCATGCACCTGTAGTCCTAGCTACT 1 chr2:149305228-149305328 ( 31) ATGATGGCATGTGCCTGTAGTCCCAGCTACT 1 chr1:219100191-219100291 ( 46) GTGGTGGTGTGTGCCTATAGTCCCAGCTACT 1 chr2:172900253-172900353 ( 21) GTGGTAGCACATGCCTGTAGTCCCAGCTACT 1 chr2:54074057-54074157 ( 48) TTGGTGGTGTGCACCTGTAGTCCTAGCTACT 1 chr2:199834897-199834997 ( 44) ATGGTGATACATGCCTGTAGTCCTAGCTATT 1 chr1:168263864-168263964 ( 22) ATGGTGGTATGTGCCTGTAGTCCTAGCTTCT 1 chr2:146143028-146143128 ( 45) GTGGTGGCATGCACCTGTACTCCTAGCTACT 1 chr1:229691887-229691987 ( 26) GTGGTGGTGCATGCCTGTATTCCTAGCTACT 1 chr2:95721285-95721385 ( 22) GTGGTGGCATGCACCTGTAGTCTTAGCTACT 1 chr1:109581981-109582081 ( 32) ATGGTGGTGCATGCCTGTAGTCCTAGCTAAT 1 chr1:231245256-231245356 ( 20) GTGGTGGTATGCGCCTACAGTCCTAGCTACT 1 chr1:178494111-178494211 ( 69) ATGGTGGCATGCACCTGTAGTCCCAGCTGCT 1 chr1:226327209-226327309 ( 14) ATGGTGGCACATGCCTATAGCCCTAGCTACT 1 chr1:217611897-217611997 ( 38) ATGATGACATGCACCTGTAGTCCTAGCTACT 1 chr2:43725836-43725936 ( 35) ATGGTGGCATGTGCCTGTAGTGCTAGCTATT 1 chr2:70379389-70379489 ( 19) ATGGTGGTGCACACCTGTAATCCCAGCTACT 1 chr1:9179305-9179405 ( 40) ATGGTGACATATGCCTGTAGTGCTAGCTACT 1 chr2:170738668-170738768 ( 66) ATGGTGATATGTGCCTGTAGTTCTAGCTACT 1 chr1:110979405-110979505 ( 25) ATGGTGACACACATCTGTAGTCCTAGCTACT 1 chr2:61524643-61524743 ( 51) ATGGTGACACGCACCTGTAGCCCTAGCTACT 1 chr2:154046026-154046126 ( 66) ATGGTCATACATGCCTGTAGTCCTAGCTACT 1 chr1:50874368-50874468 ( 24) TTGGTGGTGCTCGCCTGTAGTCCTAGCTACT 1 chr3:11398581-11398681 ( 53) GTTATGGCACATGCCTGTAGTCCTAGCTACT 1 chr1:180418301-180418401 ( 44) GTGGTGGTGCGTGCCTGTAGTCCTACCTATT 1 chr2:135701102-135701202 ( 61) GCAGTGGTGCACACCTGTAGTCCTAGCTACT 1 chr2:68307910-68308010 ( 53) GTGGTGGCATGTGGCTGTAGTCCCAGCTATT 1 chr2:240129175-240129275 ( 19) ATGGTGGCACGTGCCTATAGTCCTAGCTGTT 1 chr1:27778785-27778885 ( 32) GCAGTGGCATATGCCTGTAGTCCTAGCTATT 1 chr1:22007871-22007971 ( 58) ATGGTGGCACTCGCCTGTAGTCCCAACTACT 1 chr1:237371164-237371264 ( 23) GTGGTAGCACACACCTGTAGTCCTAGCTACA 1 chr1:13477555-13477655 ( 56) GTGGTGGTACACACCTGTAGTTCAAGCTACT 1 chr2:23661059-23661159 ( 41) ATGGTGGCATGCACTTGTAGTCCCAGCTATT 1 chr1:183119890-183119990 ( 40) ATGGTGGCACACACCTGTGGTCCTAGCTACC 1 chr1:173800665-173800765 ( 53) GTAATGGTATACACCTATAGTCCCAGCTACT 1 chr1:245430386-245430486 ( 46) GCAGTGGCACATACCTGTAATCCTAGCTACT 1 chr3:15337638-15337738 ( 39) GTGGTGGTGTGTACCTATAGTCCTAACTACC 1 chr2:206302034-206302134 ( 14) ATGGTGGTACATGTCTATAGTCCCAGATACT 1 chr2:32646973-32647073 ( 15) GTGGTGGTGCGTATCTGTAAACCTAGCTACT 1 chr1:25976139-25976239 ( 24) GTGATAGTGCATGCCTGTAGTCCCGGCTACT 1 chr2:72537973-72538073 ( 21) GTGGTTGTACGTACCTGCAGTCCTAGTTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 40857 bayes= 9.67267 E= 1.3e-425 83 -1229 100 -211 -1229 -200 -1229 186 -138 -1229 187 -369 -138 -1229 190 -1229 -1229 -1229 -1229 195 -211 -358 190 -369 -89 -1229 184 -1229 -1229 100 -1229 100 143 -1229 32 -1229 -1229 117 -1229 83 83 -1229 106 -270 -1229 73 -1229 121 76 -1229 122 -1229 -1229 194 -358 -211 -1229 203 -1229 -369 -1229 -1229 -1229 195 -70 -1229 180 -1229 -1229 -200 -1229 186 192 -1229 -358 -1229 -211 -358 190 -369 -369 -259 -1229 186 -1229 194 -259 -270 -1229 203 -1229 -369 -369 11 -1229 147 192 -1229 -358 -1229 -270 -358 197 -1229 -369 200 -1229 -369 -1229 -1229 -1229 195 186 -1229 -259 -369 -369 180 -1229 -89 -369 -259 -1229 186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 1.3e-425 0.460000 0.000000 0.480000 0.060000 0.000000 0.060000 0.000000 0.940000 0.100000 0.000000 0.880000 0.020000 0.100000 0.000000 0.900000 0.000000 0.000000 0.000000 0.000000 1.000000 0.060000 0.020000 0.900000 0.020000 0.140000 0.000000 0.860000 0.000000 0.000000 0.480000 0.000000 0.520000 0.700000 0.000000 0.300000 0.000000 0.000000 0.540000 0.000000 0.460000 0.460000 0.000000 0.500000 0.040000 0.000000 0.400000 0.000000 0.600000 0.440000 0.000000 0.560000 0.000000 0.000000 0.920000 0.020000 0.060000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.160000 0.000000 0.840000 0.000000 0.000000 0.060000 0.000000 0.940000 0.980000 0.000000 0.020000 0.000000 0.060000 0.020000 0.900000 0.020000 0.020000 0.040000 0.000000 0.940000 0.000000 0.920000 0.040000 0.040000 0.000000 0.980000 0.000000 0.020000 0.020000 0.260000 0.000000 0.720000 0.980000 0.000000 0.020000 0.000000 0.040000 0.020000 0.940000 0.000000 0.020000 0.960000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.940000 0.000000 0.040000 0.020000 0.020000 0.840000 0.000000 0.140000 0.020000 0.040000 0.000000 0.940000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RTGGTGGYAYRYRCCTGTAGTCCTAGCTACT MEME-8 regular expression -------------------------------------------------------------------------------- [GA]TGGTGG[TC][AG][CT][GA][TC][GA]CCTGTAGTCC[TC]AGCTACT -------------------------------------------------------------------------------- Time 6899.62 secs. ******************************************************************************** ******************************************************************************** MOTIF YRCTATGTTGCCCAGGCTGG MEME-9 width = 20 sites = 50 llr = 1016 E-value = 1.9e-207 ******************************************************************************** -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :4::7::::1:::a1::::: pos.-specific C 61911:::1:999::19::: probability G :5::1:9::9::::99::99 matrix T 4::9:a:a9:111:::1a1: bits 2.1 1.9 * * * * 1.6 * *** * ** * * 1.4 ** **** ********** Relative 1.2 ** *************** Entropy 1.0 * ** *************** (29.3 bits) 0.8 * ** *************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CGCTATGTTGCCCAGGCTGG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr2:47638098-47638198 - 68 1.47e-12 GACGAAGTCT CACTATGTTGCCCAGGCTGG TCTTGAGCTC chr1:53369587-53369687 - 28 2.23e-12 GATGGGGTCT TGCTATGTTGCCCAGGCTGG CCTCAAAGTC chr2:70055796-70055896 - 68 2.23e-12 GACGGAGTCT TGCTATGTTGCCCAGGCTGG TCTTGAACTC chr1:45813798-45813898 + 24 2.23e-12 gatgaagtct tgctatgttgcccaggctgg tcttgagctc chr1:116880117-116880217 - 69 3.06e-12 GATGAGGTCT TACTATGTTGCCCAGGCTGG TCCCAAACTC chr1:194655732-194655832 + 72 4.41e-12 gattgggtct ccctatgttgcccaggctgg tcttgagct chr2:72879564-72879664 + 75 4.41e-12 gacaaggtct ccctatgttgcccaggctgg tctcaa chr1:19134114-19134214 - 75 5.11e-12 GAGTCT CACTCTGTTGCCCAGGCTGG TGTGCAGTGG chr1:41794929-41795014 + 29 6.47e-12 gacagggtct tgctctgttgcccaggctgg aatgtagtgg chr2:229746533-229746633 - 50 1.31e-11 GATGAAGTCT CACTATGTTACCCAGGCTGG TCTTGTACTC chr1:146482664-146482764 + 17 1.55e-11 acaggagtct cactatgttgctcaggctgg tatggaaccc chr1:39586102-39586185 - 26 2.95e-11 AATGGGGTCT TGCTATGTTGCCCAGGCTTG TCTTGAACTC chr1:9619472-9619572 - 61 3.19e-11 GATGGGGTCT CACTATGTTGCCCAGCCTGG TCTCAAATTC chr1:205208591-205208691 - 69 3.66e-11 GATGGGGTCT CACTTTGTTGCCCAGGCTGG TCTCAAACTC chr1:3045804-3045904 - 69 4.76e-11 GCCAGGGTCT TGCTTTGTTGCCCAGGCTGG TTTCAAATTC chr2:230194318-230194418 - 68 4.76e-11 GACCAGGTCT TGCTATGTTGTCCAGGCTGG TCTTGAAATC chr1:212551229-212551329 + 16 4.76e-11 gccagggtct cgctattttgcccaggctgg ccttgaactc chr1:36013242-36013342 + 14 4.93e-11 gacagggtct cactatgttgcccaggctag tttcaagctt chr1:90698932-90699032 + 69 6.45e-11 aacagggtct ttctatgttgcccaggctgg tctcaaactc chr1:1846625-1846725 + 69 8.71e-11 gagagggtct cactatgtggcccaggctgg tcttcaactc chr2:164801018-164801118 - 63 8.71e-11 GATGAGATCT CACTATGTTCCCCAGGCTGG TCTTGAACTC chr2:127751447-127751547 - 62 9.65e-11 GACAGGATTT CGCTCTGTTGCCCAGGTTGG AGTACACTGG chr1:243389021-243389121 - 64 1.08e-10 GACAGAGTCT CGCTCTGTCGCCCAGGCTGG AGTGCGATGG chr2:127363750-127363850 + 51 1.19e-10 catggggtct tgctatgtttcccaggctgg tcttgaaccc chr1:19005090-19005190 + 69 2.01e-10 gatggagtct ccctatattgcccaggctgg tcttgaactc chr2:203257033-203257128 + 32 2.34e-10 gttggggtct caccatgtcgcccaggctgg tctcaaactc chr2:224674469-224674569 + 15 2.56e-10 gacggggtct caccatgttgcccagcctgg tctcaaactc chr2:231966675-231966775 + 9 2.56e-10 cagggtct tgctatgttgctcaggcttg tctgaaactc chr2:206666771-206666860 - 57 2.56e-10 GATGAGGTCT TGCCATGTTGCCTAGGCTGG TCTCAATTTC chr1:150587498-150587598 + 33 3.84e-10 ggcagggttt tgctatgttgctcaagctgg tctcgaactc chr3:994760-994860 + 75 4.23e-10 gttggggtct ccctgtgttacccaggctgg tttcaa chr1:17495896-17495996 + 16 5.13e-10 gacagggtct tgccatgttgcccagactgg tctcggactc chr2:151268150-151268250 + 13 5.61e-10 gatggggtct cactgtgttggccaggctgg tctcaaactc chr1:171484430-171484530 + 72 6.20e-10 ggtagggtct cactatgttgcccagattgg tcttgaact chr1:11008472-11008572 - 54 6.20e-10 GACAGGGTCT CATTATGTTGCCTAGGCTGG TTATGAATTC chr2:206798363-206798454 - 42 8.71e-10 ATGGGGGTCT TGCAATGTTACCCAGGCTGG TCTTCAACTC chr1:109276348-109276448 + 14 8.71e-10 ggcggggtct cactatgttgatcaggctgg tcttgaattc chr1:42762139-42762239 - 69 1.14e-09 GACAGAGTCT TGCTCTGTCACCCAGGCTGG AGTGCAGTGG chr1:32242942-32243042 + 14 1.14e-09 atgggggtct ccctgttttgcccaggctgg tcttcaactc chr1:227712605-227712705 - 68 1.22e-09 GACAGGATCT CACTGTGTTGCTCAGGCTTG TCTCCAACTC chr1:211536312-211536412 - 63 1.32e-09 GATGGGGTTT TGCTGTGTTACCCAGGCTTG TCTTGATCTC chr2:128215745-128215845 - 69 1.32e-09 GACAGGGTGT TGCTATGTTGCCCAGGTTGT TCTCCAACTC chr2:202063622-202063722 + 18 1.57e-09 gtggcagtct tggtatgttgcccaagctgg tcttgaactt chr1:224268510-224268610 + 12 1.57e-09 gatggggtct tgctatgctgtccaggctgg tcgtgacctc chr1:245205700-245205800 + 27 1.82e-09 catagggtct cgttctgttgcctaggctgg agtgcagtgg chr2:24978727-24978827 - 17 3.09e-09 GACAAGGTCT CACTATGTTGCCAGGGCTGG TCTTGATCTC chr1:178268049-178268149 - 61 6.06e-09 GGTAGGGTCT CACTCTATTGCCCATGCTGG TCTTAAATTC chr1:39890158-39890258 + 27 9.39e-09 gacagggtct tactatgttgcccaacctga tcttgaactc chr2:43679838-43679938 + 18 1.64e-08 gacagggtct cactatgttgtccaggatga tcttgaacta chr1:42885080-42885180 - 64 1.87e-08 GACAAGTTCT CGCCATGTTGCCTAGGTTAG TCTCGAACTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:47638098-47638198 1.5e-12 67_[-9]_13 chr1:53369587-53369687 2.2e-12 27_[-9]_53 chr2:70055796-70055896 2.2e-12 67_[-9]_13 chr1:45813798-45813898 2.2e-12 23_[+9]_57 chr1:116880117-116880217 3.1e-12 68_[-9]_12 chr1:194655732-194655832 4.4e-12 71_[+9]_9 chr2:72879564-72879664 4.4e-12 74_[+9]_6 chr1:19134114-19134214 5.1e-12 74_[-9]_6 chr1:41794929-41795014 6.5e-12 28_[+9]_37 chr2:229746533-229746633 1.3e-11 49_[-9]_31 chr1:146482664-146482764 1.5e-11 16_[+9]_64 chr1:39586102-39586185 2.9e-11 25_[-9]_38 chr1:9619472-9619572 3.2e-11 60_[-9]_20 chr1:205208591-205208691 3.7e-11 68_[-9]_12 chr1:3045804-3045904 4.8e-11 68_[-9]_12 chr2:230194318-230194418 4.8e-11 67_[-9]_13 chr1:212551229-212551329 4.8e-11 15_[+9]_65 chr1:36013242-36013342 4.9e-11 13_[+9]_67 chr1:90698932-90699032 6.4e-11 68_[+9]_12 chr1:1846625-1846725 8.7e-11 68_[+9]_12 chr2:164801018-164801118 8.7e-11 62_[-9]_18 chr2:127751447-127751547 9.7e-11 61_[-9]_19 chr1:243389021-243389121 1.1e-10 63_[-9]_17 chr2:127363750-127363850 1.2e-10 50_[+9]_30 chr1:19005090-19005190 2e-10 68_[+9]_12 chr2:203257033-203257128 2.3e-10 31_[+9]_44 chr2:224674469-224674569 2.6e-10 14_[+9]_66 chr2:231966675-231966775 2.6e-10 8_[+9]_72 chr2:206666771-206666860 2.6e-10 56_[-9]_13 chr1:150587498-150587598 3.8e-10 32_[+9]_48 chr3:994760-994860 4.2e-10 74_[+9]_6 chr1:17495896-17495996 5.1e-10 15_[+9]_65 chr2:151268150-151268250 5.6e-10 12_[+9]_68 chr1:171484430-171484530 6.2e-10 71_[+9]_9 chr1:11008472-11008572 6.2e-10 53_[-9]_27 chr2:206798363-206798454 8.7e-10 41_[-9]_30 chr1:109276348-109276448 8.7e-10 13_[+9]_67 chr1:42762139-42762239 1.1e-09 68_[-9]_12 chr1:32242942-32243042 1.1e-09 13_[+9]_67 chr1:227712605-227712705 1.2e-09 67_[-9]_13 chr1:211536312-211536412 1.3e-09 62_[-9]_18 chr2:128215745-128215845 1.3e-09 68_[-9]_12 chr2:202063622-202063722 1.6e-09 17_[+9]_63 chr1:224268510-224268610 1.6e-09 11_[+9]_69 chr1:245205700-245205800 1.8e-09 26_[+9]_54 chr2:24978727-24978827 3.1e-09 16_[-9]_64 chr1:178268049-178268149 6.1e-09 60_[-9]_20 chr1:39890158-39890258 9.4e-09 26_[+9]_54 chr2:43679838-43679938 1.6e-08 17_[+9]_63 chr1:42885080-42885180 1.9e-08 63_[-9]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YRCTATGTTGCCCAGGCTGG width=20 seqs=50 chr2:47638098-47638198 ( 68) CACTATGTTGCCCAGGCTGG 1 chr1:53369587-53369687 ( 28) TGCTATGTTGCCCAGGCTGG 1 chr2:70055796-70055896 ( 68) TGCTATGTTGCCCAGGCTGG 1 chr1:45813798-45813898 ( 24) TGCTATGTTGCCCAGGCTGG 1 chr1:116880117-116880217 ( 69) TACTATGTTGCCCAGGCTGG 1 chr1:194655732-194655832 ( 72) CCCTATGTTGCCCAGGCTGG 1 chr2:72879564-72879664 ( 75) CCCTATGTTGCCCAGGCTGG 1 chr1:19134114-19134214 ( 75) CACTCTGTTGCCCAGGCTGG 1 chr1:41794929-41795014 ( 29) TGCTCTGTTGCCCAGGCTGG 1 chr2:229746533-229746633 ( 50) CACTATGTTACCCAGGCTGG 1 chr1:146482664-146482764 ( 17) CACTATGTTGCTCAGGCTGG 1 chr1:39586102-39586185 ( 26) TGCTATGTTGCCCAGGCTTG 1 chr1:9619472-9619572 ( 61) CACTATGTTGCCCAGCCTGG 1 chr1:205208591-205208691 ( 69) CACTTTGTTGCCCAGGCTGG 1 chr1:3045804-3045904 ( 69) TGCTTTGTTGCCCAGGCTGG 1 chr2:230194318-230194418 ( 68) TGCTATGTTGTCCAGGCTGG 1 chr1:212551229-212551329 ( 16) CGCTATTTTGCCCAGGCTGG 1 chr1:36013242-36013342 ( 14) CACTATGTTGCCCAGGCTAG 1 chr1:90698932-90699032 ( 69) TTCTATGTTGCCCAGGCTGG 1 chr1:1846625-1846725 ( 69) CACTATGTGGCCCAGGCTGG 1 chr2:164801018-164801118 ( 63) CACTATGTTCCCCAGGCTGG 1 chr2:127751447-127751547 ( 62) CGCTCTGTTGCCCAGGTTGG 1 chr1:243389021-243389121 ( 64) CGCTCTGTCGCCCAGGCTGG 1 chr2:127363750-127363850 ( 51) TGCTATGTTTCCCAGGCTGG 1 chr1:19005090-19005190 ( 69) CCCTATATTGCCCAGGCTGG 1 chr2:203257033-203257128 ( 32) CACCATGTCGCCCAGGCTGG 1 chr2:224674469-224674569 ( 15) CACCATGTTGCCCAGCCTGG 1 chr2:231966675-231966775 ( 9) TGCTATGTTGCTCAGGCTTG 1 chr2:206666771-206666860 ( 57) TGCCATGTTGCCTAGGCTGG 1 chr1:150587498-150587598 ( 33) TGCTATGTTGCTCAAGCTGG 1 chr3:994760-994860 ( 75) CCCTGTGTTACCCAGGCTGG 1 chr1:17495896-17495996 ( 16) TGCCATGTTGCCCAGACTGG 1 chr2:151268150-151268250 ( 13) CACTGTGTTGGCCAGGCTGG 1 chr1:171484430-171484530 ( 72) CACTATGTTGCCCAGATTGG 1 chr1:11008472-11008572 ( 54) CATTATGTTGCCTAGGCTGG 1 chr2:206798363-206798454 ( 42) TGCAATGTTACCCAGGCTGG 1 chr1:109276348-109276448 ( 14) CACTATGTTGATCAGGCTGG 1 chr1:42762139-42762239 ( 69) TGCTCTGTCACCCAGGCTGG 1 chr1:32242942-32243042 ( 14) CCCTGTTTTGCCCAGGCTGG 1 chr1:227712605-227712705 ( 68) CACTGTGTTGCTCAGGCTTG 1 chr1:211536312-211536412 ( 63) TGCTGTGTTACCCAGGCTTG 1 chr2:128215745-128215845 ( 69) TGCTATGTTGCCCAGGTTGT 1 chr2:202063622-202063722 ( 18) TGGTATGTTGCCCAAGCTGG 1 chr1:224268510-224268610 ( 12) TGCTATGCTGTCCAGGCTGG 1 chr1:245205700-245205800 ( 27) CGTTCTGTTGCCTAGGCTGG 1 chr2:24978727-24978827 ( 17) CACTATGTTGCCAGGGCTGG 1 chr1:178268049-178268149 ( 61) CACTCTATTGCCCATGCTGG 1 chr1:39890158-39890258 ( 27) TACTATGTTGCCCAACCTGA 1 chr2:43679838-43679938 ( 18) CACTATGTTGTCCAGGATGA 1 chr1:42885080-42885180 ( 64) CGCCATGTTGCCTAGGTTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 47457 bayes= 9.88896 E= 1.9e-207 -1229 127 -1229 69 69 -127 94 -369 -1229 197 -358 -270 -369 -127 -1229 176 147 -78 -127 -270 -1229 -1229 -1229 195 -270 -1229 194 -270 -1229 -358 -1229 192 -1229 -200 -358 183 -138 -358 184 -369 -369 190 -358 -211 -1229 190 -1229 -138 -369 190 -1229 -170 192 -1229 -358 -1229 -211 -1229 194 -369 -270 -200 190 -1229 -369 190 -1229 -170 -1229 -1229 -1229 195 -270 -1229 187 -170 -270 -1229 197 -369 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 50 E= 1.9e-207 0.000000 0.580000 0.000000 0.420000 0.420000 0.100000 0.460000 0.020000 0.000000 0.940000 0.020000 0.040000 0.020000 0.100000 0.000000 0.880000 0.720000 0.140000 0.100000 0.040000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.920000 0.040000 0.000000 0.020000 0.000000 0.980000 0.000000 0.060000 0.020000 0.920000 0.100000 0.020000 0.860000 0.020000 0.020000 0.900000 0.020000 0.060000 0.000000 0.900000 0.000000 0.100000 0.020000 0.900000 0.000000 0.080000 0.980000 0.000000 0.020000 0.000000 0.060000 0.000000 0.920000 0.020000 0.040000 0.060000 0.900000 0.000000 0.020000 0.900000 0.000000 0.080000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.880000 0.080000 0.040000 0.000000 0.940000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YRCTATGTTGCCCAGGCTGG MEME-9 regular expression -------------------------------------------------------------------------------- [CT][GA]CTATGTTGCCCAGGCTGG -------------------------------------------------------------------------------- Time 7649.97 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 width = 31 sites = 50 llr = 1509 E-value = 4.7e-395 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 Description -------------------------------------------------------------------------------- Simplified A :::9a114a:::::::4::::61::::::8a pos.-specific C a:91::51::98:893198:6::89:998:: probability G :::::9:6::::::::5::::38::::::2: matrix T :a1:::4::a11a217:11a4::11a112:: bits 2.1 1.9 ** * ** * * 1.6 ****** ** * * ** * 1.4 ****** ** *** * * **** * Relative 1.2 ****** ******* *** ******* * Entropy 1.0 ****** ******** ************** (43.5 bits) 0.8 ****** ********* ************** 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel CTCAAGCGATCCTCCTGCCTCAGCCTCCCAA consensus TA CA TG TG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr2:99219362-99219462 + 2 6.90e-17 g ctcaagcaatcctcctgctttagcctcccaa gaatctaaaa chr2:115338451-115338551 + 70 9.14e-17 aactcctcaa ctcaaatgatcctcctgcctcagcctcccaa chr2:42482299-42482399 - 17 2.19e-16 AACTTCTGGC CTCAAGCAATTCTCCTGCCTTGGCCTCCCAA AGTGTTGGGA chr2:128202542-128202642 - 22 3.21e-16 AACTCCTGGG CTCAAGTGATCCTCCCACCTTGGCCTCTCAA AGTGCTGGAA chr1:210470003-210470103 + 54 4.11e-16 aactcctggc ctcaagcaatcctctcaccttggcctcccaa agtgctggga chr2:33813859-33813959 + 61 4.64e-16 aactcctggc ctcaagtgatcctcctcccttggcctcccga gttgctgag chr2:105356394-105356494 - 20 7.56e-16 AACTTCTGGG CTCAAGTGATCTTCCCACCTCAGCCTCTCAA GTAGCTAGGG chr1:245205864-245205964 + 69 9.52e-16 aactcctggc ctcaagcaatcctcccacctcaccctcccaa a chr2:96618002-96618102 - 11 1.19e-15 AACTCCTGGG CTCAAGCAATCCGTCTGCCTCAGCCTCCCAA GTACTGGGAC chr1:227712605-227712705 - 22 1.19e-15 AACTCCTGGC CTCAAGTGATCCTCCCTCCTTGGCCTCCCAA AGTGCTGGGA chr1:45813798-45813898 + 59 1.33e-15 agctcttggc ctcaagcaatccttctgccttggccttccaa aatgttggga chr1:17495896-17495996 + 51 1.48e-15 gactcctgaa ctcaagccatcctcctccctcagcctcctaa agcattgaga chr1:227966034-227966134 - 8 1.65e-15 AACTCTTGGC CTCAAGCAATCCTCCTCTCTTAGCCTCCCAA AGTGCTA chr3:994760-994860 + 5 1.65e-15 tgag ctcaaatgatcctcccacctcagcctcctaa gtagctattt chr2:134790983-134791083 + 52 2.04e-15 aactcctggc ctcaagcaatcctcctgccttggcttctcaa agtgctaaga chr2:230194318-230194418 - 22 2.04e-15 AAATCCTGGC CTCAAGTGATCCTCTTGCCCTAGCCTCCCAA AGTTCTCGGA chr2:43095571-43095671 - 1 2.27e-15 AACTCCTGGC CTCATGTAATCCTCCTGCCTTGGCCTCCCAA chr1:20624960-20625060 - 23 2.54e-15 AACTCCTGGC CTCAAGAGATCCTCCTGCATCAGCCTCCCAA AATGCTGGAA chr1:220347307-220347407 - 7 2.83e-15 TGCTCCTGGG CTAAAGCAATCCTTCTGCCTCAGCCTCCCAA AATTCT chr1:16940753-16940853 + 70 3.50e-15 aactcccaga ctcaagcgatcctcccacctctacctcccaa chr2:127240865-127240965 - 20 4.31e-15 AGCTCTTGAC CTCAAGTGATCCTCCTGCCTTGTTCTCCCAA AGTGCTGGGA chr2:151268150-151268250 + 48 4.31e-15 aactcctggc ctcaagtgatcctcctattttggcctcccaa agtgctggga chr2:171134728-171134828 + 69 4.79e-15 tgaggtggag ctcaagcaatccttccacctaagcctcccaa a chr2:164652406-164652506 + 8 5.30e-15 tcctggg ctccagtgatccttctgcctcagtctcccaa gtagtcaggt chr3:26172990-26173090 + 64 5.30e-15 aactcctggg ctcaagccatcctcctaccttggactcccaa agcact chr1:42885080-42885180 - 18 5.30e-15 AACTCCTGAA CTCCAGTAATCCTCCTGCTTTGGCCTCCCAA AGTACTGGGA chr1:163386572-163386672 + 58 5.30e-15 aattcctgga ctcaagcaattcttccacctcagcctcccga agtgttggga chr2:23982517-23982617 - 25 8.73e-15 AACTCCTGGG CTCAAGCAATCTTCCTCCCTCAGACTCCCAA AGTGCTGGGA chr1:168739505-168739605 - 16 1.06e-14 AACTCCTGAC CTCAAGAGATACTCCTGCCTCAGTCTCCCAA AGTGCTGGGA chr2:74956771-74956871 + 65 1.17e-14 aactcctggg ctcaagcaactctcccacctcagcctcccaa gtagc chr1:31344154-31344254 + 55 1.28e-14 aactcctggt ctcaagtgatactcccaccttggccttccaa agtgctgaga chr1:40024155-40024255 + 6 1.41e-14 ctggg ctcaagtgatcctcttgcttcagtctcctaa gtagcaaaga chr2:28072025-28072125 + 69 1.41e-14 aactcttggc cttaagcgatcttcctgccttggccttccaa a chr1:224185914-224186014 - 30 1.55e-14 CTGAACTGGC CTCAAGCGATCTTCTTGCCTCAGCTTCTCAA AGTGCTCGGA chr2:159025927-159026027 + 1 1.70e-14 . ctcaagcgatcatcttgcctcagcttcccaa tggctaggac chr1:35635273-35635373 + 49 2.48e-14 aactcctggt ctcaagtgatcctcccaccttgtcctcccca attgctggga chr1:51217236-51217336 + 2 2.72e-14 g ctccagcaatcctcctaccctagcctcccga gctgctaggc chr1:45283607-45283707 + 51 3.26e-14 aactcctggc ttcaagcgatcttcccacctcagtctcccaa agttctggga chr2:206666897-206666997 - 12 4.65e-14 AACTCCTGGG CTCAAGTGATCCTCTTGACTCAGCCTTCTAA GTAGCTGTGA chr2:203070359-203070459 + 68 5.08e-14 aactcctggg ctcaagtgattttcttgcctcagcctcctga gt chr2:121822175-121822275 + 4 5.54e-14 ggg ctcaagtgatcctcctgcctcagctccctga gtagccagga chr2:31933167-31933267 - 4 7.81e-14 TAGAACTTGG CTTAAGCAATCCTCCTGCCTCAGCCTCTTCA GTA chr1:199514433-199514533 + 4 7.81e-14 ggg ctcaagtgatcctcctgcttcaacctttcga atagctagta chr1:53269303-53269403 + 3 9.26e-14 gg ctcaagggatcttcctgcctcagtctcctga gtagcttggg chr1:205208591-205208691 - 23 1.79e-13 AACTCATGGC CTCAAACGATCCTTCCAACTCAACCTCCCAA AGTGCTGGAA chr2:214131222-214131322 - 5 1.94e-13 AACTCCTGCT CTCAAGCCATCCTCCCACTTCAACTTCCCGA AGCA chr2:48044681-48044781 - 6 3.12e-13 TACTCCAGGG CTCAAGAGATCCTCCCGGCTCGACCTTCCAA AGTGC chr1:211536312-211536412 - 17 4.24e-13 ATCTCCTGTC CTCAAGCGATCCTCCCATGTCGGCCTCCCAC AGTGCTGGGA chr1:52228885-52228985 + 10 5.32e-13 actcctggg cttaagcgattctcctacctcaacctcttga gtagctgcac chr3:27390823-27390923 + 5 6.18e-13 tggg cccaagcaatccgtctacctcagcctcctga gtagccagca -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:99219362-99219462 6.9e-17 1_[+10]_68 chr2:115338451-115338551 9.1e-17 69_[+10] chr2:42482299-42482399 2.2e-16 16_[-10]_53 chr2:128202542-128202642 3.2e-16 21_[-10]_48 chr1:210470003-210470103 4.1e-16 53_[+10]_16 chr2:33813859-33813959 4.6e-16 60_[+10]_9 chr2:105356394-105356494 7.6e-16 19_[-10]_50 chr1:245205864-245205964 9.5e-16 68_[+10]_1 chr2:96618002-96618102 1.2e-15 10_[-10]_59 chr1:227712605-227712705 1.2e-15 21_[-10]_48 chr1:45813798-45813898 1.3e-15 58_[+10]_11 chr1:17495896-17495996 1.5e-15 50_[+10]_19 chr1:227966034-227966134 1.6e-15 7_[-10]_62 chr3:994760-994860 1.6e-15 4_[+10]_65 chr2:134790983-134791083 2e-15 51_[+10]_18 chr2:230194318-230194418 2e-15 21_[-10]_48 chr2:43095571-43095671 2.3e-15 [-10]_69 chr1:20624960-20625060 2.5e-15 22_[-10]_47 chr1:220347307-220347407 2.8e-15 6_[-10]_63 chr1:16940753-16940853 3.5e-15 69_[+10] chr2:127240865-127240965 4.3e-15 19_[-10]_50 chr2:151268150-151268250 4.3e-15 47_[+10]_22 chr2:171134728-171134828 4.8e-15 68_[+10]_1 chr2:164652406-164652506 5.3e-15 7_[+10]_62 chr3:26172990-26173090 5.3e-15 63_[+10]_6 chr1:42885080-42885180 5.3e-15 17_[-10]_52 chr1:163386572-163386672 5.3e-15 57_[+10]_12 chr2:23982517-23982617 8.7e-15 24_[-10]_45 chr1:168739505-168739605 1.1e-14 15_[-10]_54 chr2:74956771-74956871 1.2e-14 64_[+10]_5 chr1:31344154-31344254 1.3e-14 54_[+10]_15 chr1:40024155-40024255 1.4e-14 5_[+10]_64 chr2:28072025-28072125 1.4e-14 68_[+10]_1 chr1:224185914-224186014 1.6e-14 29_[-10]_40 chr2:159025927-159026027 1.7e-14 [+10]_69 chr1:35635273-35635373 2.5e-14 48_[+10]_21 chr1:51217236-51217336 2.7e-14 1_[+10]_68 chr1:45283607-45283707 3.3e-14 50_[+10]_19 chr2:206666897-206666997 4.7e-14 11_[-10]_58 chr2:203070359-203070459 5.1e-14 67_[+10]_2 chr2:121822175-121822275 5.5e-14 3_[+10]_66 chr2:31933167-31933267 7.8e-14 3_[-10]_66 chr1:199514433-199514533 7.8e-14 3_[+10]_66 chr1:53269303-53269403 9.3e-14 2_[+10]_67 chr1:205208591-205208691 1.8e-13 22_[-10]_47 chr2:214131222-214131322 1.9e-13 4_[-10]_65 chr2:48044681-48044781 3.1e-13 5_[-10]_64 chr1:211536312-211536412 4.2e-13 16_[-10]_53 chr1:52228885-52228985 5.3e-13 9_[+10]_60 chr3:27390823-27390923 6.2e-13 4_[+10]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA width=31 seqs=50 chr2:99219362-99219462 ( 2) CTCAAGCAATCCTCCTGCTTTAGCCTCCCAA 1 chr2:115338451-115338551 ( 70) CTCAAATGATCCTCCTGCCTCAGCCTCCCAA 1 chr2:42482299-42482399 ( 17) CTCAAGCAATTCTCCTGCCTTGGCCTCCCAA 1 chr2:128202542-128202642 ( 22) CTCAAGTGATCCTCCCACCTTGGCCTCTCAA 1 chr1:210470003-210470103 ( 54) CTCAAGCAATCCTCTCACCTTGGCCTCCCAA 1 chr2:33813859-33813959 ( 61) CTCAAGTGATCCTCCTCCCTTGGCCTCCCGA 1 chr2:105356394-105356494 ( 20) CTCAAGTGATCTTCCCACCTCAGCCTCTCAA 1 chr1:245205864-245205964 ( 69) CTCAAGCAATCCTCCCACCTCACCCTCCCAA 1 chr2:96618002-96618102 ( 11) CTCAAGCAATCCGTCTGCCTCAGCCTCCCAA 1 chr1:227712605-227712705 ( 22) CTCAAGTGATCCTCCCTCCTTGGCCTCCCAA 1 chr1:45813798-45813898 ( 59) CTCAAGCAATCCTTCTGCCTTGGCCTTCCAA 1 chr1:17495896-17495996 ( 51) CTCAAGCCATCCTCCTCCCTCAGCCTCCTAA 1 chr1:227966034-227966134 ( 8) CTCAAGCAATCCTCCTCTCTTAGCCTCCCAA 1 chr3:994760-994860 ( 5) CTCAAATGATCCTCCCACCTCAGCCTCCTAA 1 chr2:134790983-134791083 ( 52) CTCAAGCAATCCTCCTGCCTTGGCTTCTCAA 1 chr2:230194318-230194418 ( 22) CTCAAGTGATCCTCTTGCCCTAGCCTCCCAA 1 chr2:43095571-43095671 ( 1) CTCATGTAATCCTCCTGCCTTGGCCTCCCAA 1 chr1:20624960-20625060 ( 23) CTCAAGAGATCCTCCTGCATCAGCCTCCCAA 1 chr1:220347307-220347407 ( 7) CTAAAGCAATCCTTCTGCCTCAGCCTCCCAA 1 chr1:16940753-16940853 ( 70) CTCAAGCGATCCTCCCACCTCTACCTCCCAA 1 chr2:127240865-127240965 ( 20) CTCAAGTGATCCTCCTGCCTTGTTCTCCCAA 1 chr2:151268150-151268250 ( 48) CTCAAGTGATCCTCCTATTTTGGCCTCCCAA 1 chr2:171134728-171134828 ( 69) CTCAAGCAATCCTTCCACCTAAGCCTCCCAA 1 chr2:164652406-164652506 ( 8) CTCCAGTGATCCTTCTGCCTCAGTCTCCCAA 1 chr3:26172990-26173090 ( 64) CTCAAGCCATCCTCCTACCTTGGACTCCCAA 1 chr1:42885080-42885180 ( 18) CTCCAGTAATCCTCCTGCTTTGGCCTCCCAA 1 chr1:163386572-163386672 ( 58) CTCAAGCAATTCTTCCACCTCAGCCTCCCGA 1 chr2:23982517-23982617 ( 25) CTCAAGCAATCTTCCTCCCTCAGACTCCCAA 1 chr1:168739505-168739605 ( 16) CTCAAGAGATACTCCTGCCTCAGTCTCCCAA 1 chr2:74956771-74956871 ( 65) CTCAAGCAACTCTCCCACCTCAGCCTCCCAA 1 chr1:31344154-31344254 ( 55) CTCAAGTGATACTCCCACCTTGGCCTTCCAA 1 chr1:40024155-40024255 ( 6) CTCAAGTGATCCTCTTGCTTCAGTCTCCTAA 1 chr2:28072025-28072125 ( 69) CTTAAGCGATCTTCCTGCCTTGGCCTTCCAA 1 chr1:224185914-224186014 ( 30) CTCAAGCGATCTTCTTGCCTCAGCTTCTCAA 1 chr2:159025927-159026027 ( 1) CTCAAGCGATCATCTTGCCTCAGCTTCCCAA 1 chr1:35635273-35635373 ( 49) CTCAAGTGATCCTCCCACCTTGTCCTCCCCA 1 chr1:51217236-51217336 ( 2) CTCCAGCAATCCTCCTACCCTAGCCTCCCGA 1 chr1:45283607-45283707 ( 51) TTCAAGCGATCTTCCCACCTCAGTCTCCCAA 1 chr2:206666897-206666997 ( 12) CTCAAGTGATCCTCTTGACTCAGCCTTCTAA 1 chr2:203070359-203070459 ( 68) CTCAAGTGATTTTCTTGCCTCAGCCTCCTGA 1 chr2:121822175-121822275 ( 4) CTCAAGTGATCCTCCTGCCTCAGCTCCCTGA 1 chr2:31933167-31933267 ( 4) CTTAAGCAATCCTCCTGCCTCAGCCTCTTCA 1 chr1:199514433-199514533 ( 4) CTCAAGTGATCCTCCTGCTTCAACCTTTCGA 1 chr1:53269303-53269403 ( 3) CTCAAGGGATCTTCCTGCCTCAGTCTCCTGA 1 chr1:205208591-205208691 ( 23) CTCAAACGATCCTTCCAACTCAACCTCCCAA 1 chr2:214131222-214131322 ( 5) CTCAAGCCATCCTCCCACTTCAACTTCCCGA 1 chr2:48044681-48044781 ( 6) CTCAAGAGATCCTCCCGGCTCGACCTTCCAA 1 chr1:211536312-211536412 ( 17) CTCAAGCGATCCTCCCATGTCGGCCTCCCAC 1 chr1:52228885-52228985 ( 10) CTTAAGCGATTCTCCTACCTCAACCTCTTGA 1 chr3:27390823-27390923 ( 5) CCCAAGCAATCCGTCTACCTCAGCCTCCTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 40857 bayes= 9.67267 E= 4.7e-395 -1229 203 -1229 -369 -1229 -358 -1229 192 -369 194 -1229 -211 186 -200 -1229 -1229 192 -1229 -1229 -369 -211 -1229 197 -1229 -211 117 -358 55 47 -200 127 -1229 195 -1229 -1229 -1229 -1229 -358 -1229 192 -270 184 -1229 -138 -369 180 -1229 -89 -1229 -1229 -259 189 -1229 180 -1229 -70 -1229 184 -1229 -89 -1229 50 -1229 135 62 -159 106 -369 -270 187 -358 -211 -369 180 -358 -111 -1229 -259 -1229 189 -369 132 -1229 55 130 -1229 50 -369 -111 -358 177 -270 -270 180 -1229 -111 -1229 190 -1229 -138 -1229 -358 -1229 192 -1229 187 -1229 -111 -1229 184 -1229 -89 -1229 173 -1229 -38 155 -259 -27 -1229 192 -358 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 4.7e-395 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.020000 0.920000 0.000000 0.060000 0.940000 0.060000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 0.060000 0.000000 0.940000 0.000000 0.060000 0.540000 0.020000 0.380000 0.360000 0.060000 0.580000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.040000 0.860000 0.000000 0.100000 0.020000 0.840000 0.000000 0.140000 0.000000 0.000000 0.040000 0.960000 0.000000 0.840000 0.000000 0.160000 0.000000 0.860000 0.000000 0.140000 0.000000 0.340000 0.000000 0.660000 0.400000 0.080000 0.500000 0.020000 0.040000 0.880000 0.020000 0.060000 0.020000 0.840000 0.020000 0.120000 0.000000 0.040000 0.000000 0.960000 0.020000 0.600000 0.000000 0.380000 0.640000 0.000000 0.340000 0.020000 0.120000 0.020000 0.820000 0.040000 0.040000 0.840000 0.000000 0.120000 0.000000 0.900000 0.000000 0.100000 0.000000 0.020000 0.000000 0.980000 0.000000 0.880000 0.000000 0.120000 0.000000 0.860000 0.000000 0.140000 0.000000 0.800000 0.000000 0.200000 0.760000 0.040000 0.200000 0.000000 0.980000 0.020000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCAAGYRATCCTCCYRCCTYRGCCTCCCAA MEME-10 regular expression -------------------------------------------------------------------------------- CTCAAG[CT][GA]ATCCTCC[TC][GA]CCT[CT][AG]GCCTCC[CT][AG]A -------------------------------------------------------------------------------- Time 8371.50 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:19005090-19005190 8.94e-17 33_[-4(8.71e-12)]_4_[+9(2.01e-10)]_\ 12 chr1:224268510-224268610 3.84e-45 11_[+9(1.57e-09)]_15_\ [+10(2.71e-17)]_23 chr2:174367163-174367263 1.13e-18 9_[+6(1.53e-09)]_[-5(3.67e-09)]_33 chr1:158185424-158185524 8.76e-50 5_[+4(9.90e-16)]_24_[+6(3.19e-16)]_\ 9 chr2:26157824-26157924 2.74e-53 28_[-8(2.48e-17)]_4_[-4(3.00e-12)]_\ 6 chr1:747790-747844 2.08e-20 8_[+10(6.57e-11)]_15 chr1:54870069-54870169 1.63e-24 4_[-10(3.22e-17)]_1_[-5(2.94e-10)]_\ 37 chr3:21977536-21977636 1.11e-24 6_[+4(1.06e-05)]_29_[+6(3.10e-13)]_\ 3 chr2:124971210-124971310 1.63e-40 8_[-6(5.49e-15)]_16_[+7(3.84e-10)]_\ 23 chr1:176070683-176070783 2.38e-10 13_[-8(4.77e-06)]_9_[-4(7.58e-11)]_\ 16 chr1:168739505-168739605 2.87e-34 15_[-10(1.06e-14)]_1_[-5(1.17e-08)]_\ 26 chr2:28844957-28845057 5.54e-18 18_[+5(6.32e-11)]_10_[-6(3.53e-08)]_\ 14 chr1:42156391-42156491 2.62e-30 14_[+4(1.15e-08)]_21_[+3(1.44e-12)]_\ 7 chr1:25976139-25976239 1.06e-33 23_[-8(1.79e-13)]_10_[-4(2.72e-10)]_\ 5 chr2:238175115-238175215 5.42e-39 8_[-6(1.88e-16)]_26_[-4(1.89e-10)]_\ 4 chr1:46201229-46201329 1.89e-55 25_[-10(1.24e-17)]_1_[-5(9.80e-15)]_\ 16 chr2:33813859-33813959 1.22e-29 32_[+5(1.04e-13)]_1_[+10(4.64e-16)]_\ 9 chr1:75841192-75841292 1.98e-26 16_[-2(1.37e-07)]_18_[+7(4.66e-12)]_\ 22 chr2:162468854-162468954 1.30e-47 29_[-8(1.21e-17)]_8_[-4(1.97e-09)]_\ 1 chr1:44204695-44204795 2.46e-22 11_[-8(1.26e-16)]_10_[-4(1.99e-11)]_\ 17 chr2:53369242-53369342 4.80e-13 11_[+4(1.20e-06)]_6_[+8(5.47e-14)]_\ 21 chr1:70068716-70068816 8.20e-49 10_[+5(4.99e-13)]_10_[-6(2.52e-16)]_\ 22 chr1:7761882-7761982 3.04e-25 39_[-7(4.66e-12)]_17_[+2(5.65e-13)] chr2:29738954-29739054 1.83e-40 1_[+4(7.97e-10)]_26_[+6(2.19e-11)]_\ 11 chr2:227371364-227371464 3.14e-46 1_[-6(4.93e-17)]_16_[+7(7.03e-12)]_\ 30 chr1:163386572-163386672 5.94e-34 29_[+5(1.84e-09)]_1_[+10(5.30e-15)]_\ 12 chr2:203518564-203518664 1.47e-45 27_[-7(3.12e-10)]_16_[+6(6.01e-15)]_\ 4 chr2:39279673-39279773 1.26e-39 [+4(2.98e-14)]_29_[+6(5.00e-15)]_9 chr1:199514433-199514533 5.35e-34 3_[+10(7.81e-14)]_28_[+7(3.62e-06)]_\ 16 chr2:206666771-206666860 6.53e-16 1_[+6(1.75e-06)]_24_[-9(2.56e-10)]_\ 13 chr2:94247076-94247103 9.18e-01 27 chr1:84839391-84839491 2.50e-55 3_[+4(4.71e-08)]_22_[+6(3.37e-15)]_\ 13 chr3:5261903-5262003 3.88e-61 10_[-6(3.37e-15)]_24_[-4(6.73e-16)]_\ 4 chr1:9619472-9619572 1.53e-23 14_[-10(1.11e-10)]_1_[-5(6.78e-12)]_\ 27 chr1:39013651-39013751 2.20e-08 11_[-5(8.24e-13)]_18_[-9(3.19e-06)]_\ 24 chr2:202832632-202832732 3.34e-21 8_[-10(1.94e-13)]_1_[-5(3.57e-10)]_\ 33 chr1:39863183-39863283 4.05e-38 14_[+4(1.25e-13)]_19_[+6(3.66e-17)]_\ 5 chr2:127323402-127323502 3.89e-11 9_[+4(3.44e-10)]_6_[+8(1.39e-06)]_\ 23 chr1:145990822-145990922 1.37e-05 12_[+9(4.89e-05)]_19_[+5(1.88e-10)]_\ 22 chr2:65220854-65220954 2.35e-16 36_[-7(2.87e-09)]_17_[+2(7.75e-07)]_\ 3 chr1:212551229-212551329 3.09e-44 22_[+5(7.53e-13)]_11_[-6(4.89e-13)]_\ 9 chr1:242024063-242024163 2.29e-32 3_[-6(2.94e-11)]_16_[+7(5.89e-12)]_\ 28 chr1:153699792-153699892 3.64e-16 4_[-9(1.42e-05)]_12_[+5(1.90e-12)]_\ 1_[-1(5.86e-09)]_10 chr1:219786484-219786584 4.95e-31 29_[-7(3.41e-06)]_16_[+6(1.09e-15)]_\ 2 chr2:72879564-72879664 1.42e-20 24_[+7(8.75e-12)]_28_[+9(4.41e-12)]_\ 6 chr2:99219362-99219462 6.66e-43 1_[+10(6.90e-17)]_33_[-4(2.31e-10)]_\ 4 chr2:143035589-143035689 3.25e-22 30_[+5(2.96e-11)]_12_[-6(2.87e-10)] chr2:168801256-168801356 1.09e-18 8_[-8(1.81e-17)]_3_[-4(1.18e-07)]_7_\ [+9(1.26e-07)] chr1:154964493-154964593 9.67e-37 31_[-8(5.47e-14)]_38 chr3:15337638-15337738 1.47e-47 [+4(5.46e-09)]_27_[+6(5.27e-14)]_11 chr2:85856574-85856674 2.69e-27 4_[-6(1.07e-10)]_24_[-4(2.98e-09)]_\ 10 chr1:50507457-50507557 2.73e-39 16_[+4(8.74e-05)]_8_[+6(1.09e-16)]_\ 14 chr2:201025776-201025876 1.13e-34 12_[-10(4.40e-17)]_1_[-5(5.20e-07)]_\ 29 chr2:96774324-96774424 6.89e-06 43_[-9(1.19e-07)]_4_[+4(4.07e-07)]_\ 2 chr1:185797316-185797416 3.44e-32 12_[-6(1.25e-10)]_26_[-4(8.89e-08)] chr2:27686873-27686973 3.86e-13 11_[-2(5.30e-05)]_36_[+5(1.42e-13)]_\ 4 chr1:232842394-232842494 1.39e-46 10_[-6(1.53e-14)]_16_[+7(3.12e-10)]_\ 21 chr1:112837159-112837259 6.37e-07 8_[+9(1.18e-05)]_18_[+5(1.69e-09)]_\ 1_[-1(5.78e-05)] chr2:231646678-231646778 1.91e-10 19_[+9(1.00e-07)]_28_[+5(2.87e-14)]_\ 6 chr1:102176749-102176849 5.73e-26 16_[-6(3.30e-12)]_11_[+7(1.10e-05)]_\ 20 chr2:16929002-16929102 1.38e-21 38_[-7(1.02e-10)]_13_[+3(1.31e-05)] chr2:67750613-67750713 6.71e-11 2_[+1(5.82e-08)]_1_[-5(1.92e-09)]_\ 18_[-9(4.56e-08)]_6 chr2:30169789-30169889 3.71e-27 18_[+5(5.84e-12)]_1_[-1(7.76e-12)]_\ 28 chr1:244995375-244995475 1.61e-32 5_[-6(9.89e-12)]_24_[-4(8.35e-14)]_\ 9 chr1:72776519-72776619 7.12e-44 25_[-3(1.55e-12)]_13_[+7(2.19e-10)]_\ 13 chr1:35067958-35068058 3.30e-25 17_[+5(2.17e-07)]_1_[+10(5.08e-14)]_\ 24 chr1:116196457-116196557 3.85e-50 3_[-7(2.87e-09)]_16_[+6(1.85e-14)]_\ 28 chr2:100120667-100120767 1.52e-08 45_[-4(1.47e-07)]_24 chr2:132834197-132834297 4.71e-07 49_[+5(7.31e-12)]_24 chr2:82582646-82582746 7.11e-42 31_[-6(4.21e-13)]_16_[+7(7.44e-11)] chr2:47638098-47638198 5.57e-35 26_[+1(6.88e-13)]_15_[-9(1.47e-12)]_\ 13 chr1:187664919-187664935 1.00e+00 16 chr1:245842705-245842805 3.77e-25 16_[-3(7.53e-10)]_13_[+7(4.41e-09)]_\ 22 chr2:24978727-24978827 4.49e-18 16_[-9(3.09e-09)]_23_[+1(3.32e-10)]_\ 15 chr2:73197314-73197414 3.94e-03 2_[-7(7.20e-06)]_76 chr2:230731514-230731614 1.11e-37 12_[-3(5.28e-15)]_17_[-4(1.42e-10)]_\ 13 chr1:67738600-67738700 4.13e-20 6_[+4(1.32e-07)]_5_[+8(1.45e-13)]_\ 27 chr2:42585816-42585916 7.72e-06 25_[-5(5.85e-06)]_18_[-9(2.17e-10)]_\ 10 chr1:33200220-33200320 1.92e-04 11_[-5(3.74e-07)]_23_[-9(8.88e-08)]_\ 19 chr2:31847702-31847802 1.08e-13 6_[-4(8.11e-05)]_14_[+3(2.66e-07)]_\ 22 chr1:112586147-112586247 6.35e-40 28_[-7(1.55e-12)]_13_[+3(1.05e-14)]_\ 10 chr2:240129175-240129275 2.61e-26 18_[-8(7.42e-15)]_6_[-4(2.69e-09)]_\ 14 chr1:90698932-90699032 5.94e-08 33_[-4(1.39e-05)]_4_[+9(6.45e-11)]_\ 12 chr2:160676076-160676176 6.23e-24 14_[-8(3.68e-12)]_11_[-4(1.06e-13)]_\ 13 chr1:168739951-168740051 5.63e-07 2_[+1(1.19e-08)]_9_[-5(5.57e-08)]_\ 36 chr2:38725580-38725637 1.02e-57 15_[+6(1.07e-18)]_11 chr2:236121961-236122061 2.37e-22 2_[-6(7.69e-12)]_25_[-4(7.33e-07)]_\ 11 chr2:66106130-66106230 4.82e-16 1_[-9(1.06e-07)]_5_[+4(2.31e-10)]_\ 20_[+2(1.14e-07)]_1 chr2:209803725-209803825 6.92e-16 8_[-6(3.68e-10)]_28_[-4(1.63e-08)]_\ 2 chr1:184654072-184654172 1.74e-20 21_[-7(1.94e-06)]_21_\ [-10(1.42e-11)]_5 chr1:94536317-94536417 1.51e-20 27_[+9(6.45e-11)]_1_[-6(5.84e-09)]_\ 21 chr1:240202502-240202602 1.76e-20 9_[-8(1.59e-17)]_5_[-4(2.21e-07)]_4_\ [+9(2.26e-09)] chr2:216625494-216625594 2.79e-41 6_[-6(4.08e-16)]_30_[-4(1.97e-13)]_\ 2 chr1:164738307-164738407 1.10e-36 7_[-3(1.41e-13)]_27_[-4(4.18e-10)]_\ 8 chr2:172809530-172809630 3.16e-50 13_[-6(3.05e-15)]_25_[-4(6.38e-11)] chr1:155727360-155727460 3.64e-10 15_[-5(2.62e-11)]_17_[-9(1.25e-08)]_\ 21 chr2:229746533-229746633 8.73e-31 3_[-10(9.14e-17)]_15_[-9(1.31e-11)]_\ 31 chr2:43679838-43679938 1.36e-10 24_[+5(4.11e-10)]_11_[-3(1.25e-06)]_\ 11 chr3:17560337-17560437 1.78e-25 28_[-7(4.89e-09)]_13_[+3(2.76e-08)]_\ 10 chr1:202546325-202546425 1.61e-36 7_[+4(6.23e-09)]_24_[+6(3.37e-15)]_\ 7 chr1:74428652-74428752 1.63e-45 30_[-7(5.73e-10)]_16_[+6(4.62e-16)]_\ 1 chr2:23982517-23982617 5.14e-36 24_[-10(8.73e-15)]_1_[-5(2.09e-13)]_\ 17 chr3:5038727-5038827 1.02e-22 11_[+4(8.98e-11)]_9_[+8(2.73e-10)]_\ 18 chr2:70379389-70379489 2.25e-31 18_[-8(2.08e-15)]_4_[-4(3.72e-10)]_\ 16 chr2:31933167-31933267 9.49e-22 8_[+1(5.28e-14)]_41_[-9(7.55e-09)]_\ 5 chr3:14980171-14980271 5.47e-12 10_[-8(7.52e-10)]_16_[-4(4.78e-09)]_\ 12 chr1:178268049-178268149 8.70e-10 20_[+1(6.92e-06)]_14_[-9(6.06e-09)]_\ 20 chr3:27390823-27390923 6.55e-47 4_[+10(6.18e-13)]_25_[+7(2.72e-09)]_\ 18 chr1:11008472-11008572 5.50e-17 7_[-10(1.23e-10)]_15_[-9(6.20e-10)]_\ 27 chr2:170738668-170738768 2.56e-21 6_[+5(3.77e-12)]_32_[+8(2.29e-15)]_\ 4 chr2:74399260-74399360 2.21e-46 6_[-6(9.02e-17)]_29_[-4(1.36e-11)]_\ 3 chr1:35616392-35616492 6.66e-13 34_[+5(5.16e-10)]_16_[-2(3.12e-11)]_\ 1 chr1:65006354-65006454 3.01e-48 22_[-3(3.48e-15)]_13_[+7(6.04e-06)]_\ 16 chr1:83956154-83956254 4.63e-42 56_[-8(9.94e-17)]_13 chr1:42885080-42885180 7.69e-37 17_[-10(5.30e-15)]_1_[-5(4.72e-10)]_\ 24 chr3:27556605-27556705 1.15e-39 6_[+4(5.99e-14)]_27_[+2(1.66e-12)]_\ 14 chr2:196642734-196642834 1.48e-34 14_[-2(2.90e-12)]_18_[+7(1.94e-09)]_\ 24 chr2:61608358-61608458 7.39e-07 32_[-5(1.46e-08)]_18_[-9(8.38e-08)]_\ 3 chr1:32242942-32243042 6.86e-15 13_[+9(1.14e-09)]_15_[-1(9.28e-06)]_\ 26 chr2:186673972-186674072 6.74e-48 6_[-6(1.07e-18)]_15_[+7(7.01e-13)]_\ 26 chr1:150748582-150748682 1.97e-15 36_[+5(4.22e-07)]_1_[+10(3.93e-13)]_\ 5 chr2:102627003-102627103 6.97e-32 30_[+1(7.04e-12)]_1_[-5(8.97e-13)]_\ 16 chr1:178494111-178494211 3.18e-14 68_[+8(1.40e-15)]_1 chr3:26172990-26173090 1.19e-23 35_[+5(8.24e-13)]_1_[+10(5.30e-15)]_\ 6 chr1:51696882-51696982 1.71e-49 16_[-7(1.90e-10)]_16_[+6(8.86e-15)]_\ 15 chr1:109276348-109276448 2.60e-33 20_[+5(1.08e-10)]_1_[+10(1.43e-17)]_\ 21 chr2:214131222-214131322 2.44e-18 4_[-10(1.94e-13)]_1_[-5(3.24e-10)]_\ 37 chr2:111755136-111755236 8.42e-39 9_[+4(4.06e-08)]_22_[+3(4.16e-15)]_\ 11 chr2:203350359-203350459 3.17e-36 26_[+5(8.42e-10)]_11_[-6(1.31e-13)]_\ 5 chr1:223064659-223064759 8.12e-17 12_[+4(3.58e-10)]_24_[+6(1.79e-08)]_\ 2 chr1:114586727-114586827 1.09e-03 32_[+5(1.91e-07)]_41 chr1:215935824-215935924 1.05e-59 14_[-7(2.99e-08)]_16_[+6(1.85e-15)]_\ 17 chr2:37518932-37519032 4.18e-30 6_[-6(6.35e-12)]_16_[+7(5.23e-08)]_\ 25 chr2:23661059-23661159 4.79e-37 4_[+4(1.82e-10)]_5_[+8(1.65e-14)]_\ 29 chr3:15031396-15031496 1.45e-59 5_[-6(1.60e-19)]_28_[-4(5.35e-13)]_\ 5 chr2:101204435-101204535 3.22e-15 27_[-8(2.96e-05)]_4_[-4(1.23e-11)]_\ 7 chr2:135686465-135686565 2.85e-17 4_[+4(3.36e-12)]_4_[+8(2.92e-06)]_\ 30 chr1:19043716-19043816 3.00e-39 9_[+4(1.65e-11)]_24_[+6(3.73e-14)]_\ 5 chr1:101271448-101271548 5.73e-47 13_[+4(3.58e-10)]_5_[+8(3.23e-15)]_\ 20 chr1:244480994-244481094 8.93e-10 2_[-10(3.17e-10)]_1_[-5(1.67e-05)]_\ 39 chr1:238328964-238329064 1.67e-30 11_[+4(2.22e-10)]_26_[+3(9.92e-14)]_\ 5 chr1:41794929-41795014 2.06e-05 28_[+9(6.47e-12)]_37 chr1:245430386-245430486 7.99e-28 8_[+4(2.30e-06)]_6_[+8(2.71e-14)]_\ 24 chr2:198555639-198555739 4.40e-11 23_[+5(1.85e-07)]_11_[-3(1.33e-07)]_\ 12 chr1:210470003-210470103 2.72e-40 25_[+5(1.04e-11)]_1_[+10(4.11e-16)]_\ 16 chr2:99311594-99311672 4.39e-10 25_[-1(1.08e-08)]_27 chr1:92714600-92714700 2.26e-38 7_[-3(9.22e-15)]_21_[-4(3.01e-08)]_\ 14 chr1:217611897-217611997 4.87e-76 2_[+4(2.60e-15)]_24_[+6(2.84e-17)]_\ 12 chr1:227712605-227712705 5.85e-39 21_[-10(1.19e-15)]_15_\ [-9(1.22e-09)]_13 chr1:154235354-154235454 3.73e-25 34_[+5(3.40e-10)]_1_[-1(1.85e-16)]_\ 12 chr2:114045907-114046007 1.27e-32 30_[+5(1.15e-07)]_1_[+10(1.24e-17)]_\ 11 chr1:151317810-151317910 5.79e-45 3_[-6(3.07e-19)]_28_[-4(4.31e-08)]_\ 7 chr2:87309611-87309711 1.25e-20 11_[-3(3.77e-09)]_29_[-4(1.35e-08)]_\ 2 chr2:60865771-60865871 4.91e-53 37_[-6(3.22e-17)]_32 chr1:165755398-165755498 5.07e-19 21_[-7(2.19e-10)]_17_[+6(5.04e-05)]_\ 9 chr1:38241755-38241855 6.91e-41 3_[-6(3.05e-15)]_30_[-4(3.15e-11)]_\ 5 chr1:93496256-93496356 1.96e-12 64_[-1(9.49e-12)]_10 chr1:183119890-183119990 1.05e-29 21_[-7(3.35e-10)]_13_[+3(2.15e-09)]_\ 17 chr2:231966675-231966775 2.41e-40 8_[+9(2.56e-10)]_15_[+10(1.95e-17)]_\ 26 chr2:25425939-25426029 1.68e-36 5_[+3(2.09e-15)]_58 chr1:151948895-151948995 4.55e-14 7_[-6(1.27e-05)]_15_[+7(1.99e-11)]_\ 25 chr2:72537973-72538073 2.46e-28 20_[-8(2.07e-13)]_9_[-4(2.98e-09)]_\ 9 chr1:46569090-46569190 2.06e-18 19_[+5(1.19e-06)]_1_[+10(7.69e-12)]_\ 22 chr1:65321199-65321299 2.74e-37 16_[-3(1.77e-14)]_23_[-4(5.11e-09)]_\ 3 chr2:56775136-56775236 1.82e-28 4_[-6(8.00e-14)]_30_[-4(2.33e-07)]_\ 4 chr2:18137792-18137892 7.99e-26 3_[-6(1.19e-10)]_16_[+7(9.93e-10)]_\ 28 chr2:53488934-53489034 9.20e-11 18_[+6(2.32e-06)]_18_[-9(6.20e-08)]_\ 13 chr1:153663335-153663435 1.46e-53 10_[-6(9.76e-15)]_28_[-4(3.54e-09)] chr1:206077489-206077589 1.53e-14 12_[-5(3.63e-07)]_11_[+4(1.99e-11)]_\ 19 chr2:160784714-160784814 8.53e-32 13_[+4(8.40e-08)]_26_[+3(2.79e-16)]_\ 3 chr1:184139600-184139700 1.75e-15 60_[+8(1.50e-12)]_9 chr2:165430633-165430733 2.25e-35 5_[-6(1.19e-11)]_29_[-4(4.43e-16)]_\ 4 chr1:231868735-231868835 1.05e-14 4_[-10(6.57e-11)]_1_[-5(4.22e-07)]_\ 37 chr2:115338451-115338551 6.82e-20 37_[+5(1.75e-06)]_5_[+10(9.14e-17)] chr1:150835319-150835419 4.18e-20 20_[+4(4.53e-15)]_23_[+2(1.96e-08)]_\ 4 chr2:135701102-135701202 1.36e-20 8_[+4(2.53e-12)]_21_[+8(6.24e-15)]_\ 9 chr1:199893109-199893209 3.46e-62 20_[-7(5.69e-08)]_26_\ [-10(4.79e-15)]_1 chr2:128202542-128202642 8.88e-49 21_[-10(3.21e-16)]_1_[-5(9.80e-15)]_\ 20 chr1:190834848-190834948 1.31e-11 17_[-1(7.25e-06)]_13_[+7(8.51e-07)]_\ 22 chr1:42517087-42517187 2.01e-34 5_[-6(1.68e-15)]_16_[+7(1.49e-07)]_\ 26 chr2:43955188-43955288 5.36e-43 19_[-7(7.88e-12)]_31_[+1(1.39e-11)]_\ 2 chr1:382720-382820 4.46e-57 33_[+8(2.39e-13)]_4_[+1(3.35e-15)]_\ 6 chr1:36013242-36013342 1.13e-20 13_[+9(4.93e-11)]_24_[-6(9.95e-08)]_\ 12 chr1:148687792-148687892 4.11e-52 13_[-7(2.40e-08)]_25_\ [-10(2.27e-15)]_9 chr3:17294231-17294331 4.90e-19 24_[+10(1.06e-10)]_45 chr2:196163756-196163856 5.21e-34 16_[+4(4.31e-11)]_22_[+3(6.97e-15)]_\ 4 chr1:213297637-213297737 2.93e-19 10_[-8(1.14e-18)]_59 chr2:159025927-159026027 7.32e-38 [+10(1.70e-14)]_32_[-4(2.11e-18)]_6 chr1:183314733-183314833 4.53e-19 1_[+2(2.80e-10)]_18_[-5(2.80e-10)]_\ 32 chr2:23861918-23862018 2.69e-14 12_[+4(1.79e-08)]_3_[+8(4.38e-10)]_\ 23 chr2:11607119-11607219 5.97e-47 17_[-3(4.02e-12)]_13_[+7(1.20e-09)]_\ 21 chr1:96727997-96728097 1.43e-44 8_[-3(5.28e-15)]_13_[+7(1.94e-09)]_\ 30 chr2:32434573-32434673 5.91e-15 21_[-7(4.11e-10)]_26_[+6(6.69e-06)] chr1:235231825-235231925 1.19e-31 34_[-7(2.92e-06)]_13_[+3(2.34e-14)]_\ 4 chr2:216074999-216075099 1.20e-29 [+4(3.26e-06)]_31_[-10(1.91e-11)]_7 chr1:111218952-111219052 1.50e-46 4_[-6(5.16e-16)]_28_[-4(6.12e-11)]_\ 6 chr2:151268150-151268250 3.55e-41 19_[+5(1.22e-12)]_1_[+10(4.31e-15)]_\ 22 chr1:192806688-192806788 2.91e-11 34_[+5(3.55e-05)]_1_[+10(2.26e-10)]_\ 7 chr1:116686260-116686360 4.65e-05 13_[+9(8.16e-09)]_18_[+5(2.68e-07)]_\ 22 chr1:177890869-177890969 7.25e-03 40_[-9(5.17e-08)]_40 chr2:152484530-152484630 2.04e-51 9_[-7(1.75e-11)]_7_[+6(4.62e-16)]_\ 31 chr2:97779734-97779834 1.64e-50 8_[+4(1.15e-13)]_9_[+8(4.83e-16)]_\ 21 chr2:50089504-50089604 3.17e-45 30_[-7(7.10e-14)]_16_[+6(4.92e-11)]_\ 1 chr2:127751447-127751547 1.26e-10 16_[-5(8.97e-13)]_18_[-9(9.65e-11)]_\ 19 chr1:59231818-59231918 5.47e-46 34_[+8(1.17e-12)]_4_[+1(4.58e-11)]_\ 5 chr1:231167956-231168056 2.14e-46 10_[-3(2.63e-13)]_24_[-4(2.26e-14)]_\ 8 chr1:31096694-31096794 9.54e-31 26_[+5(2.21e-12)]_11_[-6(1.55e-12)]_\ 5 chr1:167970369-167970469 1.60e-11 17_[-5(5.26e-09)]_11_[+4(1.16e-10)]_\ 14 chr1:52315146-52315246 2.43e-35 12_[+4(3.61e-11)]_4_[+8(1.92e-12)]_\ 22 chr2:128215745-128215845 4.83e-19 23_[-10(5.64e-09)]_14_\ [-9(1.32e-09)]_12 chr2:235472091-235472191 1.15e-34 26_[-7(4.89e-09)]_16_[+6(5.74e-16)]_\ 5 chr2:32579435-32579535 9.95e-48 49_[-10(1.65e-15)]_20 chr2:230194318-230194418 1.35e-33 21_[-10(2.04e-15)]_15_\ [-9(4.76e-11)]_13 chr1:243389021-243389121 1.24e-09 20_[-5(2.45e-09)]_16_[-9(1.08e-10)]_\ 17 chr2:165853262-165853362 2.54e-16 15_[-3(2.55e-10)]_17_[+7(9.05e-06)]_\ 19 chr2:32646973-32647073 2.24e-24 14_[-8(1.67e-13)]_6_[-4(3.05e-07)]_\ 18 chr1:11032040-11032140 4.90e-32 7_[+4(8.16e-08)]_19_[+3(7.24e-13)]_\ 16 chr2:224341781-224341881 6.30e-17 25_[-7(8.82e-10)]_15_[+6(4.37e-06)]_\ 7 chr1:227363300-227363400 1.20e-40 21_[-10(1.95e-17)]_1_[-5(2.87e-14)]_\ 20 chr2:164652406-164652506 8.79e-47 7_[-1(1.66e-11)]_4_[-8(2.39e-10)]_\ 32 chr2:76420653-76420686 1.13e-03 [-9(4.52e-09)]_13 chr1:198326961-198327061 7.44e-09 65_[+8(8.80e-11)]_4 chr3:994760-994860 3.75e-43 4_[+10(1.65e-15)]_4_[-4(1.32e-07)]_\ 4_[+9(4.23e-10)]_6 chr2:206249897-206249997 4.15e-15 3_[-8(2.09e-10)]_12_[-4(2.06e-14)]_\ 23 chr1:155806579-155806679 1.58e-30 24_[-10(3.12e-12)]_1_[-5(1.08e-07)]_\ 17 chr2:86686689-86686789 1.61e-31 18_[-8(1.96e-18)]_2_[-4(1.15e-05)]_\ 18 chr1:28170431-28170531 1.76e-35 33_[-7(3.72e-11)]_13_[+3(1.67e-11)]_\ 5 chr2:15360353-15360453 3.26e-29 20_[-8(4.28e-11)]_8_[-4(1.15e-13)]_\ 10 chr1:35903577-35903652 1.09e-62 24_[+6(3.66e-17)]_20 chr2:33592364-33592464 1.03e-22 5_[-6(1.40e-07)]_16_[+7(8.51e-09)]_\ 26 chr1:44087249-44087349 9.70e-51 6_[-6(1.38e-18)]_[+8(9.00e-05)]_1_\ [-4(7.71e-08)] chr2:201275741-201275841 2.25e-29 21_[+5(1.01e-08)]_1_[+10(7.84e-18)]_\ 20 chr1:45443896-45443996 2.80e-35 9_[+4(1.06e-13)]_5_[+8(7.46e-13)]_\ 24 chr2:196540426-196540526 3.91e-42 18_[-6(1.43e-16)]_16_[+7(6.83e-11)]_\ 13 chr1:22007871-22007971 1.11e-12 57_[+8(1.18e-14)]_12 chr1:230896190-230896290 2.39e-49 8_[+4(1.40e-12)]_26_[+6(9.02e-17)]_\ 4 chr2:47446030-47446130 1.78e-16 25_[-8(1.53e-10)]_8_[-4(2.88e-09)]_\ 5 chr1:39470381-39470481 5.97e-50 19_[-7(4.26e-12)]_15_[+3(1.05e-14)]_\ 17 chr2:61496211-61496311 1.56e-34 15_[-3(3.17e-14)]_21_[-4(3.72e-08)]_\ 6 chr2:96618002-96618102 7.29e-27 10_[-10(1.19e-15)]_1_[-5(2.03e-08)]_\ 31 chr1:208007081-208007181 5.48e-32 38_[+8(2.75e-12)]_3_[+1(2.56e-11)]_\ 2 chr1:15880987-15881087 4.12e-29 6_[-3(1.40e-11)]_22_[-4(1.36e-11)]_\ 14 chr1:155106044-155106144 2.25e-49 9_[-7(9.37e-10)]_13_[+3(6.25e-14)]_\ 29 chr1:27648971-27649071 6.63e-57 11_[-6(4.12e-15)]_24_[-4(6.26e-15)]_\ 3 chr2:170910601-170910701 1.21e-63 26_[-3(1.93e-16)]_13_[+7(1.19e-10)]_\ 12 chr1:28448901-28449001 5.63e-24 10_[-7(4.05e-08)]_30_[+1(2.27e-12)]_\ 12 chr3:11786060-11786109 2.50e-04 28_[+9(3.33e-08)]_1 chr1:78195063-78195163 3.48e-38 5_[-6(9.76e-16)]_27_[-4(3.00e-12)]_\ 6 chr2:172952070-172952170 1.71e-58 2_[+5(3.40e-10)]_31_[-8(1.26e-16)]_\ 9 chr1:161004564-161004664 6.36e-09 4_[+1(2.91e-11)]_1_[-5(3.63e-07)]_\ 18_[-9(6.94e-05)]_4 chr1:190171825-190171925 8.95e-33 37_[-7(2.10e-07)]_3_[+3(5.07e-15)]_\ 11 chr1:25226702-25226802 1.06e-30 11_[+4(6.14e-07)]_21_[+6(3.37e-15)]_\ 6 chr1:235024421-235024521 1.84e-32 2_[+4(7.87e-12)]_33_[+6(6.01e-15)]_\ 3 chr2:27145840-27145940 1.68e-13 25_[+5(1.04e-13)]_25_[-2(2.10e-08)]_\ 1 chr2:15885473-15885573 1.97e-23 5_[-9(1.00e-07)]_4_[+4(1.71e-14)]_4_\ [+8(1.04e-09)]_5 chr1:88774707-88774807 7.34e-42 7_[-6(1.41e-17)]_16_[+7(1.40e-10)]_\ 24 chr3:9545766-9545866 3.46e-17 2_[-10(1.51e-11)]_1_[-5(3.42e-07)]_\ 18_[-9(1.41e-07)]_1 chr2:219607374-219607474 4.63e-72 [+4(1.43e-11)]_25_[+6(1.60e-19)]_13 chr1:194655732-194655832 4.30e-13 24_[-1(1.93e-06)]_21_[+9(4.41e-12)]_\ 9 chr2:28159975-28160075 2.79e-48 30_[-8(6.13e-17)]_4_[-4(2.69e-09)]_\ 4 chr2:171134728-171134828 6.65e-15 68_[+10(4.79e-15)]_1 chr3:15737515-15737615 1.29e-28 6_[-8(1.21e-17)]_5_[-4(5.14e-11)]_4_\ [+9(2.23e-12)]_3 chr2:203446755-203446855 7.54e-24 3_[-3(8.06e-15)]_9_[+7(1.83e-08)]_\ 39 chr2:205974157-205974257 1.26e-48 6_[+8(3.53e-16)]_32_[-5(1.14e-10)]_\ 4 chr1:8596529-8596629 1.22e-20 14_[-8(1.33e-10)]_6_[-4(4.35e-10)]_\ 18 chr1:39586102-39586185 2.55e-16 25_[-9(2.95e-11)]_4_[+4(1.73e-11)]_\ 3 chr2:238178187-238178287 3.98e-23 6_[-6(9.47e-13)]_31_[-4(4.07e-07)]_\ 1 chr2:61524643-61524743 2.58e-27 14_[+4(1.69e-06)]_5_[+8(2.96e-15)]_\ 19 chr2:110653722-110653822 5.00e-30 32_[-7(1.35e-09)]_18_[+2(1.06e-12)]_\ 6 chr1:23427187-23427287 1.06e-42 8_[+4(4.47e-09)]_22_[+6(3.66e-17)]_\ 8 chr1:202033485-202033527 2.46e-05 5_[+4(2.21e-07)]_6 chr1:245205864-245205964 1.83e-29 40_[+5(1.29e-13)]_1_[+10(9.52e-16)]_\ 1 chr2:42482299-42482399 2.24e-31 16_[-10(2.19e-16)]_1_[-5(7.58e-07)]_\ 25 chr1:69990946-69991046 1.15e-41 25_[+6(2.52e-12)]_44 chr2:206798363-206798454 1.17e-07 41_[-9(8.71e-10)]_30 chr1:28401602-28401702 2.47e-35 2_[-1(6.06e-09)]_24_[+7(2.53e-10)]_\ 26 chr1:32255800-32255900 2.88e-13 10_[-9(8.72e-06)]_6_[+5(1.91e-07)]_\ 1_[-1(1.49e-09)]_10 chr2:74956771-74956871 9.60e-23 36_[+5(9.80e-15)]_1_[+10(1.17e-14)]_\ 5 chr2:42540553-42540653 4.60e-69 4_[+4(1.62e-16)]_4_[+8(1.40e-15)]_\ 30 chr1:185635471-185635571 2.19e-36 29_[-8(1.50e-12)]_4_[-4(9.37e-11)]_\ 5 chr2:87917328-87917428 2.37e-19 33_[+5(7.53e-13)]_1_[+10(2.02e-11)]_\ 8 chr2:125434430-125434530 6.46e-22 61_[+6(1.11e-13)]_8 chr1:228265785-228265885 1.64e-53 15_[-7(2.36e-10)]_17_[+6(2.77e-18)]_\ 15 chr1:51103449-51103471 3.26e-02 22 chr1:231245256-231245356 2.90e-23 19_[-8(1.40e-15)]_8_[-4(5.19e-12)]_\ 11 chr2:124303750-124303850 3.13e-28 11_[+4(1.63e-08)]_21_[+3(3.76e-12)]_\ 10 chr1:77824275-77824375 6.48e-23 20_[+4(1.44e-08)]_16_[+3(1.01e-11)]_\ 6 chr1:159038388-159038488 7.41e-29 4_[-3(3.87e-13)]_23_[-4(1.16e-10)]_\ 15 chr1:28275771-28275871 3.20e-21 13_[-10(1.05e-09)]_1_[-5(2.21e-12)]_\ 28 chr1:6927071-6927171 5.03e-06 46_[-4(5.65e-09)]_23 chr1:45813798-45813898 1.02e-39 23_[+9(2.23e-12)]_15_\ [+10(1.33e-15)]_11 chr2:101986879-101986979 2.76e-31 3_[+4(1.26e-10)]_8_[+8(5.19e-12)]_\ 27 chr1:21115705-21115805 1.19e-28 9_[-6(6.42e-16)]_18_[+7(6.83e-11)]_\ 20 chr2:218634957-218635057 9.61e-20 21_[+4(6.84e-19)]_4_[+8(9.93e-05)]_\ 13 chr1:39939305-39939405 1.05e-43 7_[+5(4.20e-06)]_5_[-6(8.86e-15)]_\ 30 chr1:17495896-17495996 4.92e-35 15_[+9(5.13e-10)]_15_\ [+10(1.48e-15)]_19 chr1:232076072-232076172 1.65e-40 1_[-6(3.19e-16)]_16_[+7(8.10e-09)]_\ 30 chr2:172557854-172557954 3.13e-07 7_[+5(7.92e-05)]_9_[+7(1.09e-08)]_\ 35 chr2:164995591-164995691 6.74e-35 9_[+4(3.30e-11)]_24_[+6(6.24e-14)]_\ 5 chr2:126423422-126423522 1.53e-26 16_[+4(9.95e-10)]_17_[+6(1.27e-11)]_\ 5 chr2:202063622-202063722 3.97e-45 24_[+5(2.57e-12)]_1_[+10(1.15e-18)]_\ 17 chr1:18930888-18930988 4.34e-60 27_[-7(7.10e-14)]_16_[+6(1.24e-16)]_\ 4 chr1:247413754-247413854 9.59e-46 [+10(1.06e-14)]_25_[+7(3.72e-11)]_\ 22 chr1:62677848-62677948 3.66e-64 17_[-7(4.26e-12)]_13_[+3(2.68e-15)]_\ 21 chr1:226327209-226327309 3.63e-32 13_[-8(1.54e-15)]_3_[-4(2.15e-08)]_\ 22 chr1:121149552-121149652 1.63e-32 31_[-7(1.39e-08)]_16_[+6(3.49e-11)] chr1:207900996-207901096 1.05e-05 51_[+5(1.63e-12)]_22 chr1:109581981-109582081 1.21e-25 31_[-8(1.28e-15)]_5_[-4(7.95e-13)]_\ 2 chr2:34473277-34473377 1.40e-08 32_[+9(5.17e-08)]_48 chr1:92116857-92116957 3.47e-43 8_[-2(2.75e-13)]_27_[-4(1.97e-13)]_\ 12 chr2:24601214-24601314 1.41e-28 4_[-6(3.02e-10)]_16_[+7(2.51e-08)]_\ 27 chr1:31305605-31305705 2.80e-43 21_[+5(4.47e-13)]_1_[+10(4.62e-12)]_\ 20 chr2:206302034-206302134 8.87e-37 13_[-8(7.97e-14)]_5_[-4(6.94e-15)]_\ 20 chr2:15537495-15537595 1.15e-20 16_[+1(1.19e-10)]_16_[-9(1.34e-08)]_\ 22 chr2:100145283-100145383 1.84e-37 27_[+1(4.57e-14)]_1_[-5(3.77e-12)]_\ 19 chr2:55526433-55526533 6.42e-60 15_[-6(1.98e-17)]_16_[+7(6.31e-09)]_\ 16 chr1:19133668-19133768 2.13e-28 26_[+1(1.85e-16)]_1_[-5(1.62e-10)]_\ 20 chr1:89816018-89816118 6.53e-31 2_[-8(8.32e-05)]_8_[-10(6.35e-18)]_\ 28 chr1:25519019-25519119 3.04e-34 12_[-3(1.81e-13)]_13_[+7(3.35e-10)]_\ 26 chr2:81228474-81228574 1.81e-13 13_[-5(3.92e-10)]_11_[+4(1.16e-10)]_\ 18 chr2:12183711-12183811 3.11e-46 13_[-7(4.87e-13)]_29_[+1(1.46e-15)]_\ 10 chr1:202375574-202375674 1.20e-20 17_[-8(2.44e-12)]_8_[-4(8.28e-10)]_\ 13 chr1:168981497-168981597 3.53e-48 10_[+4(1.48e-09)]_24_[+6(3.42e-18)]_\ 4 chr2:59929054-59929154 7.64e-31 31_[+5(4.30e-10)]_1_[+10(1.94e-13)]_\ 10 chr2:211342063-211342163 5.36e-13 7_[-6(3.09e-07)]_15_[+7(7.01e-08)]_\ 25 chr1:45384437-45384537 2.34e-29 22_[+5(8.24e-13)]_1_[+10(1.44e-10)]_\ 19 chr1:113017941-113018041 7.32e-52 7_[-7(3.72e-11)]_16_[+6(2.75e-15)]_\ 24 chr2:196574975-196575075 1.31e-10 13_[-5(2.39e-12)]_18_[-9(9.65e-11)]_\ 22 chr2:127914088-127914188 4.64e-42 12_[+4(8.25e-11)]_24_[+6(1.09e-15)]_\ 2 chr2:87127247-87127331 2.28e-08 13_[-7(9.88e-09)]_17_[+6(7.62e-06)]_\ 1 chr2:105356394-105356494 5.68e-47 19_[-10(7.56e-16)]_1_[-5(6.29e-12)]_\ 22 chr2:68307910-68308010 3.07e-33 17_[+4(2.18e-11)]_4_[+8(7.42e-15)]_\ 17 chr1:19381584-19381649 3.60e-04 15_[+9(1.58e-10)]_30 chr1:63341265-63341365 5.46e-24 4_[-8(7.85e-16)]_32_[+9(5.56e-05)]_\ 13 chr1:20513204-20513304 1.48e-14 7_[-10(1.47e-12)]_42_[-9(1.16e-08)] chr1:67525165-67525265 3.76e-47 10_[+5(5.64e-11)]_11_[-6(5.74e-16)]_\ 21 chr2:39284899-39284999 1.05e-52 18_[-3(2.88e-13)]_20_[-4(1.82e-10)]_\ 4 chr2:179720782-179720882 1.19e-14 10_[-8(9.22e-11)]_13_[-4(6.38e-11)]_\ 15 chr1:176020968-176021068 4.43e-12 34_[+5(1.63e-12)]_9_[-1(8.57e-11)]_\ 4 chr2:95721285-95721385 1.05e-14 21_[-8(1.28e-15)]_8_[-4(7.71e-08)]_\ 9 chr2:28072025-28072125 5.63e-26 2_[+9(3.84e-10)]_18_[+5(2.19e-11)]_\ 1_[+10(1.41e-14)]_1 chr1:234554702-234554802 1.11e-37 19_[-10(1.19e-16)]_[-5(2.17e-07)]_\ 23 chr2:36607753-36607853 2.24e-26 8_[-10(5.06e-19)]_61 chr2:8919757-8919857 7.71e-35 20_[-8(1.07e-15)]_15_[-4(4.19e-06)]_\ 3 chr1:27778785-27778885 2.54e-37 31_[-8(1.07e-14)]_3_[-4(5.13e-06)]_\ 4 chr2:143036058-143036152 1.14e-15 38_[+5(3.00e-12)]_1_[-1(4.97e-12)]_\ 2 chr2:238869676-238869776 1.66e-63 19_[-7(6.02e-07)]_16_[+6(5.06e-18)]_\ 12 chr1:66287720-66287820 4.02e-58 9_[-7(3.88e-08)]_17_[+6(1.60e-19)]_\ 21 chr1:171349344-171349444 1.79e-58 17_[-7(7.01e-13)]_16_[+6(1.64e-16)]_\ 14 chr1:19555745-19555845 6.38e-41 31_[+5(2.61e-13)]_1_[+10(1.33e-16)]_\ 10 chr2:177749193-177749293 4.29e-09 10_[+9(5.11e-12)]_20_[+5(8.02e-07)]_\ 23 chr1:23852142-23852242 7.63e-55 6_[+4(2.25e-17)]_24_[+6(1.88e-16)]_\ 8 chr1:179128688-179128788 4.52e-34 24_[-8(5.74e-11)]_4_[-4(2.11e-18)]_\ 10 chr1:35352116-35352216 3.09e-47 12_[-10(2.22e-18)]_1_[-5(2.52e-14)]_\ 29 chr2:164801018-164801118 2.94e-20 16_[-10(2.49e-10)]_1_[-5(6.68e-11)]_\ 25 chr1:225576071-225576171 3.02e-49 28_[-10(4.59e-18)]_[-5(1.90e-12)]_\ 14 chr2:129060478-129060578 1.80e-36 29_[-6(9.76e-15)]_17_[+7(4.54e-05)]_\ 1 chr1:61066984-61067074 6.15e-03 41_[-9(1.41e-07)]_29 chr3:7369058-7369158 1.16e-31 53_[-8(7.96e-13)]_16 chr1:18972189-18972289 1.29e-40 24_[-7(1.60e-11)]_16_[+6(4.62e-16)]_\ 7 chr1:211536312-211536412 7.87e-28 16_[-10(4.24e-13)]_15_\ [-9(1.32e-09)]_18 chr2:174555347-174555447 1.99e-52 5_[-6(1.07e-18)]_16_[+7(1.37e-13)]_\ 26 chr2:124645298-124645398 2.91e-36 4_[+4(3.40e-08)]_25_[+6(4.08e-16)]_\ 9 chr1:26679960-26680060 2.91e-17 5_[-2(7.11e-10)]_18_[+7(9.10e-07)]_\ 33 chr1:174276160-174276260 1.04e-23 [-2(7.66e-11)]_25_[+7(1.31e-11)]_31 chr1:227368137-227368237 4.01e-25 8_[-10(6.35e-18)]_61 chr3:13271513-13271613 2.95e-41 3_[+4(1.06e-11)]_4_[+8(8.89e-17)]_\ 31 chr2:203070359-203070459 1.12e-26 1_[+9(2.31e-07)]_18_[+5(8.24e-13)]_\ 1_[+10(5.08e-14)]_2 chr2:86957030-86957130 9.00e-28 35_[-7(4.65e-11)]_18_[+2(2.20e-09)]_\ 3 chr2:199489489-199489541 3.85e-05 2_[-4(1.11e-10)]_19 chr2:138967194-138967294 2.07e-31 7_[-10(5.06e-19)]_1_[-5(6.69e-14)]_\ 34 chr1:53026525-53026625 8.58e-30 12_[+4(2.68e-12)]_5_[+8(1.60e-12)]_\ 21 chr1:53995528-53995628 1.66e-12 19_[+4(2.47e-06)]_9_[+8(8.89e-17)]_\ 10 chr1:45813337-45813437 1.58e-37 31_[+5(5.29e-06)]_11_[-6(1.43e-16)] chr1:219100191-219100291 8.56e-37 10_[+4(8.64e-08)]_4_[+8(3.53e-16)]_\ 24 chr2:91978570-91978670 2.69e-30 [+3(8.61e-05)]_11_[+5(2.15e-14)]_1_\ [-1(1.90e-12)]_8 chr1:61998383-61998483 7.09e-31 25_[+5(3.00e-09)]_11_[-6(1.43e-11)]_\ 6 chr2:97780071-97780087 1.00e+00 16 chr1:61696772-61696872 3.78e-27 32_[+5(2.15e-14)]_1_[+10(1.60e-11)]_\ 9 chr1:87548020-87548120 3.51e-33 22_[+5(3.62e-13)]_1_[+10(1.18e-11)]_\ 19 chr1:220347307-220347407 8.61e-14 6_[-10(2.83e-15)]_63 chr1:68334498-68334598 3.35e-22 9_[-6(3.68e-10)]_10_[+7(1.21e-12)]_\ 28 chr1:33173670-33173770 6.89e-44 8_[+10(2.72e-18)]_23_[+7(1.09e-08)]_\ 16 chr1:60132802-60132902 2.95e-10 2_[-6(4.03e-06)]_17_[-4(5.27e-10)]_\ 19 chr2:179353450-179353550 1.16e-44 26_[-7(7.01e-08)]_16_[+6(2.11e-16)]_\ 5 chr1:230628625-230628725 5.48e-48 [-6(2.11e-16)]_26_[-4(8.25e-11)]_12 chr2:191075837-191075937 7.25e-30 3_[-1(2.64e-13)]_3_[-8(2.19e-10)]_\ 37 chr1:151488559-151488659 6.71e-38 6_[+10(3.80e-12)]_63 chr1:210027241-210027341 1.94e-21 21_[-10(9.37e-09)]_1_[-5(2.78e-11)]_\ 20 chr1:19134114-19134214 2.86e-12 2_[+1(3.60e-08)]_1_[-5(3.47e-05)]_\ 18_[-9(5.11e-12)]_6 chr1:86305052-86305152 4.07e-18 39_[-7(1.31e-11)]_16_[-2(7.73e-05)]_\ 1 chr1:233814960-233815060 3.06e-13 28_[+5(9.73e-13)]_1_[-1(1.31e-05)]_\ 18 chr1:45775952-45776052 1.54e-24 2_[+6(2.94e-11)]_11_[-5(7.07e-11)]_\ 29 chr3:9780856-9780956 3.50e-23 14_[+4(1.28e-14)]_5_[+8(1.28e-10)]_\ 19 chr1:83482696-83482796 1.81e-24 38_[-7(2.08e-05)]_13_[+3(2.34e-14)] chr1:143937505-143937605 2.37e-32 31_[-7(1.39e-08)]_16_[+6(3.49e-11)] chr3:4676059-4676159 8.06e-46 4_[+4(2.53e-12)]_7_[+8(9.72e-16)]_\ 27 chr1:12365901-12366001 8.17e-26 6_[-3(1.10e-08)]_13_[+7(8.61e-11)]_\ 32 chr1:205208591-205208691 1.90e-39 22_[-10(1.79e-13)]_1_[-5(1.41e-12)]_\ 19 chr1:211998041-211998141 3.06e-17 22_[-4(3.00e-12)]_4_[+9(1.05e-06)]_\ 23 chr2:32997228-32997328 1.63e-39 9_[+4(5.06e-15)]_21_[+3(2.42e-13)]_\ 12 chr2:224674469-224674569 1.10e-34 21_[+5(3.77e-12)]_1_[+10(1.34e-11)]_\ 20 chr2:148613519-148613619 5.55e-22 28_[-7(5.69e-08)]_13_[+3(3.72e-08)]_\ 10 chr2:121822175-121822275 3.20e-53 3_[+10(5.54e-14)]_26_[+7(3.40e-11)]_\ 18 chr2:29233131-29233231 2.22e-72 10_[-6(1.60e-19)]_16_[+7(3.59e-10)]_\ 21 chr1:23704925-23705025 8.05e-06 74_[-2(2.30e-07)]_4 chr2:189968255-189968355 1.87e-25 17_[-8(6.99e-13)]_6_[-4(5.28e-09)]_\ 15 chr1:182327174-182327264 4.06e-03 27_[+9(2.69e-06)]_43 chr2:61089904-61090004 1.85e-33 20_[+4(8.12e-17)]_22_[+1(3.39e-12)]_\ 1 chr2:206666897-206666997 8.17e-32 11_[-10(4.65e-14)]_1_[-5(3.53e-11)]_\ 7_[+9(9.75e-05)]_3 chr1:39613138-39613238 1.76e-65 4_[-1(1.46e-15)]_4_[-8(1.01e-10)]_4_\ [-4(1.32e-12)] chr2:107430111-107430195 4.90e-25 18_[-7(1.15e-06)]_13_[+3(2.42e-13)]_\ 4 chr1:99988776-99988876 6.08e-63 20_[-6(7.30e-17)]_16_[+7(1.32e-07)]_\ 11 chr1:44520892-44520992 8.11e-64 18_[-3(1.65e-15)]_22_[-4(7.97e-10)]_\ 2 chr1:51590755-51590855 3.48e-21 32_[+5(2.96e-11)]_1_[-1(1.05e-09)]_\ 14 chr2:20125443-20125543 4.24e-53 6_[+4(6.84e-19)]_24_[+6(4.54e-15)]_\ 8 chr1:76997718-76997818 1.91e-35 [+8(7.10e-07)]_4_[+1(2.45e-11)]_1_\ [-5(1.04e-13)]_11 chr2:43095571-43095671 4.52e-28 [-10(2.27e-15)]_14_[-9(2.26e-09)]_4_\ [+4(8.59e-10)] chr1:35646525-35646625 2.47e-07 43_[-7(8.51e-09)]_35 chr2:37064279-37064379 2.60e-31 21_[+5(2.87e-14)]_1_[+10(4.93e-12)]_\ 20 chr2:149305228-149305328 3.39e-54 30_[-8(3.18e-16)]_4_[-4(7.71e-08)]_\ 4 chr3:11398581-11398681 4.84e-18 18_[+4(5.47e-10)]_3_[+8(5.22e-15)]_\ 17 chr1:220021187-220021287 2.36e-32 9_[-3(5.27e-12)]_31_[-4(5.47e-12)]_\ 2 chr2:86267052-86267125 8.44e-13 4_[+1(3.86e-10)]_1_[-5(5.16e-10)]_\ 15 chr3:3021798-3021898 7.97e-39 15_[-10(2.19e-16)]_1_[-5(2.55e-09)]_\ 26 chr1:239681613-239681713 1.47e-34 32_[-7(2.39e-11)]_13_[+3(4.96e-14)]_\ 6 chr1:45283607-45283707 1.24e-42 22_[+5(1.71e-13)]_1_[+10(3.26e-14)]_\ 19 chr1:233264956-233265056 5.20e-42 29_[-7(7.01e-13)]_16_[+6(1.68e-15)]_\ 2 chr1:82223527-82223627 2.07e-30 9_[-6(2.28e-13)]_16_[+7(3.28e-07)]_\ 22 chr1:185218312-185218412 1.35e-39 4_[-6(3.42e-14)]_25_[-4(1.11e-10)]_\ 9 chr1:70190399-70190499 4.67e-27 2_[+4(3.03e-05)]_18_[+6(1.72e-10)]_\ 18 chr1:241319538-241319638 4.16e-30 29_[+5(3.12e-09)]_1_[-1(2.11e-13)]_\ 17 chr2:197140332-197140432 2.72e-38 6_[-3(4.02e-12)]_13_[+7(4.87e-13)]_\ 32 chr1:8437976-8438076 1.15e-25 4_[-6(2.28e-09)]_20_[+7(5.16e-12)]_\ 23 chr1:240862967-240863067 3.14e-43 8_[+5(2.61e-13)]_19_[-3(2.68e-15)]_\ 19 chr1:118090602-118090702 6.33e-30 15_[+4(1.28e-09)]_7_[+8(5.06e-13)]_\ 16 chr1:3045804-3045904 9.57e-39 22_[-10(1.81e-12)]_15_\ [-9(4.76e-11)]_12 chr2:10678059-10678159 2.91e-29 23_[-8(7.97e-14)]_7_[-4(3.30e-11)]_\ 8 chr1:171484430-171484530 2.11e-10 36_[-4(1.39e-08)]_4_[+9(6.20e-10)]_\ 9 chr3:22094909-22095009 4.54e-28 3_[-3(4.29e-11)]_13_[+7(8.58e-08)]_\ 3_[-4(2.26e-14)]_1 chr1:20624960-20625060 1.49e-41 22_[-10(2.54e-15)]_1_[-5(1.29e-13)]_\ 19 chr1:13477555-13477655 1.46e-43 20_[+4(1.16e-14)]_4_[+8(1.52e-14)]_\ 14 chr2:79772591-79772691 6.55e-15 18_[-6(9.44e-07)]_17_[-4(2.74e-07)]_\ 3 chr2:127363750-127363850 5.95e-20 7_[+7(2.89e-12)]_21_[+9(1.19e-10)]_\ 30 chr1:229691887-229691987 7.77e-36 5_[-6(3.10e-13)]_16_[+7(2.43e-09)]_\ 26 chr3:23430516-23430616 6.05e-35 26_[-8(1.71e-15)]_6_[-4(4.05e-09)]_\ 6 chr2:43725836-43725936 1.29e-47 16_[-7(3.88e-08)]_26_\ [-10(2.38e-12)]_5 chr1:206533473-206533573 1.22e-37 25_[-7(1.75e-08)]_13_[+3(2.63e-13)]_\ 13 chr2:148439737-148439837 2.40e-41 27_[-8(1.54e-15)]_6_[-4(3.58e-10)]_\ 5 chr1:245205700-245205800 1.69e-03 26_[+9(1.82e-09)]_54 chr2:48044681-48044781 5.95e-17 5_[-10(3.12e-13)]_1_[-5(3.69e-08)]_\ 36 chr2:84857872-84857972 3.38e-45 13_[-3(6.72e-16)]_13_[+7(3.88e-08)]_\ 25 chr1:108186305-108186405 2.26e-25 9_[-7(2.86e-08)]_31_[+1(8.86e-16)]_\ 12 chr1:94459027-94459127 2.24e-17 8_[+9(7.45e-08)]_18_[+5(5.47e-09)]_\ 1_[-1(5.00e-11)] chr1:43730558-43730658 5.48e-64 14_[+10(4.40e-17)]_26_\ [+7(2.62e-11)]_7 chr2:87767755-87767855 1.16e-44 25_[-3(6.72e-16)]_12_[+4(2.86e-05)]_\ 5 chr2:130525362-130525462 4.07e-37 17_[-7(3.12e-10)]_13_[+3(5.71e-11)]_\ 21 chr1:9179305-9179405 1.40e-56 21_[-7(4.87e-13)]_18_[+2(2.61e-12)]_\ 17 chr2:25971899-25971999 2.47e-39 18_[+5(2.92e-13)]_1_[+10(3.66e-16)]_\ 23 chr1:238614795-238614895 5.16e-19 23_[+4(3.18e-06)]_13_[+3(1.67e-13)]_\ 6 chr1:31344154-31344254 1.10e-36 26_[+5(2.15e-14)]_1_[+10(1.28e-14)]_\ 15 chr2:27709407-27709507 2.52e-47 17_[-6(1.68e-14)]_16_[+7(1.20e-09)]_\ 14 chr1:50874368-50874468 1.05e-24 23_[-8(3.54e-15)]_4_[-4(6.65e-09)]_\ 11 chr3:22971326-22971426 5.01e-25 17_[-7(3.12e-10)]_22_[+2(5.39e-09)]_\ 17 chr2:148712607-148712707 1.66e-29 5_[+4(2.94e-10)]_24_[+6(2.77e-11)]_\ 9 chr1:39890158-39890258 2.32e-35 33_[+5(8.97e-13)]_1_[+10(1.43e-17)]_\ 8 chr1:62339925-62340025 3.04e-48 26_[-7(9.64e-12)]_13_[+3(6.97e-15)]_\ 12 chr1:42762139-42762239 6.78e-11 23_[-5(1.94e-11)]_18_[-9(1.14e-09)]_\ 12 chr1:146482664-146482764 5.54e-24 16_[+9(1.55e-11)]_15_\ [+10(5.64e-09)]_18 chr2:18299240-18299340 1.85e-39 4_[-6(5.00e-15)]_27_[-4(1.23e-08)]_\ 7 chr2:199834897-199834997 2.56e-41 4_[+4(3.01e-11)]_8_[+8(4.83e-16)]_\ 26 chr1:92704039-92704139 1.96e-28 14_[+4(1.54e-10)]_8_[+8(3.68e-12)]_\ 16 chr1:96452921-96453021 3.34e-46 14_[-7(1.09e-08)]_26_\ [-10(4.94e-13)]_7 chr1:35352328-35352385 4.28e-04 3_[-9(4.28e-08)]_2_[+4(3.42e-05)]_1 chr2:152856942-152857042 1.25e-39 3_[-1(6.70e-09)]_4_[-8(1.85e-08)]_4_\ [-4(4.07e-15)]_1 chr1:229222186-229222286 7.31e-21 5_[-3(4.46e-13)]_20_[+7(5.94e-08)]_\ 26 chr1:218268930-218269030 5.80e-47 5_[-6(1.85e-14)]_24_[-4(6.84e-19)]_\ 9 chr1:52228885-52228985 4.29e-35 9_[+10(5.32e-13)]_12_[+7(2.39e-11)]_\ 26 chr2:238221841-238221941 3.62e-12 14_[+4(1.28e-05)]_[+8(7.52e-10)]_24 chr1:109387342-109387442 2.25e-18 3_[+1(1.85e-16)]_1_[-5(1.85e-07)]_\ 18_[-9(2.00e-08)]_5 chr2:227674192-227674292 1.30e-37 13_[+6(2.66e-13)]_11_[-5(1.41e-12)]_\ 18 chr1:31276287-31276387 1.64e-05 4_[-5(4.51e-10)]_18_[-9(6.32e-05)]_\ 31 chr1:205876803-205876903 4.66e-54 2_[-6(7.30e-17)]_16_[+7(1.21e-12)]_\ 29 chr1:77709226-77709326 1.58e-36 10_[+4(1.36e-11)]_10_[+8(9.72e-16)]_\ 18 chr2:25936206-25936306 3.29e-32 20_[+5(2.92e-13)]_1_[-1(8.51e-10)]_\ 26 chr3:11257690-11257790 4.88e-08 27_[-4(5.28e-09)]_4_[+9(4.86e-08)]_\ 18 chr1:244951448-244951548 3.32e-48 11_[+4(1.20e-10)]_4_[+8(1.17e-15)]_\ 23 chr1:86233388-86233425 9.18e-07 5_[-4(4.35e-10)]_1 chr2:32189596-32189696 6.94e-57 17_[-6(3.60e-16)]_16_[+7(7.10e-14)]_\ 14 chr2:206059921-206060021 3.28e-48 3_[+4(1.33e-06)]_35_[-10(2.72e-14)] chr1:16940753-16940853 1.67e-26 3_[+9(4.65e-10)]_18_[+5(1.62e-10)]_\ 1_[+10(3.50e-15)] chr1:64666606-64666706 3.56e-34 13_[+4(6.37e-10)]_23_[+6(5.16e-16)]_\ 2 chr1:180048787-180048887 2.24e-20 14_[+4(4.66e-12)]_22_[+6(1.31e-07)]_\ 2 chr2:203171324-203171424 1.09e-39 2_[+4(3.45e-11)]_21_[+3(6.42e-12)]_\ 19 chr1:7907365-7907465 2.81e-15 10_[+4(1.19e-09)]_32_[+2(2.37e-10)]_\ 5 chr2:68646779-68646879 3.04e-61 30_[+8(1.93e-13)]_4_[+1(1.85e-16)]_\ 9 chr1:84441636-84441736 3.95e-28 13_[-2(1.66e-12)]_24_[-4(5.69e-07)]_\ 10 chr2:70055796-70055896 3.66e-37 21_[-10(4.11e-16)]_15_\ [-9(2.23e-12)]_13 chr2:196855346-196855409 1.95e-07 4_[-6(1.39e-06)]_28 chr2:203257033-203257128 3.82e-15 38_[+5(5.33e-11)]_1_[-1(1.49e-09)]_\ 3 chr2:218913599-218913699 7.75e-57 11_[-6(3.42e-18)]_16_[+7(1.32e-08)]_\ 20 chr2:208094729-208094829 6.02e-26 23_[+5(4.72e-10)]_1_[+10(3.21e-11)]_\ 18 chr1:180418301-180418401 3.34e-33 7_[+4(2.78e-09)]_5_[+8(6.24e-15)]_\ 26 chr2:73038489-73038589 7.09e-18 6_[-10(1.26e-11)]_1_[-5(1.79e-10)]_\ 35 chr1:162042686-162042786 2.08e-30 9_[+8(7.10e-07)]_4_[+1(3.44e-09)]_1_\ [-5(2.57e-12)]_2 chr1:234560521-234560621 1.30e-34 22_[-2(2.31e-13)]_18_[+7(4.35e-11)]_\ 16 chr1:51217236-51217336 4.53e-28 1_[+10(2.72e-14)]_27_[-4(3.09e-09)]_\ 10 chr1:161236984-161237084 3.26e-49 14_[+5(5.16e-10)]_11_[-6(6.42e-16)]_\ 17 chr2:168487715-168487815 1.32e-18 [-1(8.23e-11)]_38_[-4(8.71e-12)]_5 chr2:146143028-146143128 2.95e-34 31_[-2(6.63e-10)]_18_[+7(2.27e-07)]_\ 7 chr2:54074057-54074157 6.87e-35 8_[+4(9.95e-10)]_8_[+8(4.35e-16)]_\ 22 chr2:38323731-38323817 8.13e-03 11_[+9(8.38e-08)]_55 chr1:220820863-220820963 1.04e-39 6_[-7(6.93e-07)]_13_[+3(3.62e-11)]_\ 32 chr1:182173673-182173773 1.38e-54 21_[-10(5.06e-19)]_1_[-5(1.16e-13)]_\ 20 chr2:172900253-172900353 8.43e-48 20_[-8(4.35e-16)]_4_[-4(4.96e-18)]_\ 14 chr1:245586198-245586298 1.60e-16 44_[+10(4.33e-12)]_25 chr2:179851168-179851268 3.88e-34 22_[-7(1.82e-06)]_13_[+3(4.17e-14)]_\ 16 chr1:237371164-237371264 3.90e-47 22_[-8(1.40e-14)]_4_[-4(1.12e-15)]_\ 12 chr2:150951827-150951927 6.21e-28 11_[+4(5.47e-12)]_27_[+3(5.72e-13)]_\ 4 chr2:151276072-151276172 4.17e-32 14_[-8(3.68e-12)]_5_[-4(1.83e-13)]_\ 19 chr1:184421126-184421226 3.47e-21 7_[-3(5.63e-05)]_31_[-4(1.83e-15)]_\ 4 chr2:238709723-238709823 1.41e-25 31_[+5(3.69e-08)]_11_[-6(1.92e-12)] chr1:70212788-70212888 6.73e-19 13_[-7(8.10e-09)]_13_[+3(3.77e-09)]_\ 25 chr2:134790983-134791083 3.64e-39 23_[+5(1.54e-10)]_1_[+10(2.04e-15)]_\ 18 chr2:9381451-9381551 9.03e-29 14_[+4(2.92e-08)]_24_[+6(6.16e-11)] chr2:126004637-126004737 7.55e-17 27_[-7(3.72e-11)]_51 chr2:3355526-3355626 6.93e-18 18_[+4(2.84e-08)]_7_[+8(3.87e-09)]_\ 13 chr1:151444819-151444919 7.27e-22 4_[+6(1.12e-11)]_18_[-5(4.21e-11)]_\ 20 chr2:127240865-127240965 1.99e-26 19_[-10(4.31e-15)]_1_[-5(1.75e-06)]_\ 22 chr1:58679469-58679569 2.89e-27 7_[-6(3.10e-13)]_24_[-4(5.11e-09)]_\ 7 chr2:9817025-9817125 3.24e-44 1_[-6(1.24e-16)]_16_[+7(3.12e-10)]_\ 30 chr2:154046026-154046126 7.08e-17 13_[+4(2.47e-13)]_21_[+8(3.54e-15)]_\ 4 chr1:53269303-53269403 1.52e-40 2_[+10(9.26e-14)]_[-8(2.99e-06)]_5_\ [-4(2.78e-09)] chr1:1846625-1846725 1.61e-08 33_[-4(6.97e-07)]_4_[+9(8.71e-11)]_\ 12 chr1:173800665-173800765 4.51e-31 8_[+4(6.75e-12)]_13_[+8(2.49e-14)]_\ 17 chr1:234287893-234287993 1.70e-35 23_[-8(1.40e-14)]_3_[-4(1.14e-07)]_\ 12 chr1:228864173-228864273 1.09e-15 37_[-2(1.57e-09)]_[+9(1.58e-05)]_21 chr1:53369587-53369687 3.81e-21 27_[-9(2.23e-12)]_23_[-7(5.37e-10)]_\ 8 chr2:32020216-32020316 8.63e-27 37_[-7(1.75e-08)]_11_[+3(1.27e-14)]_\ 3 chr1:100225863-100225963 1.20e-16 6_[+1(5.23e-10)]_1_[-5(6.75e-10)]_\ 13_[-9(4.10e-06)]_7 chr2:121269478-121269578 2.68e-25 15_[+6(8.19e-12)]_25_[-9(2.81e-06)]_\ 9 chr1:240668373-240668473 1.11e-32 4_[-6(3.53e-12)]_16_[+7(6.97e-09)]_\ 27 chr2:202241231-202241331 1.23e-35 10_[+6(7.61e-13)]_11_[-5(4.47e-13)]_\ 21 chr1:40024155-40024255 5.26e-47 5_[+10(1.41e-14)]_18_[+7(7.10e-14)]_\ 24 chr2:24259935-24260035 9.67e-42 19_[-8(6.15e-13)]_4_[-4(8.12e-17)]_\ 15 chr1:43740504-43740604 8.46e-20 6_[+4(9.82e-14)]_37_[+2(7.66e-11)]_\ 4 chr2:145250671-145250771 2.26e-11 26_[-7(3.79e-07)]_18_[+1(9.28e-06)]_\ 8 chr2:23937262-23937362 8.85e-22 9_[-5(6.85e-13)]_11_[+4(6.38e-11)]_\ 22 chr1:36073760-36073860 3.71e-45 3_[+6(4.07e-18)]_11_[-5(3.32e-07)]_\ 28 chr2:160518234-160518334 1.89e-23 9_[-3(7.33e-09)]_13_[+7(3.28e-07)]_\ 29 chr1:6665072-6665172 8.91e-29 25_[-8(7.96e-13)]_4_[-4(3.36e-12)]_\ 9 chr1:145834857-145834957 1.66e-38 5_[+4(1.16e-12)]_29_[+6(2.05e-12)]_\ 4 chr1:32574322-32574422 2.27e-51 21_[-7(2.90e-11)]_16_[+6(9.89e-12)]_\ 10 chr1:19373673-19373773 6.34e-16 22_[-1(1.90e-11)]_29_[+7(6.19e-08)]_\ 1 chr1:227966034-227966134 3.28e-15 7_[-10(1.65e-15)]_1_[-5(5.39e-05)]_\ 34 chr2:119040932-119041032 4.01e-14 4_[+6(2.43e-08)]_10_[-5(3.92e-10)]_\ 28 chr2:204081364-204081464 7.70e-07 [-4(5.61e-06)]_35_[+5(2.11e-08)]_7 chr2:135083460-135083560 3.32e-31 7_[-6(1.07e-14)]_29_[-4(3.65e-06)]_\ 2 chr2:241333868-241333968 1.36e-09 6_[-8(7.84e-10)]_36_[+2(6.15e-05)]_\ 5 chr1:28483912-28484012 8.53e-28 20_[-10(1.47e-12)]_1_[-5(8.97e-13)]_\ 21 chr3:23718886-23718986 7.98e-48 4_[-6(8.22e-17)]_16_[+7(6.64e-09)]_\ 27 chr1:150587498-150587598 1.26e-08 32_[+9(3.84e-10)]_16_[-8(8.59e-07)]_\ 1 chr2:42377708-42377808 1.31e-32 32_[-7(1.67e-07)]_13_[+6(2.48e-15)]_\ 2 chr2:222950531-222950631 9.55e-10 35_[+7(1.09e-07)]_7_[-4(2.51e-09)]_\ 5 chr2:133822190-133822290 5.84e-48 26_[-7(1.63e-10)]_16_[+6(9.02e-17)]_\ 5 chr1:45789577-45789677 2.85e-61 27_[-8(7.19e-18)]_4_[-4(2.11e-18)]_\ 7 chr1:246415640-246415723 1.17e-64 14_[+10(5.06e-19)]_38 chr1:35635273-35635373 3.52e-38 20_[+5(4.13e-14)]_1_[+10(2.48e-14)]_\ 21 chr1:168263864-168263964 8.32e-45 1_[-6(1.28e-14)]_16_[+7(1.02e-10)]_\ 30 chr1:174336121-174336221 5.94e-43 8_[-6(3.60e-16)]_24_[-4(1.67e-10)]_\ 6 chr1:2346283-2346351 6.16e-21 14_[+1(1.85e-16)]_1_[-5(9.55e-05)] chr2:17678485-17678585 2.42e-50 22_[-7(6.83e-11)]_16_[+6(1.60e-19)]_\ 9 chr2:121729569-121729669 5.16e-18 32_[+5(2.45e-07)]_18_[-2(7.07e-11)]_\ 1 chr1:226052211-226052311 1.57e-47 29_[-7(3.28e-07)]_16_[+6(8.16e-18)]_\ 2 chr1:53777031-53777131 1.65e-16 18_[-8(2.43e-07)]_8_[-4(1.32e-12)]_\ 12 chr2:39496016-39496116 1.44e-07 4_[-8(7.17e-06)]_11_[-4(1.58e-08)]_\ 23 chr1:223831103-223831203 1.11e-27 4_[+4(1.19e-08)]_31_[+6(1.53e-14)]_\ 3 chr1:169901250-169901350 7.21e-30 9_[-1(4.48e-09)]_4_[-8(4.90e-12)]_\ 30 chr1:178187800-178187900 2.36e-21 11_[+5(6.02e-07)]_1_[-1(4.80e-09)]_\ 4_[-8(1.06e-06)] chr1:39772943-39773043 2.09e-05 19_[-5(1.26e-08)]_18_[-9(1.00e-07)]_\ 16 chr1:224185914-224186014 1.32e-22 29_[-10(1.55e-14)]_12_\ [+3(2.14e-05)]_1 chr1:45283143-45283243 1.10e-48 14_[+5(4.47e-13)]_18_[-3(9.27e-17)]_\ 14 chr1:178268678-178268757 1.27e-42 21_[-6(3.37e-15)]_27 chr1:42821729-42821829 3.69e-63 [+4(3.36e-12)]_6_[+8(1.65e-16)]_4_\ [+1(4.94e-14)]_2 chr1:12317598-12317698 2.48e-21 9_[+1(3.05e-14)]_1_[-5(3.40e-10)]_\ 37 chr1:153914651-153914751 3.23e-32 13_[+4(4.96e-18)]_20_[+6(1.63e-10)]_\ 5 chr2:170343157-170343257 1.02e-44 8_[+4(2.11e-18)]_26_[+6(2.42e-14)]_\ 4 chr1:116880117-116880217 3.56e-33 22_[-10(3.59e-11)]_15_\ [-9(3.06e-12)]_12 chr2:152145080-152145180 3.31e-28 14_[-3(4.29e-11)]_13_[+7(5.73e-10)]_\ 24 chr2:148677393-148677493 4.18e-19 24_[-5(7.53e-13)]_11_[+4(6.12e-13)]_\ 7 chr2:32514073-32514173 4.93e-45 7_[-7(1.06e-12)]_31_[+1(4.11e-13)]_\ 14 chr1:248706823-248706923 2.09e-36 6_[+4(4.31e-11)]_31_[+6(7.94e-16)]_\ 1 chr2:186601259-186601359 5.93e-46 27_[-10(6.90e-17)]_[-5(8.80e-10)]_\ 15 chr1:224635719-224635819 1.29e-41 8_[-6(7.94e-16)]_16_[+7(2.74e-08)]_\ 23 chr2:189778937-189779037 4.40e-62 5_[-7(1.82e-05)]_26_[-10(3.21e-16)]_\ 16 chr1:239704919-239705019 1.83e-34 1_[+4(1.36e-10)]_30_[+6(2.82e-16)]_\ 7 chr1:147522905-147523005 9.01e-11 4_[+1(8.23e-11)]_19_[-5(4.48e-09)]_\ 24 chr1:110979405-110979505 8.50e-35 24_[-8(2.50e-15)]_5_[-4(1.89e-10)]_\ 9 chr1:6535999-6536064 2.56e-03 [-9(3.76e-05)]_4_[+4(1.57e-06)]_10 chr2:88297004-88297089 2.19e-38 18_[+6(2.04e-15)]_36 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************