******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 4.12.0 (Release date: Tue Jun 27 16:22:50 2017 -0700) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org . This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org . ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.Alu.MemeChipResults/seqs-sampled ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr1:113728031-113728089 1.0000 58 chr9:96974518-96974556 1.0000 38 chr18:79172467-79172522 1.0000 55 chr7:5202697-5202735 1.0000 38 chr10:124905736-12490579 1.0000 54 chr1:8279803-8279863 1.0000 60 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chr9:107429321-107429358 1.0000 37 chr19_GL949748v2_alt:100 1.0000 19 chr11:73609012-73609041 1.0000 29 chr8:31023505-31023558 1.0000 53 chr17:2329010-2329044 1.0000 34 chrX:133936256-133936296 1.0000 40 chr11:122713711-12271376 1.0000 51 chr13:49613871-49613924 1.0000 53 chr5:60151246-60151308 1.0000 62 chr4:171984870-171984957 1.0000 87 chr2:110548325-110548362 1.0000 37 chr14:20906052-20906097 1.0000 45 chr1:143407483-143407563 1.0000 80 chrX:152931138-152931174 1.0000 36 chr10:69419137-69419169 1.0000 32 chrX:41481018-41481083 1.0000 65 chr17:52938124-52938188 1.0000 64 chr10:96839422-96839465 1.0000 43 chr2:221500001-221500056 1.0000 55 chr19_GL949747v2_alt:403 1.0000 32 chr2:35857080-35857124 1.0000 44 chr1:33465-33509 1.0000 44 chr3:120250083-120250116 1.0000 33 chr2:106419571-106419657 1.0000 86 chr2:32388459-32388506 1.0000 47 chr10:34538090-34538167 1.0000 77 chr19:41857036-41857074 1.0000 38 chr4:136323423-136323513 1.0000 90 chr4:179918844-179918915 1.0000 71 chr8:49676137-49676192 1.0000 55 chr17:17955638-17955692 1.0000 54 chr2:11171409-11171458 1.0000 49 chr8:114324537-114324602 1.0000 65 chr3:11825878-11825920 1.0000 42 chr2_KI270894v1_alt:9900 1.0000 49 chr5:75853576-75853627 1.0000 51 chr22:29164830-29164874 1.0000 44 chr12:104587858-10458789 1.0000 33 chr8:20318718-20318763 1.0000 45 chr4:302777-302835 1.0000 58 chr10:68420727-68420803 1.0000 76 chr7_KI270804v1_alt:9734 1.0000 72 chrX:120631889-120631975 1.0000 86 chr1:34856930-34856966 1.0000 36 chr10:128198806-12819884 1.0000 36 chr20:33114815-33114883 1.0000 68 chr13:105005211-10500528 1.0000 69 chr3:134863380-134863441 1.0000 61 chr1:240443441-240443487 1.0000 46 chr20:1497545-1497583 1.0000 38 chr17:67424052-67424105 1.0000 53 chr12:104985834-10498588 1.0000 50 chr4:41312602-41312668 1.0000 66 chr12:112217984-11221803 1.0000 52 chr19:23406786-23406826 1.0000 40 chr20:5737642-5737720 1.0000 78 chr21:31608062-31608100 1.0000 38 chr20:47173435-47173532 1.0000 97 chr7:56857007-56857047 1.0000 40 chr12:122326349-12232639 1.0000 47 chr6:138874751-138874804 1.0000 53 chr9:137265688-137265729 1.0000 41 chr2:221666333-221666370 1.0000 37 chr6:127631381-127631438 1.0000 57 chr17:65132964-65133030 1.0000 66 chr16:89205755-89205798 1.0000 43 chr12:7689051-7689104 1.0000 53 chr11:31529057-31529130 1.0000 73 chr8:139432147-139432237 1.0000 90 chr7:64118358-64118401 1.0000 43 chr18:42268527-42268581 1.0000 54 chrX:133516505-133516542 1.0000 37 chr19:5369014-5369051 1.0000 37 chr1:215925945-215926032 1.0000 87 chr17:4355292-4355326 1.0000 34 chr17:5692492-5692552 1.0000 60 chr7:68799568-68799644 1.0000 76 chr2_KI270894v1_alt:1018 1.0000 57 chr3:171721760-171721803 1.0000 43 chr16:35600848-35600912 1.0000 64 chrY:18333030-18333070 1.0000 40 chr16:8786240-8786301 1.0000 61 chrY:12310354-12310407 1.0000 53 chr6:17594060-17594099 1.0000 39 chr16:10858431-10858467 1.0000 36 chr3:53052820-53052865 1.0000 45 chrY:21630915-21630953 1.0000 38 chr17:20034488-20034530 1.0000 42 chr3:30636202-30636240 1.0000 38 chr3:52699555-52699638 1.0000 83 chr7:6415400-6415444 1.0000 44 chr9:131113606-131113689 1.0000 83 chr9:87985444-87985480 1.0000 36 chr3:31458885-31458948 1.0000 63 chr10:124876699-12487678 1.0000 88 chr4:184838484-184838527 1.0000 43 chr15:93114066-93114132 1.0000 66 chrX:41700878-41700955 1.0000 77 chr1:155153300-155153346 1.0000 46 chr2:61855354-61855393 1.0000 39 chr10:45870228-45870284 1.0000 56 chr6:103235374-103235447 1.0000 73 chr16:83820513-83820558 1.0000 45 chr10:42402859-42402892 1.0000 33 chr10:97343996-97344029 1.0000 33 chr17:47647145-47647198 1.0000 53 chr2:108724938-108724978 1.0000 40 chr5:154607700-154607783 1.0000 83 chr3:56556520-56556595 1.0000 75 chr1:80798362-80798452 1.0000 90 chr9:70371541-70371605 1.0000 64 chr15:71555098-71555144 1.0000 46 chr20:21376164-21376201 1.0000 37 chr16:47273790-47273890 1.0000 100 chr4_KI270789v1_alt:1767 1.0000 34 chr5:139485233-139485320 1.0000 87 chr19_GL949750v2_alt:101 1.0000 19 chr5:175936997-175937047 1.0000 50 chr11:50258117-50258152 1.0000 35 chr22:17499930-17500000 1.0000 70 chr16:30681382-30681449 1.0000 67 chr2:141149043-141149078 1.0000 35 chrX:134448778-134448878 1.0000 100 chr6_GL000255v2_alt:2052 1.0000 33 chr6:162518970-162519008 1.0000 38 chr7:11232878-11232942 1.0000 64 chr1:26160449-26160498 1.0000 49 chr10:16914589-16914646 1.0000 57 chr2:112950495-112950549 1.0000 54 chr9:33999949-34000000 1.0000 51 chr3:23814088-23814115 1.0000 27 chr11:38980219-38980291 1.0000 72 chr8:140609858-140609895 1.0000 37 chr7:1089368-1089429 1.0000 61 chr1:11050472-11050514 1.0000 42 chr4:138915237-138915279 1.0000 42 chr8:144927988-144928028 1.0000 40 chr3:50845742-50845776 1.0000 34 chr7:30254221-30254267 1.0000 46 chr17:64446107-64446154 1.0000 47 chr12:51882068-51882110 1.0000 42 chr6:30745196-30745259 1.0000 63 chr17:73193926-73193974 1.0000 48 chr5:125641603-125641648 1.0000 45 chr17:6083495-6083540 1.0000 45 chr17:955571-955614 1.0000 43 chr1:178267736-178267776 1.0000 40 chrY:3543628-3543669 1.0000 41 chr19:11068434-11068496 1.0000 62 chr9:21618114-21618189 1.0000 75 chr19:12915165-12915211 1.0000 46 chrX:21979901-21979946 1.0000 45 chr5:148123469-148123514 1.0000 45 chr5:59771381-59771427 1.0000 46 chr5:128405153-128405212 1.0000 59 chr2:24446575-24446651 1.0000 76 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.Alu.MemeChipResults/seqs-sampled -oc /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.Alu.MemeChipResults/meme_out -mod anr -nmotifs 10 -minw 5 -maxw 50 -bfile /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.Alu.MemeChipResults/background -dna -revcomp -nostatus model: mod= anr nmotifs= 10 evt= inf object function= E-value of product of p-values width: minw= 5 maxw= 50 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 50 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 global: substring= yes branching= no wbranch= no em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 32214 N= 600 shuffle= -1 strands: + - sample: seed= 0 ctfrac= -1 maxwords= -1 Letter frequencies in dataset: A 0.244 C 0.256 G 0.256 T 0.244 Background letter frequencies (from /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HumanGenome/Repeats/RepeatNames/Repeat.Alu.MemeChipResults/background): A 0.246 C 0.254 G 0.254 T 0.246 ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTTTTTTGA MEME-1 width = 20 sites = 50 llr = 1313 E-value = 1.7e-355 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::1:::::::::::::2:a pos.-specific C ::1::::::::::::::::: probability G ::::::::::::::::1:a: matrix T aa99aaaaaaaaaaaa98:: bits 2.0 ** *** ** ***** ** 1.8 ** ************ ** 1.6 **************** ** 1.4 ******************** Relative 1.2 ******************** Entropy 1.0 ******************** (37.9 bits) 0.8 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TTTTTTTTTTTTTTTTTTGA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chrY:3543628-3543669 - 20 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr7:11232878-11232942 - 35 6.80e-13 TTTCTTTTTT TTTTTTTTTTTTTTTTTTGA GACGAGTCTT chr3:56556520-56556595 + 1 6.80e-13 . ttttttttttttttttttga gacggagtct chrX:41700878-41700955 - 52 6.80e-13 TTTTTT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr3:53052820-53052865 + 3 6.80e-13 tt ttttttttttttttttttga gacggagtct chr16:35600848-35600912 - 36 6.80e-13 TTTCTTTTT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr7:68799568-68799644 - 52 6.80e-13 TTTTT TTTTTTTTTTTTTTTTTTGA GGAGGAGTCT chr2:221666333-221666370 + 3 6.80e-13 tt ttttttttttttttttttga gacggagtct chr17:67424052-67424105 - 32 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACAGTCTCC chr5:75853576-75853627 - 30 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr1:173676802-173676853 - 31 6.80e-13 T TTTTTTTTTTTTTTTTTTGA GATGGAGTCT chr12:53722917-53722963 - 25 6.80e-13 TC TTTTTTTTTTTTTTTTTTGA GACAGCCTTG chr14:64517782-64517869 + 4 6.80e-13 ttt ttttttttttttttttttga gacagtcttg chr11_KI270903v1_alt:195 - 35 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr6_GL000253v2_alt:3833 + 14 6.80e-13 tttttttttt ttttttttttttttttttga gacggagtct chr20:56104155-56104198 + 2 6.80e-13 t ttttttttttttttttttga gacggagtct chr4:137696076-137696143 - 46 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr12:48102767-48102830 - 42 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr9:94413596-94413677 - 62 6.80e-13 . TTTTTTTTTTTTTTTTTTGA GATGAAGTCT chrY:18923874-18923913 - 18 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr1:212520135-212520180 - 24 6.80e-13 TT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr4:10472999-10473056 - 36 6.80e-13 TC TTTTTTTTTTTTTTTTTTGA GAGGGAGTCT chr1:228198165-228198231 + 1 6.80e-13 . ttttttttttttttttttga gatggagtct chr2:190816065-190816149 + 23 6.80e-13 tttttttttt ttttttttttttttttttga gacggagtct chr10:38214526-38214573 + 3 6.80e-13 tt ttttttttttttttttttga gatgcagtct chr1:225175701-225175782 + 3 6.80e-13 tt ttttttttttttttttttga gatggagtat chr6:38698657-38698701 + 3 6.80e-13 tt ttttttttttttttttttga gacggagtct chr6:65674387-65674477 - 62 6.80e-13 TTTTTTTTT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr17:60699785-60699883 - 76 6.80e-13 TCT TTTTTTTTTTTTTTTTTTGA GACGGAGTCT chr8:69213260-69213324 + 6 6.80e-13 ttttt ttttttttttttttttttga gacggagtct chr8:101185018-101185079 + 5 6.80e-13 tttt ttttttttttttttttttga gacggagtct chr1:69444669-69444758 + 13 6.80e-13 tttttttttt ttttttttttttttttttga gatggagtct chr11:26586355-26586397 + 3 6.80e-13 tt ttttttttttttttttttga gacggagtct chr2:122313535-122313615 - 49 6.80e-13 TTCTTTTTTC TTTTTTTTTTTTTTTTTTGA GACGGAGCCT chr1:143407483-143407563 + 13 1.36e-12 tttttttttt tttttttttttttttttaga tggaatctcc chr13:49613871-49613924 + 4 1.36e-12 ttc tttttttttttttttttaga tggagtcttg chr5:125641603-125641648 - 24 3.44e-12 TT TTCTTTTTTTTTTTTTTTGA GATGGAGTCT chr19:16732623-16732674 - 30 3.44e-12 TT TTCTTTTTTTTTTTTTTTGA GATGAAGTCT chr6:166377140-166377203 + 5 3.44e-12 ttta ttctttttttttttttttga gacagtctcg chr6:127631381-127631438 - 38 5.51e-12 . TTTTTTTTTTTTTTTTGAGA CGGAGTCTCG chr7:44011812-44011883 + 15 5.51e-12 tctttttttc ttttttttttttttttgaga cggagtcttg chr9:136889219-136889262 + 1 5.51e-12 . ttttttttttttttttgaga cggagtctcg chr1:224149272-224149320 + 4 5.51e-12 tct ttttttttttttttttgaga cagtcttgcc chr9:5842392-5842454 - 39 5.51e-12 TTTC TTTTTTTTTTTTTTTTGAGA CAGTCTCGTT chr12:94346386-94346463 - 58 5.51e-12 . TTTTTTTTTTTTTTTTGAGA CGGCGTCTCG chr1:19815527-19815614 + 16 5.51e-12 tttatttaac ttttttttttttttttgaga cggagtctcg chr13:35940257-35940309 - 33 6.19e-12 . TTATTTTTTTTTTTTTTTGA GACGGACTCT chr10:42272689-42272736 - 28 1.52e-11 . TTTATTTATTTTTTTTTTGA GATTGAGTGT chr7:138871988-138872039 + 1 1.52e-11 . tttattttttatttttttga gacggagtct chr12:120428293-12042836 - 50 3.83e-11 TTCTT TTTATTTATTATTTTTTTGA GATGGAGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrY:3543628-3543669 6.8e-13 19_[-1]_2 chr7:11232878-11232942 6.8e-13 34_[-1]_10 chr3:56556520-56556595 6.8e-13 [+1]_55 chrX:41700878-41700955 6.8e-13 51_[-1]_6 chr3:53052820-53052865 6.8e-13 2_[+1]_23 chr16:35600848-35600912 6.8e-13 35_[-1]_9 chr7:68799568-68799644 6.8e-13 51_[-1]_5 chr2:221666333-221666370 6.8e-13 2_[+1]_15 chr17:67424052-67424105 6.8e-13 31_[-1]_2 chr5:75853576-75853627 6.8e-13 29_[-1]_2 chr1:173676802-173676853 6.8e-13 30_[-1]_1 chr12:53722917-53722963 6.8e-13 24_[-1]_2 chr14:64517782-64517869 6.8e-13 3_[+1]_64 chr11_KI270903v1_alt:195 6.8e-13 34_[-1]_2 chr6_GL000253v2_alt:3833 6.8e-13 13_[+1]_35 chr20:56104155-56104198 6.8e-13 1_[+1]_22 chr4:137696076-137696143 6.8e-13 45_[-1]_2 chr12:48102767-48102830 6.8e-13 41_[-1]_2 chr9:94413596-94413677 6.8e-13 61_[-1] chrY:18923874-18923913 6.8e-13 17_[-1]_2 chr1:212520135-212520180 6.8e-13 23_[-1]_2 chr4:10472999-10473056 6.8e-13 35_[-1]_2 chr1:228198165-228198231 6.8e-13 [+1]_46 chr2:190816065-190816149 6.8e-13 22_[+1]_42 chr10:38214526-38214573 6.8e-13 2_[+1]_25 chr1:225175701-225175782 6.8e-13 2_[+1]_59 chr6:38698657-38698701 6.8e-13 2_[+1]_22 chr6:65674387-65674477 6.8e-13 61_[-1]_9 chr17:60699785-60699883 6.8e-13 75_[-1]_3 chr8:69213260-69213324 6.8e-13 5_[+1]_39 chr8:101185018-101185079 6.8e-13 4_[+1]_37 chr1:69444669-69444758 6.8e-13 12_[+1]_57 chr11:26586355-26586397 6.8e-13 2_[+1]_20 chr2:122313535-122313615 6.8e-13 48_[-1]_12 chr1:143407483-143407563 1.4e-12 12_[+1]_48 chr13:49613871-49613924 1.4e-12 3_[+1]_30 chr5:125641603-125641648 3.4e-12 23_[-1]_2 chr19:16732623-16732674 3.4e-12 29_[-1]_2 chr6:166377140-166377203 3.4e-12 4_[+1]_39 chr6:127631381-127631438 5.5e-12 37_[-1] chr7:44011812-44011883 5.5e-12 14_[+1]_37 chr9:136889219-136889262 5.5e-12 [+1]_23 chr1:224149272-224149320 5.5e-12 3_[+1]_25 chr9:5842392-5842454 5.5e-12 38_[-1]_4 chr12:94346386-94346463 5.5e-12 57_[-1] chr1:19815527-19815614 5.5e-12 15_[+1]_52 chr13:35940257-35940309 6.2e-12 32_[-1] chr10:42272689-42272736 1.5e-11 27_[-1] chr7:138871988-138872039 1.5e-11 [+1]_31 chr12:120428293-12042836 3.8e-11 49_[-1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTTTTTTGA width=20 seqs=50 chrY:3543628-3543669 ( 20) TTTTTTTTTTTTTTTTTTGA 1 chr7:11232878-11232942 ( 35) TTTTTTTTTTTTTTTTTTGA 1 chr3:56556520-56556595 ( 1) TTTTTTTTTTTTTTTTTTGA 1 chrX:41700878-41700955 ( 52) TTTTTTTTTTTTTTTTTTGA 1 chr3:53052820-53052865 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr16:35600848-35600912 ( 36) TTTTTTTTTTTTTTTTTTGA 1 chr7:68799568-68799644 ( 52) TTTTTTTTTTTTTTTTTTGA 1 chr2:221666333-221666370 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr17:67424052-67424105 ( 32) TTTTTTTTTTTTTTTTTTGA 1 chr5:75853576-75853627 ( 30) TTTTTTTTTTTTTTTTTTGA 1 chr1:173676802-173676853 ( 31) TTTTTTTTTTTTTTTTTTGA 1 chr12:53722917-53722963 ( 25) TTTTTTTTTTTTTTTTTTGA 1 chr14:64517782-64517869 ( 4) TTTTTTTTTTTTTTTTTTGA 1 chr11_KI270903v1_alt:195 ( 35) TTTTTTTTTTTTTTTTTTGA 1 chr6_GL000253v2_alt:3833 ( 14) TTTTTTTTTTTTTTTTTTGA 1 chr20:56104155-56104198 ( 2) TTTTTTTTTTTTTTTTTTGA 1 chr4:137696076-137696143 ( 46) TTTTTTTTTTTTTTTTTTGA 1 chr12:48102767-48102830 ( 42) TTTTTTTTTTTTTTTTTTGA 1 chr9:94413596-94413677 ( 62) TTTTTTTTTTTTTTTTTTGA 1 chrY:18923874-18923913 ( 18) TTTTTTTTTTTTTTTTTTGA 1 chr1:212520135-212520180 ( 24) TTTTTTTTTTTTTTTTTTGA 1 chr4:10472999-10473056 ( 36) TTTTTTTTTTTTTTTTTTGA 1 chr1:228198165-228198231 ( 1) TTTTTTTTTTTTTTTTTTGA 1 chr2:190816065-190816149 ( 23) TTTTTTTTTTTTTTTTTTGA 1 chr10:38214526-38214573 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr1:225175701-225175782 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr6:38698657-38698701 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr6:65674387-65674477 ( 62) TTTTTTTTTTTTTTTTTTGA 1 chr17:60699785-60699883 ( 76) TTTTTTTTTTTTTTTTTTGA 1 chr8:69213260-69213324 ( 6) TTTTTTTTTTTTTTTTTTGA 1 chr8:101185018-101185079 ( 5) TTTTTTTTTTTTTTTTTTGA 1 chr1:69444669-69444758 ( 13) TTTTTTTTTTTTTTTTTTGA 1 chr11:26586355-26586397 ( 3) TTTTTTTTTTTTTTTTTTGA 1 chr2:122313535-122313615 ( 49) TTTTTTTTTTTTTTTTTTGA 1 chr1:143407483-143407563 ( 13) TTTTTTTTTTTTTTTTTAGA 1 chr13:49613871-49613924 ( 4) TTTTTTTTTTTTTTTTTAGA 1 chr5:125641603-125641648 ( 24) TTCTTTTTTTTTTTTTTTGA 1 chr19:16732623-16732674 ( 30) TTCTTTTTTTTTTTTTTTGA 1 chr6:166377140-166377203 ( 5) TTCTTTTTTTTTTTTTTTGA 1 chr6:127631381-127631438 ( 38) TTTTTTTTTTTTTTTTGAGA 1 chr7:44011812-44011883 ( 15) TTTTTTTTTTTTTTTTGAGA 1 chr9:136889219-136889262 ( 1) TTTTTTTTTTTTTTTTGAGA 1 chr1:224149272-224149320 ( 4) TTTTTTTTTTTTTTTTGAGA 1 chr9:5842392-5842454 ( 39) TTTTTTTTTTTTTTTTGAGA 1 chr12:94346386-94346463 ( 58) TTTTTTTTTTTTTTTTGAGA 1 chr1:19815527-19815614 ( 16) TTTTTTTTTTTTTTTTGAGA 1 chr13:35940257-35940309 ( 33) TTATTTTTTTTTTTTTTTGA 1 chr10:42272689-42272736 ( 28) TTTATTTATTTTTTTTTTGA 1 chr7:138871988-138872039 ( 1) TTTATTTTTTATTTTTTTGA 1 chr12:120428293-12042836 ( 50) TTTATTTATTATTTTTTTGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 20814 bayes= 10.8084 E= 1.7e-355 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -362 -208 -1229 190 -203 -1229 -1229 193 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -262 -1229 -1229 196 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -262 -1229 -1229 196 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -86 181 -45 -1229 -1229 174 -1229 -1229 198 -1229 202 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 50 E= 1.7e-355 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.020000 0.060000 0.000000 0.920000 0.060000 0.000000 0.000000 0.940000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.000000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.000000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.140000 0.860000 0.180000 0.000000 0.000000 0.820000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTGA MEME-1 regular expression -------------------------------------------------------------------------------- TTTTTTTTTTTTTTTTTTGA -------------------------------------------------------------------------------- Time 248.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CTCCCAAAGTGCTGGGATTACA MEME-2 width = 22 sites = 50 llr = 1479 E-value = 1.9e-423 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::aaa:::::1::a::a:a pos.-specific C a:aaa::::::a::::::::9: probability G ::::::::a:a::9aa:::::: matrix T :a:::::::a::a::::aa:1: bits 2.0 ********** * ***** * 1.8 ************* ****** * 1.6 ********************** 1.4 ********************** Relative 1.2 ********************** Entropy 1.0 ********************** (42.7 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CTCCCAAAGTGCTGGGATTACA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr17:73193926-73193974 + 4 5.67e-14 ggt ctcccaaagtgctgggattaca gtcatgagcc chr6:30745196-30745259 + 19 5.67e-14 ccgcctcggc ctcccaaagtgctgggattaca ggcgtgagcc chrX:134448778-134448878 - 8 5.67e-14 CCGCCTCGGC CTCCCAAAGTGCTGGGATTACA CGCGTGA chr5:175936997-175937047 + 7 5.67e-14 ctcagc ctcccaaagtgctgggattaca ggcatgagcc chr5:139485233-139485320 - 24 5.67e-14 CCGCCTCAGC CTCCCAAAGTGCTGGGATTACA GGCATGAGCC chr4:302777-302835 - 21 5.67e-14 CCACCTCGGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr2:106419571-106419657 - 23 5.67e-14 CCGCCTCGGC CTCCCAAAGTGCTGGGATTACA GGCATGAGCC chr2:221500001-221500056 + 11 5.67e-14 ccacctcagc ctcccaaagtgctgggattaca ggcgtgagcc chr4:171984870-171984957 - 24 5.67e-14 CTGCCTCGAC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr14:39152963-39152996 - 8 5.67e-14 CAGC CTCCCAAAGTGCTGGGATTACA GACGTGA chr9:94650427-94650485 - 24 5.67e-14 CACCTTGGCC CTCCCAAAGTGCTGGGATTACA GGAGTGTGCC chr8:81920262-81920306 + 1 5.67e-14 . ctcccaaagtgctgggattaca ggtgtgagcc chr7:66581158-66581213 + 11 5.67e-14 ccacctcaga ctcccaaagtgctgggattaca ggcatgagac chr1:149088736-149088800 - 24 5.67e-14 CTGCCTCAGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr5:177906713-177906763 - 23 5.67e-14 CTCAGC CTCCCAAAGTGCTGGGATTACA GGTATGAGCC chr7:99496308-99496354 + 3 5.67e-14 gt ctcccaaagtgctgggattaca ggtatgagcc chrY:3390565-3390610 + 1 5.67e-14 . ctcccaaagtgctgggattaca ggtgtgagcc chrX:23665619-23665670 - 11 5.67e-14 CCACCTTGGC CTCCCAAAGTGCTGGGATTACA GGCATGAGCC chr6:147907232-147907271 - 16 5.67e-14 GC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr13:41987103-41987165 + 18 5.67e-14 ccaccttggc ctcccaaagtgctgggattaca ggtgtgagcc chr22:39699259-39699320 + 17 5.67e-14 ccgccttagc ctcccaaagtgctgggattaca ggtgtgagcc chr3:148046351-148046430 - 18 5.67e-14 CCACTGCAGC CTCCCAAAGTGCTGGGATTACA GGTGTGAGCC chr17:18739045-18739092 - 24 5.67e-14 GC CTCCCAAAGTGCTGGGATTACA GGCATGAGCC chr10:36673517-36673557 - 3 5.67e-14 CTTCGTTAGC CTCCCAAAGTGCTGGGATTACA GG chr16:73788885-73788934 + 16 5.67e-14 ccaccttggc ctcccaaagtgctgggattaca ggtgtgagcc chr15:76104536-76104619 - 24 5.67e-14 CCGCCTCGGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr17:67510546-67510601 + 11 5.67e-14 ccgcctcggc ctcccaaagtgctgggattaca ggcgtgagcc chr22:43089863-43089956 - 24 5.67e-14 CCGCCTCTGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr2:166033429-166033493 - 24 5.67e-14 CCACCTCAGC CTCCCAAAGTGCTGGGATTACA GGTGTGAGCT chr15:57021373-57021446 - 21 5.67e-14 CCTCCTGGGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr6:77444481-77444527 + 2 5.67e-14 c ctcccaaagtgctgggattaca ggtgtgagcc chr4:128104035-128104102 + 23 5.67e-14 ctgcctcagc ctcccaaagtgctgggattaca ggtgtgagcc chr1:23136224-23136285 - 24 5.67e-14 CCGCCTCAGC CTCCCAAAGTGCTGGGATTACA GGTGTGAGCC chr22_KI270876v1_alt:107 + 7 5.67e-14 ctaggc ctcccaaagtgctgggattaca ggcgtgagcc chr8:30747816-30747867 - 24 5.67e-14 CTTGGC CTCCCAAAGTGCTGGGATTACA GGCATGAGCC chr5:7958864-7958905 + 3 5.67e-14 gc ctcccaaagtgctgggattaca ggcatgagcc chr6:13280736-13280793 - 24 5.67e-14 CCGCCTCGGC CTCCCAAAGTGCTGGGATTACA GGCGTGAGCC chr16:23634709-23634761 + 8 5.67e-14 cctcagc ctcccaaagtgctgggattaca gacgtaagcc chr19_GL949746v1_alt:803 + 39 5.67e-14 acacctcggc ctcccaaagtgctgggattaca ggcatgaccc chr9:21618114-21618189 - 14 1.66e-13 CCGCCTCGGC CTCCCAAAGTGCTAGGATTACA GCAGTGAGCC chr19:11068434-11068496 - 24 1.66e-13 CCAACTCGGC CTCCCAAAGTGCTAGGATTACA GGCATGAGCC chr3:65566820-65566896 + 32 1.66e-13 ccgcctgggc ctcccaaagtgctgggattata ggcatgagcc chr8:5285914-5285964 - 24 1.66e-13 TTGGC CTCCCAAAGTGCTAGGATTACA GGCATGAGCC chr11:107916376-10791641 - 14 1.66e-13 CCTCGGC CTCCCAAAGTGCTGGGATTATA GGTGTGAACC chr4:62515052-62515099 + 4 1.66e-13 ggc ctcccaaagtgctgggattata ggcgtgagcc chr1:10405474-10405539 + 21 2.21e-13 ttgccctggc ctcccaaagtactgggattaca ggcgtgagcc chr14:22991245-22991299 - 23 2.21e-13 CTGCCTTGGC CTCCCAAAGTACTGGGATTACA GGCATGAGCC chrX:53445665-53445715 + 6 3.31e-13 ttggc ctcccaaagtgctgagattaca ggcgtaagcc chr7:14379888-14379933 + 1 3.31e-13 . ctcccaaagtgttgggattaca ggcgtgagcg chr8:76905205-76905254 - 22 3.84e-13 CTTGGC CTCCCAAAGTGCTAGGATTATA GACATGAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr17:73193926-73193974 5.7e-14 3_[+2]_23 chr6:30745196-30745259 5.7e-14 18_[+2]_23 chrX:134448778-134448878 5.7e-14 7_[-2]_71 chr5:175936997-175937047 5.7e-14 6_[+2]_22 chr5:139485233-139485320 5.7e-14 23_[-2]_42 chr4:302777-302835 5.7e-14 20_[-2]_16 chr2:106419571-106419657 5.7e-14 22_[-2]_42 chr2:221500001-221500056 5.7e-14 10_[+2]_23 chr4:171984870-171984957 5.7e-14 23_[-2]_42 chr14:39152963-39152996 5.7e-14 7_[-2]_4 chr9:94650427-94650485 5.7e-14 23_[-2]_13 chr8:81920262-81920306 5.7e-14 [+2]_22 chr7:66581158-66581213 5.7e-14 10_[+2]_23 chr1:149088736-149088800 5.7e-14 23_[-2]_19 chr5:177906713-177906763 5.7e-14 22_[-2]_6 chr7:99496308-99496354 5.7e-14 2_[+2]_22 chrY:3390565-3390610 5.7e-14 [+2]_23 chrX:23665619-23665670 5.7e-14 10_[-2]_19 chr6:147907232-147907271 5.7e-14 15_[-2]_2 chr13:41987103-41987165 5.7e-14 17_[+2]_23 chr22:39699259-39699320 5.7e-14 16_[+2]_23 chr3:148046351-148046430 5.7e-14 17_[-2]_40 chr17:18739045-18739092 5.7e-14 23_[-2]_2 chr10:36673517-36673557 5.7e-14 2_[-2]_16 chr16:73788885-73788934 5.7e-14 15_[+2]_12 chr15:76104536-76104619 5.7e-14 23_[-2]_38 chr17:67510546-67510601 5.7e-14 10_[+2]_23 chr22:43089863-43089956 5.7e-14 23_[-2]_48 chr2:166033429-166033493 5.7e-14 23_[-2]_19 chr15:57021373-57021446 5.7e-14 20_[-2]_31 chr6:77444481-77444527 5.7e-14 1_[+2]_23 chr4:128104035-128104102 5.7e-14 22_[+2]_23 chr1:23136224-23136285 5.7e-14 23_[-2]_16 chr22_KI270876v1_alt:107 5.7e-14 6_[+2]_23 chr8:30747816-30747867 5.7e-14 23_[-2]_6 chr5:7958864-7958905 5.7e-14 2_[+2]_17 chr6:13280736-13280793 5.7e-14 23_[-2]_12 chr16:23634709-23634761 5.7e-14 7_[+2]_23 chr19_GL949746v1_alt:803 5.7e-14 38_[+2]_23 chr9:21618114-21618189 1.7e-13 13_[-2]_40 chr19:11068434-11068496 1.7e-13 23_[-2]_17 chr3:65566820-65566896 1.7e-13 31_[+2]_23 chr8:5285914-5285964 1.7e-13 23_[-2]_5 chr11:107916376-10791641 1.7e-13 13_[-2]_7 chr4:62515052-62515099 1.7e-13 3_[+2]_22 chr1:10405474-10405539 2.2e-13 20_[+2]_23 chr14:22991245-22991299 2.2e-13 22_[-2]_10 chrX:53445665-53445715 3.3e-13 5_[+2]_23 chr7:14379888-14379933 3.3e-13 [+2]_23 chr8:76905205-76905254 3.8e-13 21_[-2]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTCCCAAAGTGCTGGGATTACA width=22 seqs=50 chr17:73193926-73193974 ( 4) CTCCCAAAGTGCTGGGATTACA 1 chr6:30745196-30745259 ( 19) CTCCCAAAGTGCTGGGATTACA 1 chrX:134448778-134448878 ( 8) CTCCCAAAGTGCTGGGATTACA 1 chr5:175936997-175937047 ( 7) CTCCCAAAGTGCTGGGATTACA 1 chr5:139485233-139485320 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr4:302777-302835 ( 21) CTCCCAAAGTGCTGGGATTACA 1 chr2:106419571-106419657 ( 23) CTCCCAAAGTGCTGGGATTACA 1 chr2:221500001-221500056 ( 11) CTCCCAAAGTGCTGGGATTACA 1 chr4:171984870-171984957 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr14:39152963-39152996 ( 8) CTCCCAAAGTGCTGGGATTACA 1 chr9:94650427-94650485 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr8:81920262-81920306 ( 1) CTCCCAAAGTGCTGGGATTACA 1 chr7:66581158-66581213 ( 11) CTCCCAAAGTGCTGGGATTACA 1 chr1:149088736-149088800 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr5:177906713-177906763 ( 23) CTCCCAAAGTGCTGGGATTACA 1 chr7:99496308-99496354 ( 3) CTCCCAAAGTGCTGGGATTACA 1 chrY:3390565-3390610 ( 1) CTCCCAAAGTGCTGGGATTACA 1 chrX:23665619-23665670 ( 11) CTCCCAAAGTGCTGGGATTACA 1 chr6:147907232-147907271 ( 16) CTCCCAAAGTGCTGGGATTACA 1 chr13:41987103-41987165 ( 18) CTCCCAAAGTGCTGGGATTACA 1 chr22:39699259-39699320 ( 17) CTCCCAAAGTGCTGGGATTACA 1 chr3:148046351-148046430 ( 18) CTCCCAAAGTGCTGGGATTACA 1 chr17:18739045-18739092 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr10:36673517-36673557 ( 3) CTCCCAAAGTGCTGGGATTACA 1 chr16:73788885-73788934 ( 16) CTCCCAAAGTGCTGGGATTACA 1 chr15:76104536-76104619 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr17:67510546-67510601 ( 11) CTCCCAAAGTGCTGGGATTACA 1 chr22:43089863-43089956 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr2:166033429-166033493 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr15:57021373-57021446 ( 21) CTCCCAAAGTGCTGGGATTACA 1 chr6:77444481-77444527 ( 2) CTCCCAAAGTGCTGGGATTACA 1 chr4:128104035-128104102 ( 23) CTCCCAAAGTGCTGGGATTACA 1 chr1:23136224-23136285 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr22_KI270876v1_alt:107 ( 7) CTCCCAAAGTGCTGGGATTACA 1 chr8:30747816-30747867 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr5:7958864-7958905 ( 3) CTCCCAAAGTGCTGGGATTACA 1 chr6:13280736-13280793 ( 24) CTCCCAAAGTGCTGGGATTACA 1 chr16:23634709-23634761 ( 8) CTCCCAAAGTGCTGGGATTACA 1 chr19_GL949746v1_alt:803 ( 39) CTCCCAAAGTGCTGGGATTACA 1 chr9:21618114-21618189 ( 14) CTCCCAAAGTGCTAGGATTACA 1 chr19:11068434-11068496 ( 24) CTCCCAAAGTGCTAGGATTACA 1 chr3:65566820-65566896 ( 32) CTCCCAAAGTGCTGGGATTATA 1 chr8:5285914-5285964 ( 24) CTCCCAAAGTGCTAGGATTACA 1 chr11:107916376-10791641 ( 14) CTCCCAAAGTGCTGGGATTATA 1 chr4:62515052-62515099 ( 4) CTCCCAAAGTGCTGGGATTATA 1 chr1:10405474-10405539 ( 21) CTCCCAAAGTACTGGGATTACA 1 chr14:22991245-22991299 ( 23) CTCCCAAAGTACTGGGATTACA 1 chrX:53445665-53445715 ( 6) CTCCCAAAGTGCTGAGATTACA 1 chr7:14379888-14379933 ( 1) CTCCCAAAGTGTTGGGATTACA 1 chr8:76905205-76905254 ( 22) CTCCCAAAGTGCTAGGATTATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 19614 bayes= 9.10317 E= 1.9e-423 -1229 198 -1229 -1229 -1229 -1229 -1229 202 -1229 198 -1229 -1229 -1229 198 -1229 -1229 -1229 198 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 202 -1229 -1229 -1229 -1229 -1229 198 -1229 -1229 -1229 -1229 202 -262 -1229 192 -1229 -1229 195 -1229 -362 -1229 -1229 -1229 202 -162 -1229 186 -1229 -362 -1229 195 -1229 -1229 -1229 198 -1229 202 -1229 -1229 -1229 -1229 -1229 -1229 202 -1229 -1229 -1229 202 202 -1229 -1229 -1229 -1229 186 -1229 -162 202 -1229 -1229 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 1.9e-423 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.960000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.080000 0.000000 0.920000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.920000 0.000000 0.080000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTCCCAAAGTGCTGGGATTACA MEME-2 regular expression -------------------------------------------------------------------------------- CTCCCAAAGTGCTGGGATTACA -------------------------------------------------------------------------------- Time 488.54 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTCCAGCCTGGGCRACAGAG MEME-3 width = 23 sites = 50 llr = 1446 E-value = 7.9e-406 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::a::::a::::::::4a:a:a: pos.-specific C :a:a:aa::9a::::7::a:::: probability G a:::::::a:::aa9:6:::a:a matrix T ::::a::::1:a:::3::::::: bits 2.0 * * * * ** * * ** * 1.8 ********* **** ****** 1.6 *************** ****** 1.4 *************** ****** Relative 1.2 *************** ****** Entropy 1.0 *********************** (41.7 bits) 0.8 *********************** 0.6 *********************** 0.4 *********************** 0.2 *********************** 0.0 ----------------------- Multilevel GCACTCCAGCCTGGGCGACAGAG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------- chr2:24446575-24446651 + 28 1.64e-14 tggcgccgct gcactccagcctgggcgacagag tgagattccg chr7:68799568-68799644 + 17 1.64e-14 tcacgccact gcactccagcctgggcgacagag tgagactcct chr16:17002430-17002482 + 6 1.64e-14 ccact gcactccagcctgggcgacagag tgagactcca chr13:99605068-99605131 + 4 1.64e-14 act gcactccagcctgggcgacagag cgagactcca chr18:49499944-49499998 - 21 1.64e-14 TTACACCACT GCACTCCAGCCTGGGCGACAGAG CAAGACTCCA chr1:228198165-228198231 - 33 1.64e-14 TCGCGCCACT GCACTCCAGCCTGGGCGACAGAG CGAGACTCCA chr12:71412720-71412797 - 32 1.64e-14 TCACGCCACT GCACTCCAGCCTGGGCGACAGAG CAAGACTCCG chr2:190816065-190816149 - 55 1.64e-14 CGCCACT GCACTCCAGCCTGGGCGACAGAG CGAGACTCCG chr14:77178626-77178705 - 30 1.64e-14 TGGCACCACT GCACTCCAGCCTGGGCGACAGAG CGAGACTCCG chr17:60699785-60699883 + 41 1.64e-14 tcgagccact gcactccagcctgggcgacagag caagactccg chr8:101185018-101185079 - 37 1.64e-14 CT GCACTCCAGCCTGGGCGACAGAG CGAGACTCCG chr15_KI270905v1_alt:420 + 28 1.64e-14 tcgcgcccct gcactccagcctgggcgacagag cgagactcca chr16:47273790-47273890 - 39 3.22e-14 TCACACCACT GCACTCCAGCCTGGGCAACAGAG TGAGACTCCA chr6:103235374-103235447 + 7 3.22e-14 gccact gcactccagcctgggcaacagag cgagactcct chr10:124876699-12487678 + 22 3.22e-14 tcgcaccact gcactccagcctgggcaacagag cgagactcca chr4:179918844-179918915 + 15 3.22e-14 ttgcgccact gcactccagcctgggcaacagag cgagactccg chr4:136323423-136323513 + 47 3.22e-14 ttgcaccctt gcactccagcctgggcaacagag cgagactcca chr16:74580927-74580992 + 9 3.22e-14 gcaccgtt gcactccagcctgggcaacagag cgagactacg chr12:128044026-12804408 + 5 3.22e-14 catt gcactccagcctgggcaacagag caagactcca chr1:91966018-91966089 - 45 3.22e-14 CACT GCACTCCAGCCTGGGCAACAGAG CGAGACTCCA chr12:53090066-53090165 + 38 3.22e-14 tcgcgccact gcactccagcctgggcaacagag tgagactcca chr20:43656945-43657017 + 15 3.22e-14 tcgcgccact gcactccagcctgggcaacagag cgagactccg chr8:75242779-75242825 - 16 3.22e-14 GCACCATT GCACTCCAGCCTGGGCAACAGAG CAAGACTCAG chr7:140013025-140013105 + 23 3.22e-14 tcgcgccact gcactccagcctgggcaacagag cgagactcca chr12:55062773-55062838 + 16 3.22e-14 ttgcaccact gcactccagcctgggcaacagag tgagactccg chr22:32970497-32970569 + 15 3.22e-14 tcacgccact gcactccagcctgggcaacagag cgagactcca chr5:154607700-154607783 - 35 4.81e-14 TCACGCCTCT GCACTCCAGCCTGGGTGACAGAG TGAGACTCCG chr4:48494640-48494700 + 13 4.81e-14 tcgcgccact gcactccagcctgggtgacagag tgagactcca chr4:62514989-62515051 - 29 4.81e-14 TCGCGCCACT GCACTCCAGCCTGGGTGACAGAG CGAGACTCCA chr4:54260169-54260241 + 9 4.81e-14 gcaccact gcactccagcctgggtgacagag caagactcca chr4:139001569-139001621 + 6 4.81e-14 ccatt gcactccagcctgggtgacagag caagactcca chr11:126974924-12697497 - 22 4.81e-14 ACT GCACTCCAGCCTGGGTGACAGAG CAAGACTCCA chr10:95834881-95834943 + 5 4.81e-14 cact gcactccagcctgggtgacagag cgagactccg chr12:94346386-94346463 + 25 4.81e-14 tcacaccatt gcactccagcctgggtgacagag cgagacgccg chr13:85546443-85546529 - 45 4.81e-14 TCGCACCACT GCACTCCAGCCTGGGTGACAGAG TGAGACTCCA chr12:45079332-45079384 - 26 4.81e-14 CACT GCACTCCAGCCTGGGTGACAGAG TAAGACTCCT chr17:64185569-64185631 + 9 7.93e-14 gcaccact gcactccagtctgggcgacagag tgagactcca chr7:10942683-10942743 - 28 1.43e-13 TCGCGCCACT GCATTCCAGCCTGGGCGACAGAG TGAGACTCCG chr1:69444669-69444758 - 45 1.73e-13 TTGCGCCACT GCACTCCAGTCTGGGTGACAGAG CAAGACTCCA chr3:123753471-123753542 - 37 2.51e-13 TTGCACCACT GTACTCCAGCCTGGGCAACAGAG CAAGACTCCA chr10:71490953-71491035 + 20 2.51e-13 tcacacctct gcactccagcctggacaacagag cgagactcca chr17:64433716-64433771 + 4 2.51e-13 act gcactccagcctgggggacagag tgagactgtc chr12:48102767-48102830 + 7 4.25e-13 gccact gcactccagcctgggcgacaggg cgagactccg chr17:5479455-5479526 + 6 5.00e-13 ctact gcactccagcctaggtaacagag tgagactcca chr20:33114815-33114883 + 16 6.72e-13 tcacgacatt gcactctagcctgggtgacagag tgagactcca chr6:166377140-166377203 - 35 7.63e-13 GCCACT GCACTCCAGCCTGGCTAACAGAG CGAGACTGTC chr7:68829502-68829569 + 3 1.07e-12 ct gtactccagtctgggtgacagag tgagactcca chr8:31023505-31023558 + 3 1.77e-12 ct gcattccagcctgggcgatagag tgagactgca chr7:44616892-44616945 + 22 1.77e-12 tcgcgccact gcactccatcctggacgacagag cgagactcc chr16:29577724-29577789 + 12 2.90e-12 ttgcaccact gcacaccagcctaggtgacagag cgagactccg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:24446575-24446651 1.6e-14 27_[+3]_26 chr7:68799568-68799644 1.6e-14 16_[+3]_37 chr16:17002430-17002482 1.6e-14 5_[+3]_24 chr13:99605068-99605131 1.6e-14 3_[+3]_37 chr18:49499944-49499998 1.6e-14 20_[-3]_11 chr1:228198165-228198231 1.6e-14 32_[-3]_11 chr12:71412720-71412797 1.6e-14 31_[-3]_23 chr2:190816065-190816149 1.6e-14 54_[-3]_7 chr14:77178626-77178705 1.6e-14 29_[-3]_27 chr17:60699785-60699883 1.6e-14 40_[+3]_35 chr8:101185018-101185079 1.6e-14 36_[-3]_2 chr15_KI270905v1_alt:420 1.6e-14 27_[+3]_28 chr16:47273790-47273890 3.2e-14 38_[-3]_39 chr6:103235374-103235447 3.2e-14 6_[+3]_44 chr10:124876699-12487678 3.2e-14 21_[+3]_44 chr4:179918844-179918915 3.2e-14 14_[+3]_34 chr4:136323423-136323513 3.2e-14 46_[+3]_21 chr16:74580927-74580992 3.2e-14 8_[+3]_34 chr12:128044026-12804408 3.2e-14 4_[+3]_30 chr1:91966018-91966089 3.2e-14 44_[-3]_4 chr12:53090066-53090165 3.2e-14 37_[+3]_39 chr20:43656945-43657017 3.2e-14 14_[+3]_35 chr8:75242779-75242825 3.2e-14 15_[-3]_8 chr7:140013025-140013105 3.2e-14 22_[+3]_35 chr12:55062773-55062838 3.2e-14 15_[+3]_27 chr22:32970497-32970569 3.2e-14 14_[+3]_35 chr5:154607700-154607783 4.8e-14 34_[-3]_26 chr4:48494640-48494700 4.8e-14 12_[+3]_25 chr4:62514989-62515051 4.8e-14 28_[-3]_11 chr4:54260169-54260241 4.8e-14 8_[+3]_41 chr4:139001569-139001621 4.8e-14 5_[+3]_24 chr11:126974924-12697497 4.8e-14 21_[-3]_3 chr10:95834881-95834943 4.8e-14 4_[+3]_35 chr12:94346386-94346463 4.8e-14 24_[+3]_30 chr13:85546443-85546529 4.8e-14 44_[-3]_19 chr12:45079332-45079384 4.8e-14 25_[-3]_4 chr17:64185569-64185631 7.9e-14 8_[+3]_31 chr7:10942683-10942743 1.4e-13 27_[-3]_10 chr1:69444669-69444758 1.7e-13 44_[-3]_22 chr3:123753471-123753542 2.5e-13 36_[-3]_12 chr10:71490953-71491035 2.5e-13 19_[+3]_40 chr17:64433716-64433771 2.5e-13 3_[+3]_29 chr12:48102767-48102830 4.2e-13 6_[+3]_34 chr17:5479455-5479526 5e-13 5_[+3]_43 chr20:33114815-33114883 6.7e-13 15_[+3]_30 chr6:166377140-166377203 7.6e-13 34_[-3]_6 chr7:68829502-68829569 1.1e-12 2_[+3]_42 chr8:31023505-31023558 1.8e-12 2_[+3]_28 chr7:44616892-44616945 1.8e-12 21_[+3]_9 chr16:29577724-29577789 2.9e-12 11_[+3]_31 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTCCAGCCTGGGCRACAGAG width=23 seqs=50 chr2:24446575-24446651 ( 28) GCACTCCAGCCTGGGCGACAGAG 1 chr7:68799568-68799644 ( 17) GCACTCCAGCCTGGGCGACAGAG 1 chr16:17002430-17002482 ( 6) GCACTCCAGCCTGGGCGACAGAG 1 chr13:99605068-99605131 ( 4) GCACTCCAGCCTGGGCGACAGAG 1 chr18:49499944-49499998 ( 21) GCACTCCAGCCTGGGCGACAGAG 1 chr1:228198165-228198231 ( 33) GCACTCCAGCCTGGGCGACAGAG 1 chr12:71412720-71412797 ( 32) GCACTCCAGCCTGGGCGACAGAG 1 chr2:190816065-190816149 ( 55) GCACTCCAGCCTGGGCGACAGAG 1 chr14:77178626-77178705 ( 30) GCACTCCAGCCTGGGCGACAGAG 1 chr17:60699785-60699883 ( 41) GCACTCCAGCCTGGGCGACAGAG 1 chr8:101185018-101185079 ( 37) GCACTCCAGCCTGGGCGACAGAG 1 chr15_KI270905v1_alt:420 ( 28) GCACTCCAGCCTGGGCGACAGAG 1 chr16:47273790-47273890 ( 39) GCACTCCAGCCTGGGCAACAGAG 1 chr6:103235374-103235447 ( 7) GCACTCCAGCCTGGGCAACAGAG 1 chr10:124876699-12487678 ( 22) GCACTCCAGCCTGGGCAACAGAG 1 chr4:179918844-179918915 ( 15) GCACTCCAGCCTGGGCAACAGAG 1 chr4:136323423-136323513 ( 47) GCACTCCAGCCTGGGCAACAGAG 1 chr16:74580927-74580992 ( 9) GCACTCCAGCCTGGGCAACAGAG 1 chr12:128044026-12804408 ( 5) GCACTCCAGCCTGGGCAACAGAG 1 chr1:91966018-91966089 ( 45) GCACTCCAGCCTGGGCAACAGAG 1 chr12:53090066-53090165 ( 38) GCACTCCAGCCTGGGCAACAGAG 1 chr20:43656945-43657017 ( 15) GCACTCCAGCCTGGGCAACAGAG 1 chr8:75242779-75242825 ( 16) GCACTCCAGCCTGGGCAACAGAG 1 chr7:140013025-140013105 ( 23) GCACTCCAGCCTGGGCAACAGAG 1 chr12:55062773-55062838 ( 16) GCACTCCAGCCTGGGCAACAGAG 1 chr22:32970497-32970569 ( 15) GCACTCCAGCCTGGGCAACAGAG 1 chr5:154607700-154607783 ( 35) GCACTCCAGCCTGGGTGACAGAG 1 chr4:48494640-48494700 ( 13) GCACTCCAGCCTGGGTGACAGAG 1 chr4:62514989-62515051 ( 29) GCACTCCAGCCTGGGTGACAGAG 1 chr4:54260169-54260241 ( 9) GCACTCCAGCCTGGGTGACAGAG 1 chr4:139001569-139001621 ( 6) GCACTCCAGCCTGGGTGACAGAG 1 chr11:126974924-12697497 ( 22) GCACTCCAGCCTGGGTGACAGAG 1 chr10:95834881-95834943 ( 5) GCACTCCAGCCTGGGTGACAGAG 1 chr12:94346386-94346463 ( 25) GCACTCCAGCCTGGGTGACAGAG 1 chr13:85546443-85546529 ( 45) GCACTCCAGCCTGGGTGACAGAG 1 chr12:45079332-45079384 ( 26) GCACTCCAGCCTGGGTGACAGAG 1 chr17:64185569-64185631 ( 9) GCACTCCAGTCTGGGCGACAGAG 1 chr7:10942683-10942743 ( 28) GCATTCCAGCCTGGGCGACAGAG 1 chr1:69444669-69444758 ( 45) GCACTCCAGTCTGGGTGACAGAG 1 chr3:123753471-123753542 ( 37) GTACTCCAGCCTGGGCAACAGAG 1 chr10:71490953-71491035 ( 20) GCACTCCAGCCTGGACAACAGAG 1 chr17:64433716-64433771 ( 4) GCACTCCAGCCTGGGGGACAGAG 1 chr12:48102767-48102830 ( 7) GCACTCCAGCCTGGGCGACAGGG 1 chr17:5479455-5479526 ( 6) GCACTCCAGCCTAGGTAACAGAG 1 chr20:33114815-33114883 ( 16) GCACTCTAGCCTGGGTGACAGAG 1 chr6:166377140-166377203 ( 35) GCACTCCAGCCTGGCTAACAGAG 1 chr7:68829502-68829569 ( 3) GTACTCCAGTCTGGGTGACAGAG 1 chr8:31023505-31023558 ( 3) GCATTCCAGCCTGGGCGATAGAG 1 chr7:44616892-44616945 ( 22) GCACTCCATCCTGGACGACAGAG 1 chr16:29577724-29577789 ( 12) GCACACCAGCCTAGGTGACAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 23 n= 19014 bayes= 9.05827 E= 7.9e-406 -1229 -1229 198 -1229 -1229 192 -1229 -262 202 -1229 -1229 -1229 -1229 192 -1229 -262 -362 -1229 -1229 199 -1229 198 -1229 -1229 -1229 195 -1229 -362 202 -1229 -1229 -1229 -1229 -1229 195 -362 -1229 189 -1229 -203 -1229 198 -1229 -1229 -1229 -1229 -1229 202 -262 -1229 192 -1229 -1229 -1229 198 -1229 -262 -366 189 -1229 -1229 138 -366 38 55 -1229 133 -1229 202 -1229 -1229 -1229 -1229 195 -1229 -362 202 -1229 -1229 -1229 -1229 -1229 198 -1229 199 -1229 -366 -1229 -1229 -1229 198 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 23 nsites= 50 E= 7.9e-406 0.000000 0.000000 1.000000 0.000000 0.000000 0.960000 0.000000 0.040000 1.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.000000 0.040000 0.020000 0.000000 0.000000 0.980000 0.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.980000 0.020000 0.000000 0.940000 0.000000 0.060000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.040000 0.000000 0.960000 0.000000 0.000000 0.000000 1.000000 0.000000 0.040000 0.020000 0.940000 0.000000 0.000000 0.660000 0.020000 0.320000 0.360000 0.000000 0.640000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.020000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTCCAGCCTGGGCRACAGAG MEME-3 regular expression -------------------------------------------------------------------------------- GCACTCCAGCCTGGG[CT][GA]ACAGAG -------------------------------------------------------------------------------- Time 717.52 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGAGCGAGACTCCRTCTCA MEME-4 width = 20 sites = 50 llr = 1184 E-value = 1.5e-297 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a19::2a:a::::5::::9 pos.-specific C 9::::7::::a:aa::a:a: probability G ::91a:8:a:::::5::::: matrix T 1::::3:::::a:::a:a:: bits 2.0 * * * * * 1.8 * * ******* **** 1.6 * ** ******* **** 1.4 ***** ******* ***** Relative 1.2 ************** ***** Entropy 1.0 ******************** (34.2 bits) 0.8 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CAGAGCGAGACTCCATCTCA consensus TA G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr2:35857080-35857124 + 6 9.37e-13 ggtga cagagcgagactccatctca aaaaaaaaac chr3:191682042-191682095 - 18 9.37e-13 GCCTGGGCTA CAGAGCGAGACTCCATCTCA AAGAAAAAAA chr6_GL000255v2_alt:1991 + 32 9.37e-13 gcctgggcga cagagcgagactccatctca aaaaaaaaaa chr9:137414858-137414904 - 17 9.37e-13 GCCTGGACAA CAGAGCGAGACTCCATCTCA AAAACATAAA chr9:13407554-13407595 - 19 9.37e-13 CGA CAGAGCGAGACTCCATCTCA AAAAAAAAAG chr2:147653140-147653190 + 12 9.37e-13 gcctgggcaa cagagcgagactccatctca gaaaaaaaaa chr4:94186474-94186534 - 14 9.37e-13 GCCTGGGTGA CAGAGCGAGACTCCATCTCA AAAAAAAAAA chr2_KI270894v1_alt:1025 + 19 9.37e-13 gactgggcaa cagagcgagactccatctca gaaaaaaaaa chr1:215925945-215926032 + 54 1.90e-12 gcctgggtga cagagcgagactccgtctca aaaaaacaag chr6_GL000251v2_alt:2848 - 20 1.90e-12 GCGA CAGAGCGAGACTCCGTCTCA ACAAAACAAA chr3:194625446-194625490 - 20 1.90e-12 GGTGA CAGAGCGAGACTCCGTCTCA AAAAAAACAA chr5:134066104-134066158 - 20 1.90e-12 GCCTGGGCAA CAGAGCGAGACTCCGTCTCA AAAAAATAAG chr6:154764272-154764318 - 19 1.90e-12 CTAAACAA CAGAGCGAGACTCCGTCTCA AAAAAAAAAA chr6_GL000250v2_alt:5972 - 20 1.90e-12 GCGA CAGAGCGAGACTCCGTCTCA ACAAAACAAA chr6_GL000250v2_alt:1437 + 30 1.90e-12 gccttggtga cagagcgagactccgtctca aaaaaacaaa chr10:73111354-73111454 - 37 1.90e-12 GCCTGGGCGA CAGAGCGAGACTCCGTCTCA AAACAAAAAA chr6_GL000253v2_alt:5971 - 20 1.90e-12 GCGA CAGAGCGAGACTCCGTCTCA ACAAAACAAA chr9:33999949-34000000 - 16 2.81e-12 GCCTGGGCGA CAGAGTGAGACTCCATCTCA AAATAAATAA chr5:108053451-108053513 + 32 2.81e-12 acctagacaa cagagtgagactccatctca gaaaaaaaaa chrX:140367452-140367504 + 19 2.81e-12 gcctgagtga cagagtgagactccatctca acaaacaaaa chr9:70371541-70371605 + 27 3.75e-12 gcctgtgcaa cagagtgagactccgtctca aaaaaataaa chr5:27968235-27968286 - 20 3.75e-12 GCCTGGGTGA CAGAGTGAGACTCCGTCTCA AAAATAAAAT chr8:49676137-49676192 + 17 4.65e-12 gcctgggtga cagagcaagactccatctca aaaaacaaaa chr5:52669119-52669170 + 14 4.65e-12 ggctgggcga cagagcaagactccatctca aaacaaaaaa chr5:27837080-27837133 + 20 5.59e-12 gactgggtga cagagcaagactccgtctca aaacaaaaac chr5:121480356-121480450 + 48 5.59e-12 gcctgggcaa cagagcaagactccgtctca aaaacaaaac chr2:96225903-96225959 - 13 5.59e-12 GCCTGGGCAA CAGAGCAAGACTCCGTCTCA AAAAAAAAAA chr2_KI270894v1_alt:9900 + 19 8.28e-12 gcctgggcaa tagagcgagactccatctca aaaaaaaaaa chr11:122713711-12271376 + 16 1.01e-11 gcctgggcga caaagcgagactccatctca aaaaaaaaaa chr8:85578464-85578517 - 17 1.01e-11 GCCTGGGCGA CAAAGCGAGACTCCATCTCA AAAATAAAAA chr2:33429600-33429659 - 18 1.01e-11 GCCTAGGTGA CAAAGCGAGACTCCATCTCA AGAAAAAAAA chr3:192357530-192357588 + 25 1.77e-11 gcctgggcaa cagagcgagattccgtctca aaaaaaaaaa chr13:23472176-23472224 + 11 1.97e-11 gcctgggcaa cagagcgagactccgtctcc aaaaaaaaaa chr15:24352756-24352797 + 3 1.97e-11 ga cagagcgagactccgtctcc aaaaaaaaaa chr15:21106439-21106492 - 16 2.23e-11 GCCTCGGCAA TAGAGCAAGACTCCATCTCA AAAAAATAAG chr5:140626228-140626287 - 15 2.23e-11 GCCTGGGTGA TAGAGCAAGACTCCATCTCA AAAAAAAAAG chr8:3985756-3985806 - 17 2.33e-11 ATCTGGGCGA CAGGGTGAGACTCCATCTCA AAAAAAAAAA chr10:114144389-11414444 + 14 4.00e-11 tctaatctga aagagcgagactccgtctca aaaaaaaaac chr5:76418558-76418610 + 17 4.66e-11 gcctgggtca cagagtgagactccatctcg aaaaaaaaaa chr17:5692492-5692552 - 15 5.24e-11 ACCTGGGCAA CAGAGCGAGACTCGGTCTCA AAAAAAAAAA chr5:140468230-140468283 + 15 5.24e-11 gcctgggtga cagggcaagactccgtctca aaaaaaaaac chr19:7022368-7022426 + 22 6.78e-11 gcctgggcga cagagtgagactccatctaa aaaaaaaaaa chr11:1058630-1058688 + 27 6.78e-11 gcctgtgtga cagagtgagactccatttca aaaaaaaaaa chrX:41481018-41481083 + 30 7.43e-11 gccttggcga cagagtgagactccgtctct aaaaaacaaa chr14:20906052-20906097 + 15 8.98e-11 acctgggcga cagagtgaggctccgtctca aaaaaaaaaa chr17:45615411-45615477 + 27 9.72e-11 gcctgggcga cagagtaagattccatctca aaaaataaaa chr2:112950495-112950549 + 16 1.59e-10 gcctgggcga tagagcgagacttcatctca aaaaaaaaaa chr17:62148589-62148639 - 17 1.59e-10 GCCTGGGGGA CAGAGTAGGACTCCGTCTCA AAAAAAAAAA chr20:5737642-5737720 + 43 2.14e-10 gcctgggcga cagggcgagactccatccca aaaaaaaaaa chr15:93114066-93114132 + 26 8.93e-10 gcatgggcaa cacagtaagactccatctcg aaaaaaaaaa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2:35857080-35857124 9.4e-13 5_[+4]_19 chr3:191682042-191682095 9.4e-13 17_[-4]_16 chr6_GL000255v2_alt:1991 9.4e-13 31_[+4]_14 chr9:137414858-137414904 9.4e-13 16_[-4]_10 chr9:13407554-13407595 9.4e-13 18_[-4]_3 chr2:147653140-147653190 9.4e-13 11_[+4]_19 chr4:94186474-94186534 9.4e-13 13_[-4]_27 chr2_KI270894v1_alt:1025 9.4e-13 18_[+4]_13 chr1:215925945-215926032 1.9e-12 53_[+4]_14 chr6_GL000251v2_alt:2848 1.9e-12 19_[-4]_4 chr3:194625446-194625490 1.9e-12 19_[-4]_5 chr5:134066104-134066158 1.9e-12 19_[-4]_15 chr6:154764272-154764318 1.9e-12 18_[-4]_8 chr6_GL000250v2_alt:5972 1.9e-12 19_[-4]_4 chr6_GL000250v2_alt:1437 1.9e-12 29_[+4]_18 chr10:73111354-73111454 1.9e-12 36_[-4]_44 chr6_GL000253v2_alt:5971 1.9e-12 19_[-4]_4 chr9:33999949-34000000 2.8e-12 15_[-4]_16 chr5:108053451-108053513 2.8e-12 31_[+4]_11 chrX:140367452-140367504 2.8e-12 18_[+4]_14 chr9:70371541-70371605 3.7e-12 26_[+4]_18 chr5:27968235-27968286 3.7e-12 19_[-4]_12 chr8:49676137-49676192 4.7e-12 16_[+4]_19 chr5:52669119-52669170 4.7e-12 13_[+4]_18 chr5:27837080-27837133 5.6e-12 19_[+4]_14 chr5:121480356-121480450 5.6e-12 47_[+4]_27 chr2:96225903-96225959 5.6e-12 12_[-4]_24 chr2_KI270894v1_alt:9900 8.3e-12 18_[+4]_11 chr11:122713711-12271376 1e-11 15_[+4]_16 chr8:85578464-85578517 1e-11 16_[-4]_17 chr2:33429600-33429659 1e-11 17_[-4]_22 chr3:192357530-192357588 1.8e-11 24_[+4]_14 chr13:23472176-23472224 2e-11 10_[+4]_18 chr15:24352756-24352797 2e-11 2_[+4]_19 chr15:21106439-21106492 2.2e-11 15_[-4]_18 chr5:140626228-140626287 2.2e-11 14_[-4]_25 chr8:3985756-3985806 2.3e-11 16_[-4]_14 chr10:114144389-11414444 4e-11 13_[+4]_19 chr5:76418558-76418610 4.7e-11 16_[+4]_16 chr17:5692492-5692552 5.2e-11 14_[-4]_26 chr5:140468230-140468283 5.2e-11 14_[+4]_19 chr19:7022368-7022426 6.8e-11 21_[+4]_17 chr11:1058630-1058688 6.8e-11 26_[+4]_12 chrX:41481018-41481083 7.4e-11 29_[+4]_16 chr14:20906052-20906097 9e-11 14_[+4]_11 chr17:45615411-45615477 9.7e-11 26_[+4]_20 chr2:112950495-112950549 1.6e-10 15_[+4]_19 chr17:62148589-62148639 1.6e-10 16_[-4]_14 chr20:5737642-5737720 2.1e-10 42_[+4]_16 chr15:93114066-93114132 8.9e-10 25_[+4]_21 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGAGCGAGACTCCRTCTCA width=20 seqs=50 chr2:35857080-35857124 ( 6) CAGAGCGAGACTCCATCTCA 1 chr3:191682042-191682095 ( 18) CAGAGCGAGACTCCATCTCA 1 chr6_GL000255v2_alt:1991 ( 32) CAGAGCGAGACTCCATCTCA 1 chr9:137414858-137414904 ( 17) CAGAGCGAGACTCCATCTCA 1 chr9:13407554-13407595 ( 19) CAGAGCGAGACTCCATCTCA 1 chr2:147653140-147653190 ( 12) CAGAGCGAGACTCCATCTCA 1 chr4:94186474-94186534 ( 14) CAGAGCGAGACTCCATCTCA 1 chr2_KI270894v1_alt:1025 ( 19) CAGAGCGAGACTCCATCTCA 1 chr1:215925945-215926032 ( 54) CAGAGCGAGACTCCGTCTCA 1 chr6_GL000251v2_alt:2848 ( 20) CAGAGCGAGACTCCGTCTCA 1 chr3:194625446-194625490 ( 20) CAGAGCGAGACTCCGTCTCA 1 chr5:134066104-134066158 ( 20) CAGAGCGAGACTCCGTCTCA 1 chr6:154764272-154764318 ( 19) CAGAGCGAGACTCCGTCTCA 1 chr6_GL000250v2_alt:5972 ( 20) CAGAGCGAGACTCCGTCTCA 1 chr6_GL000250v2_alt:1437 ( 30) CAGAGCGAGACTCCGTCTCA 1 chr10:73111354-73111454 ( 37) CAGAGCGAGACTCCGTCTCA 1 chr6_GL000253v2_alt:5971 ( 20) CAGAGCGAGACTCCGTCTCA 1 chr9:33999949-34000000 ( 16) CAGAGTGAGACTCCATCTCA 1 chr5:108053451-108053513 ( 32) CAGAGTGAGACTCCATCTCA 1 chrX:140367452-140367504 ( 19) CAGAGTGAGACTCCATCTCA 1 chr9:70371541-70371605 ( 27) CAGAGTGAGACTCCGTCTCA 1 chr5:27968235-27968286 ( 20) CAGAGTGAGACTCCGTCTCA 1 chr8:49676137-49676192 ( 17) CAGAGCAAGACTCCATCTCA 1 chr5:52669119-52669170 ( 14) CAGAGCAAGACTCCATCTCA 1 chr5:27837080-27837133 ( 20) CAGAGCAAGACTCCGTCTCA 1 chr5:121480356-121480450 ( 48) CAGAGCAAGACTCCGTCTCA 1 chr2:96225903-96225959 ( 13) CAGAGCAAGACTCCGTCTCA 1 chr2_KI270894v1_alt:9900 ( 19) TAGAGCGAGACTCCATCTCA 1 chr11:122713711-12271376 ( 16) CAAAGCGAGACTCCATCTCA 1 chr8:85578464-85578517 ( 17) CAAAGCGAGACTCCATCTCA 1 chr2:33429600-33429659 ( 18) CAAAGCGAGACTCCATCTCA 1 chr3:192357530-192357588 ( 25) CAGAGCGAGATTCCGTCTCA 1 chr13:23472176-23472224 ( 11) CAGAGCGAGACTCCGTCTCC 1 chr15:24352756-24352797 ( 3) CAGAGCGAGACTCCGTCTCC 1 chr15:21106439-21106492 ( 16) TAGAGCAAGACTCCATCTCA 1 chr5:140626228-140626287 ( 15) TAGAGCAAGACTCCATCTCA 1 chr8:3985756-3985806 ( 17) CAGGGTGAGACTCCATCTCA 1 chr10:114144389-11414444 ( 14) AAGAGCGAGACTCCGTCTCA 1 chr5:76418558-76418610 ( 17) CAGAGTGAGACTCCATCTCG 1 chr17:5692492-5692552 ( 15) CAGAGCGAGACTCGGTCTCA 1 chr5:140468230-140468283 ( 15) CAGGGCAAGACTCCGTCTCA 1 chr19:7022368-7022426 ( 22) CAGAGTGAGACTCCATCTAA 1 chr11:1058630-1058688 ( 27) CAGAGTGAGACTCCATTTCA 1 chrX:41481018-41481083 ( 30) CAGAGTGAGACTCCGTCTCT 1 chr14:20906052-20906097 ( 15) CAGAGTGAGGCTCCGTCTCA 1 chr17:45615411-45615477 ( 27) CAGAGTAAGATTCCATCTCA 1 chr2:112950495-112950549 ( 16) TAGAGCGAGACTTCATCTCA 1 chr17:62148589-62148639 ( 17) CAGAGTAGGACTCCGTCTCA 1 chr20:5737642-5737720 ( 43) CAGGGCGAGACTCCATCCCA 1 chr15:93114066-93114132 ( 26) CACAGTAAGACTCCATCTCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 20814 bayes= 10.6219 E= 1.5e-297 -362 182 -1229 -162 202 -1229 -1229 -1229 -203 -366 186 -1229 193 -1229 -208 -1229 -1229 -1229 198 -1229 -1229 150 -1229 19 -16 -1229 162 -1229 199 -1229 -366 -1229 -1229 -1229 198 -1229 199 -1229 -366 -1229 -1229 192 -1229 -262 -1229 -1229 -1229 202 -1229 195 -1229 -362 -1229 195 -366 -1229 113 -1229 86 -1229 -1229 -1229 -1229 202 -1229 195 -1229 -362 -1229 -366 -1229 199 -362 195 -1229 -1229 187 -267 -267 -362 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 50 E= 1.5e-297 0.020000 0.900000 0.000000 0.080000 1.000000 0.000000 0.000000 0.000000 0.060000 0.020000 0.920000 0.000000 0.940000 0.000000 0.060000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.720000 0.000000 0.280000 0.220000 0.000000 0.780000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.960000 0.000000 0.040000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.980000 0.020000 0.000000 0.540000 0.000000 0.460000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.020000 0.000000 0.980000 0.020000 0.980000 0.000000 0.000000 0.900000 0.040000 0.040000 0.020000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGAGCGAGACTCCRTCTCA MEME-4 regular expression -------------------------------------------------------------------------------- CAGAG[CT][GA]AGACTCC[AG]TCTCA -------------------------------------------------------------------------------- Time 935.76 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 width = 29 sites = 50 llr = 1488 E-value = 9.5e-413 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::9891:::1:1:9::a:a:1:4:1a1: pos.-specific C 899::::::8::::::1:8:::6:::::9 probability G :::11:9:9::98a1:1:::a9:6:9:9: matrix T 211::::9:29::::99:1:::3:a:::1 bits 2.0 ** * 1.8 * * ** * * 1.6 * ** * *** * ** * * 1.4 * *** ** ***** *** ***** Relative 1.2 ********************** ***** Entropy 1.0 ***************************** (42.9 bits) 0.8 ***************************** 0.6 ***************************** 0.4 ***************************** 0.2 ***************************** 0.0 ----------------------------- Multilevel CCCAAAGTGCTGGGATTACAGGCGTGAGC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ----------------------------- chr22:29164830-29164874 - 15 1.10e-17 T CCCAAAGTGCTGGGATTACAGGTGTGAGC CACCATGCCT chrUn_GL000216v2:129508- + 23 1.45e-17 gccttggctt cccaaagtgctgggattacaggtatgagc caccacgcct chr7:68826557-68826604 + 6 4.36e-17 gacct cccaaagtgttgggattacaggcatgagc caccgtgcct chr5:60151246-60151308 + 21 5.81e-17 gcctcagtct tccaaagtgctgggattacaggtgtgagc caccacactt chr22:17499930-17500000 - 14 1.12e-16 GCCTCGGCCT CCCAGAGTGCTGGGATTACAGGCATGAGC CACTGCGCCT chrX:26996361-26996407 + 4 2.38e-16 cct ccgaaagtgctgggattacaggcgtgagc caccacgccc chr2:32388459-32388506 + 5 2.97e-16 gctt cccaaagtgttgggattacaggcgtaagc cactgcacct chr6:155066174-155066226 + 10 4.46e-16 ctttggcct cccaaagggctgggattacaggcatgagc caccgtgcct chr13:48619663-48619714 + 9 6.45e-16 cccggcct tccaaagtgctgggattacaggtgtgaac tgctgttcct chr5:157148775-157148831 + 14 7.82e-16 accttgacct cccgaagtgttgggattacaggcatgagc caccgtcccc chr2:201864649-201864700 + 9 1.05e-15 cttggcct cccaaagtgccgggattacaggcatgagc cactgtgccc chr10:16914589-16914646 - 15 1.28e-15 GCCTTGACCT CCCAAAGTGTTGGGGTTACAGGTGTGAGC CACCACTGCT chr3:126698341-126698396 - 15 1.60e-15 ACCTTGGCCT CCCAAAGTGTTGGGATCACAGGCATGAGC CATCATGCCT chr11:72937559-72937642 + 41 1.81e-15 gcctcggcct cccaaagtgctgggaatataggcgtgagc caccgcgcct chrX:982101-982153 - 15 2.42e-15 CCTCGGCCT CCCAAAGTGCTGGGATGACAGGCGTGAGT CACTGCACCT chr2:63795707-63795758 + 10 2.42e-15 ccttggcct tccaaagtgctggaattacaggcatgagc cactgtgcct chr1:155153300-155153346 + 4 2.68e-15 cct tccaaagtgctgagattataggcgtgagc caccatgccc chr17:955571-955614 - 14 3.06e-15 T CCCGAGGTGCTGGGATTACAGGCGTGAGC CACCGCGTCT chr9:129974412-129974463 + 9 3.06e-15 ctcggcct cccgaagtgctgggactacaggcgtgagc caccacgcca chr8:138629021-138629110 + 47 3.06e-15 accttggtct cccaaagtgctgtgattacaggtgtgaac caccgtgcct chr17:64446107-64446154 + 5 3.45e-15 gtct cccaaagtgctgagaatacaggcatgagc cactgtgccc chr14:21600669-21600716 - 15 7.21e-15 GCAT CTCAAAGCGCTGGGATTACAGGTGTGAGC CACCGTGCTC chr18:79172467-79172522 + 13 7.21e-15 gccttggcct cccaaggtgctgtgattacaggcgtgagc caccgtgccc chr13:38271546-38271624 - 15 8.03e-15 GCCTTGGCCT CCTGAAGTGTTGGGATTACAGGCGTGAGC CACCGCGCCT chr20:30258090-30258135 - 14 1.16e-14 CCT CCAAAAGTGCTGAGATTATAGGCGTGAGC CACCACACTT chr1:159962360-159962419 - 15 1.30e-14 ACCTCGGCCT CCCAAAGTGCTGGGACTATAGGCGTGAAC CGCCGCCCCG chr1:224423949-224423995 - 15 2.07e-14 CTT CCCAGAGTGCAGGGATTACAGGCATGAGT CACTGTACCT chr6_GL000255v2_alt:2822 - 14 2.30e-14 GCCT CCCAAAGTTTTGGGATTACAGGCATGAGT CACCACACTG chr12:119943676-11994373 + 20 2.78e-14 cattcgggct ccccaagtcctgggattacaggtgtgagc cactgcacct chr9:6547089-6547144 + 14 3.34e-14 gcctcagcct tccaaagtgcttggattacaggtgtgaac caacacaccc chr9:136449584-136449635 + 9 3.65e-14 cccggcct cccagagtgctggggtgacaggtgtgagc cgccatgccc chr19:41294066-41294112 + 4 4.01e-14 ccc ccgaaagtcctgggattataggcgtgagc taccgtgcct chr11:84756326-84756387 - 15 4.01e-14 AGCAGTTATT TCTAAAGGGCTGGGATTACAGGTGTGAGC CACCATGCCT chr11:71805012-71805056 + 2 5.27e-14 t tccaaaatgcagggattacaggcgtaagc caccgtgcct chr3:52699555-52699638 + 41 7.56e-14 accttggcct accaaagttttgggattacaggcatgagc cactgctccc chr3:65916690-65916737 + 5 7.56e-14 gcct cccacagtgctgagattacagatgtgagc tactgcacct chr21:23783782-23783834 + 10 7.56e-14 cctcggcct cccaaagagctggggttacaggtgtgaac caccgcacct chr8:7346491-7346537 + 4 8.25e-14 cct tccaaaatgcagggattacaggcataagc caccatgcct chr4:96834091-96834136 + 3 1.06e-13 ct ctcaaagcactgggattacaggcatgagc caccacgtct chr20:63990333-63990385 + 10 1.16e-13 ctttggcct cccagagtgctgggattacagacataagt caatgtgcct chr10:124905736-12490579 + 12 1.39e-13 accttggcct cccaaaatgttggaattacagacgtgagc cgccctgctt chr15:71555098-71555144 - 15 1.51e-13 CCT CTCAAAGTGCTGGGATCAGAGGCATGAGC CACTGCACCT chr1:1546510-1546554 - 15 1.94e-13 T CCTAGAATGCTGGGATGACAGGCGTGAGC CGCCGCACCC chr11:31075798-31075846 + 6 3.74e-13 ggact ctcaaagtgctcagattacaggtgtgaac caccatgcct chr15:42553553-42553606 + 11 4.06e-13 gcctccacct ccctaagtgcagggattacaggtgagagc cactgcacct chr22_KI270876v1_alt:4-6 + 14 4.75e-13 accttggcct cccaaagtgctaggatcacagtcatgagc caccgtgcct chr10:96839422-96839465 - 14 5.56e-13 T CCCATAGTACTGGGATTACAGGTGTGAGA CACCGCACCT chr12:7348900-7348951 - 15 7.59e-13 CTTGACCT CCCAAAGTGCTGAGATTATAGAGGTAAGC CATCGCACCT chr12:7689051-7689104 - 15 8.86e-13 GCCTCGGCTT CCAGAAGTGCTGGGATTGCAGGTGTAAGC CACTGCACCG chr19:3157398-3157446 - 15 1.62e-12 GGCCT CCCAGCGTGCTGGGGTTATAGGCATGAAC CACTGCACCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr22:29164830-29164874 1.1e-17 14_[-5]_1 chrUn_GL000216v2:129508- 1.5e-17 22_[+5]_14 chr7:68826557-68826604 4.4e-17 5_[+5]_13 chr5:60151246-60151308 5.8e-17 20_[+5]_13 chr22:17499930-17500000 1.1e-16 13_[-5]_28 chrX:26996361-26996407 2.4e-16 3_[+5]_14 chr2:32388459-32388506 3e-16 4_[+5]_14 chr6:155066174-155066226 4.5e-16 9_[+5]_14 chr13:48619663-48619714 6.4e-16 8_[+5]_14 chr5:157148775-157148831 7.8e-16 13_[+5]_14 chr2:201864649-201864700 1e-15 8_[+5]_14 chr10:16914589-16914646 1.3e-15 14_[-5]_14 chr3:126698341-126698396 1.6e-15 14_[-5]_12 chr11:72937559-72937642 1.8e-15 40_[+5]_14 chrX:982101-982153 2.4e-15 14_[-5]_9 chr2:63795707-63795758 2.4e-15 9_[+5]_13 chr1:155153300-155153346 2.7e-15 3_[+5]_14 chr17:955571-955614 3.1e-15 13_[-5]_1 chr9:129974412-129974463 3.1e-15 8_[+5]_14 chr8:138629021-138629110 3.1e-15 46_[+5]_14 chr17:64446107-64446154 3.4e-15 4_[+5]_14 chr14:21600669-21600716 7.2e-15 14_[-5]_4 chr18:79172467-79172522 7.2e-15 12_[+5]_14 chr13:38271546-38271624 8e-15 14_[-5]_35 chr20:30258090-30258135 1.2e-14 13_[-5]_3 chr1:159962360-159962419 1.3e-14 14_[-5]_16 chr1:224423949-224423995 2.1e-14 14_[-5]_3 chr6_GL000255v2_alt:2822 2.3e-14 13_[-5]_4 chr12:119943676-11994373 2.8e-14 19_[+5]_13 chr9:6547089-6547144 3.3e-14 13_[+5]_13 chr9:136449584-136449635 3.7e-14 8_[+5]_14 chr19:41294066-41294112 4e-14 3_[+5]_14 chr11:84756326-84756387 4e-14 14_[-5]_18 chr11:71805012-71805056 5.3e-14 1_[+5]_14 chr3:52699555-52699638 7.6e-14 40_[+5]_14 chr3:65916690-65916737 7.6e-14 4_[+5]_14 chr21:23783782-23783834 7.6e-14 9_[+5]_14 chr8:7346491-7346537 8.2e-14 3_[+5]_14 chr4:96834091-96834136 1.1e-13 2_[+5]_14 chr20:63990333-63990385 1.2e-13 9_[+5]_14 chr10:124905736-12490579 1.4e-13 11_[+5]_14 chr15:71555098-71555144 1.5e-13 14_[-5]_3 chr1:1546510-1546554 1.9e-13 14_[-5]_1 chr11:31075798-31075846 3.7e-13 5_[+5]_14 chr15:42553553-42553606 4.1e-13 10_[+5]_14 chr22_KI270876v1_alt:4-6 4.7e-13 13_[+5]_14 chr10:96839422-96839465 5.6e-13 13_[-5]_1 chr12:7348900-7348951 7.6e-13 14_[-5]_8 chr12:7689051-7689104 8.9e-13 14_[-5]_10 chr19:3157398-3157446 1.6e-12 14_[-5]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCAAAGTGCTGGGATTACAGGYRTGAGC width=29 seqs=50 chr22:29164830-29164874 ( 15) CCCAAAGTGCTGGGATTACAGGTGTGAGC 1 chrUn_GL000216v2:129508- ( 23) CCCAAAGTGCTGGGATTACAGGTATGAGC 1 chr7:68826557-68826604 ( 6) CCCAAAGTGTTGGGATTACAGGCATGAGC 1 chr5:60151246-60151308 ( 21) TCCAAAGTGCTGGGATTACAGGTGTGAGC 1 chr22:17499930-17500000 ( 14) CCCAGAGTGCTGGGATTACAGGCATGAGC 1 chrX:26996361-26996407 ( 4) CCGAAAGTGCTGGGATTACAGGCGTGAGC 1 chr2:32388459-32388506 ( 5) CCCAAAGTGTTGGGATTACAGGCGTAAGC 1 chr6:155066174-155066226 ( 10) CCCAAAGGGCTGGGATTACAGGCATGAGC 1 chr13:48619663-48619714 ( 9) TCCAAAGTGCTGGGATTACAGGTGTGAAC 1 chr5:157148775-157148831 ( 14) CCCGAAGTGTTGGGATTACAGGCATGAGC 1 chr2:201864649-201864700 ( 9) CCCAAAGTGCCGGGATTACAGGCATGAGC 1 chr10:16914589-16914646 ( 15) CCCAAAGTGTTGGGGTTACAGGTGTGAGC 1 chr3:126698341-126698396 ( 15) CCCAAAGTGTTGGGATCACAGGCATGAGC 1 chr11:72937559-72937642 ( 41) CCCAAAGTGCTGGGAATATAGGCGTGAGC 1 chrX:982101-982153 ( 15) CCCAAAGTGCTGGGATGACAGGCGTGAGT 1 chr2:63795707-63795758 ( 10) TCCAAAGTGCTGGAATTACAGGCATGAGC 1 chr1:155153300-155153346 ( 4) TCCAAAGTGCTGAGATTATAGGCGTGAGC 1 chr17:955571-955614 ( 14) CCCGAGGTGCTGGGATTACAGGCGTGAGC 1 chr9:129974412-129974463 ( 9) CCCGAAGTGCTGGGACTACAGGCGTGAGC 1 chr8:138629021-138629110 ( 47) CCCAAAGTGCTGTGATTACAGGTGTGAAC 1 chr17:64446107-64446154 ( 5) CCCAAAGTGCTGAGAATACAGGCATGAGC 1 chr14:21600669-21600716 ( 15) CTCAAAGCGCTGGGATTACAGGTGTGAGC 1 chr18:79172467-79172522 ( 13) CCCAAGGTGCTGTGATTACAGGCGTGAGC 1 chr13:38271546-38271624 ( 15) CCTGAAGTGTTGGGATTACAGGCGTGAGC 1 chr20:30258090-30258135 ( 14) CCAAAAGTGCTGAGATTATAGGCGTGAGC 1 chr1:159962360-159962419 ( 15) CCCAAAGTGCTGGGACTATAGGCGTGAAC 1 chr1:224423949-224423995 ( 15) CCCAGAGTGCAGGGATTACAGGCATGAGT 1 chr6_GL000255v2_alt:2822 ( 14) CCCAAAGTTTTGGGATTACAGGCATGAGT 1 chr12:119943676-11994373 ( 20) CCCCAAGTCCTGGGATTACAGGTGTGAGC 1 chr9:6547089-6547144 ( 14) TCCAAAGTGCTTGGATTACAGGTGTGAAC 1 chr9:136449584-136449635 ( 9) CCCAGAGTGCTGGGGTGACAGGTGTGAGC 1 chr19:41294066-41294112 ( 4) CCGAAAGTCCTGGGATTATAGGCGTGAGC 1 chr11:84756326-84756387 ( 15) TCTAAAGGGCTGGGATTACAGGTGTGAGC 1 chr11:71805012-71805056 ( 2) TCCAAAATGCAGGGATTACAGGCGTAAGC 1 chr3:52699555-52699638 ( 41) ACCAAAGTTTTGGGATTACAGGCATGAGC 1 chr3:65916690-65916737 ( 5) CCCACAGTGCTGAGATTACAGATGTGAGC 1 chr21:23783782-23783834 ( 10) CCCAAAGAGCTGGGGTTACAGGTGTGAAC 1 chr8:7346491-7346537 ( 4) TCCAAAATGCAGGGATTACAGGCATAAGC 1 chr4:96834091-96834136 ( 3) CTCAAAGCACTGGGATTACAGGCATGAGC 1 chr20:63990333-63990385 ( 10) CCCAGAGTGCTGGGATTACAGACATAAGT 1 chr10:124905736-12490579 ( 12) CCCAAAATGTTGGAATTACAGACGTGAGC 1 chr15:71555098-71555144 ( 15) CTCAAAGTGCTGGGATCAGAGGCATGAGC 1 chr1:1546510-1546554 ( 15) CCTAGAATGCTGGGATGACAGGCGTGAGC 1 chr11:31075798-31075846 ( 6) CTCAAAGTGCTCAGATTACAGGTGTGAAC 1 chr15:42553553-42553606 ( 11) CCCTAAGTGCAGGGATTACAGGTGAGAGC 1 chr22_KI270876v1_alt:4-6 ( 14) CCCAAAGTGCTAGGATCACAGTCATGAGC 1 chr10:96839422-96839465 ( 14) CCCATAGTACTGGGATTACAGGTGTGAGA 1 chr12:7348900-7348951 ( 15) CCCAAAGTGCTGAGATTATAGAGGTAAGC 1 chr12:7689051-7689104 ( 15) CCAGAAGTGCTGGGATTGCAGGTGTAAGC 1 chr19:3157398-3157446 ( 15) CCCAGCGTGCTGGGGTTATAGGCATGAAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 29 n= 15414 bayes= 9.39886 E= 9.5e-413 -362 169 -1229 -62 -1229 186 -1229 -162 -262 176 -267 -203 181 -366 -134 -362 177 -366 -108 -362 193 -366 -267 -1229 -162 -1229 186 -1229 -362 -267 -267 187 -262 -267 179 -262 -1229 169 -1229 -45 -162 -366 -1229 187 -362 -366 189 -362 -103 -1229 172 -262 -262 -1229 192 -1229 190 -1229 -167 -1229 -262 -267 -1229 190 -1229 -208 -208 184 199 -1229 -366 -1229 -1229 172 -366 -81 202 -1229 -1229 -1229 -1229 -1229 198 -1229 -162 -1229 182 -362 -1229 133 -366 47 55 -1229 133 -1229 -362 -1229 -1229 199 -103 -1229 179 -1229 202 -1229 -1229 -1229 -81 -1229 176 -1229 -362 182 -1229 -162 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 29 nsites= 50 E= 9.5e-413 0.020000 0.820000 0.000000 0.160000 0.000000 0.920000 0.000000 0.080000 0.040000 0.860000 0.040000 0.060000 0.860000 0.020000 0.100000 0.020000 0.840000 0.020000 0.120000 0.020000 0.940000 0.020000 0.040000 0.000000 0.080000 0.000000 0.920000 0.000000 0.020000 0.040000 0.040000 0.900000 0.040000 0.040000 0.880000 0.040000 0.000000 0.820000 0.000000 0.180000 0.080000 0.020000 0.000000 0.900000 0.020000 0.020000 0.940000 0.020000 0.120000 0.000000 0.840000 0.040000 0.040000 0.000000 0.960000 0.000000 0.920000 0.000000 0.080000 0.000000 0.040000 0.040000 0.000000 0.920000 0.000000 0.060000 0.060000 0.880000 0.980000 0.000000 0.020000 0.000000 0.000000 0.840000 0.020000 0.140000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.080000 0.000000 0.900000 0.020000 0.000000 0.640000 0.020000 0.340000 0.360000 0.000000 0.640000 0.000000 0.020000 0.000000 0.000000 0.980000 0.120000 0.000000 0.880000 0.000000 1.000000 0.000000 0.000000 0.000000 0.140000 0.000000 0.860000 0.000000 0.020000 0.900000 0.000000 0.080000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCAAAGTGCTGGGATTACAGGYRTGAGC MEME-5 regular expression -------------------------------------------------------------------------------- CCCAAAGTGCTGGGATTACAGG[CT][GA]TGAGC -------------------------------------------------------------------------------- Time 1142.50 secs. ******************************************************************************** ******************************************************************************** MOTIF AGACTCCRTCTCAAAAAAAAAA MEME-6 width = 22 sites = 50 llr = 1281 E-value = 5.6e-336 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 Description -------------------------------------------------------------------------------- Simplified A a:a::::6::::99aa98a999 pos.-specific C :::a:aa::a:9:::::1:::: probability G :a:::::4:::::1:::::::: matrix T ::::a:::a:a:::::11:111 bits 2.0 *** * * 1.8 *** *** * * ** * 1.6 ******* ***** ** *** 1.4 ******* ********* **** Relative 1.2 ******* ********* **** Entropy 1.0 ********************** (37.0 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel AGACTCCATCTCAAAAAAAAAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:80798362-80798452 - 17 4.83e-14 CAACACAGGG AGACTCCATCTCAAAAAAAAAA AAAAGAAAAG chr6:17594060-17594099 + 13 4.83e-14 tgaccgtgca agactccatctcaaaaaaaaaa aaaaa chr20:33114815-33114883 + 41 4.83e-14 tgacagagtg agactccatctcaaaaaaaaaa gaacaa chr4:48494640-48494700 + 38 4.83e-14 tgacagagtg agactccatctcaaaaaaaaaa a chr3:123753471-123753542 - 13 4.83e-14 CAACAGAGCA AGACTCCATCTCAAAAAAAAAA AAAAAAAGGA chr12:128044026-12804408 + 30 4.83e-14 caacagagca agactccatctcaaaaaaaaaa aaaaaa chr7:140013025-140013105 + 48 4.83e-14 caacagagcg agactccatctcaaaaaaaaaa aaaaaaagaa chr21:14660143-14660189 + 22 4.83e-14 tgccagaacg agactccatctcaaaaaaaaaa aaa chr22:32970497-32970569 + 40 4.83e-14 caacagagcg agactccatctcaaaaaaaaaa agaaaaaaaa chr2:204131125-204131225 + 75 4.83e-14 caatggagag agactccatctcaaaaaaaaaa aaaa chr16:29577724-29577789 + 37 9.82e-14 tgacagagcg agactccgtctcaaaaaaaaaa aaaaaga chr12:55062773-55062838 + 41 9.82e-14 caacagagtg agactccgtctcaaaaaaaaaa aaa chr10:95834881-95834943 + 30 9.82e-14 tgacagagcg agactccgtctcaaaaaaaaaa aaatttaaaa chr10:124876699-12487678 + 47 1.46e-13 caacagagcg agactccatctcaaaaataaaa aaaaaataaa chr15_KI270905v1_alt:420 + 53 2.45e-13 cgacagagcg agactccatctcaaaataaaaa gaaa chr3:171721760-171721803 + 12 2.95e-13 cgacagatca agactccatctcagaaaaaaaa aaagaaaaaa chr2_KI270894v1_alt:1018 + 26 2.95e-13 caatagagct agactccatctcagaaaaaaaa aaaaaaaaga chr13:99605068-99605131 + 29 2.95e-13 cgacagagcg agactccatctcagaaaaaaaa aaaaaaaaaa chr20:43656945-43657017 + 40 5.91e-13 caacagagcg agactccgtctcaaaaacaaaa acaaaaacaa chr14:102314036-10231413 + 62 5.91e-13 gacaagagcg agactccgtctcaaaaacaaaa acaaaagcaa chr4:179918844-179918915 + 40 6.42e-13 caacagagcg agactccgtctcagaaaaaaaa aaaaaagaaa chr16:17002430-17002482 + 31 7.40e-13 cgacagagtg agactccatctcaaaaagaaaa chr1:91966018-91966089 - 21 9.88e-13 CAACAGAGCG AGACTCCATCTCAAAAAATAAA AATAAAAAAA chr13:85546443-85546529 - 21 9.88e-13 TGACAGAGTG AGACTCCATCTCAAAAAAAAAG AAAAACAGAA chr11:18561851-18561913 + 36 1.04e-12 tgactgagcg agactccatctcaagaaaaaaa aaaga chr12:45079332-45079384 - 2 1.09e-12 TGACAGAGTA AGACTCCTTCTCAAAAAAAAAA A chr7:10942683-10942743 - 4 1.19e-12 CGACAGAGTG AGACTCCGTCTCAAAAAGAAAA AAA chr12:71412720-71412797 - 8 1.29e-12 CGACAGAGCA AGACTCCGTCTCAAAAAAAAAG AAAAAAA chr14:101669054-10166912 + 31 1.58e-12 gcgcagagca agactccatctaaaaaaaaaaa aaaaagaaag chr19:43590153-43590220 + 37 1.58e-12 tgacaaggtg agactccatttcaaaaaaaaaa agaaggaaa chr7:68829502-68829569 + 28 2.07e-12 tgacagagtg agactccatcacaaaaaaaaaa aaaaaaaaaa chr9:121691459-121691536 + 49 2.07e-12 ggacagtgag agactccatgtcaaaaaaaaaa aaaaaaa chr5:130568362-130568409 + 26 2.07e-12 tgacacagct agactccatctccaaaaaaaaa chr22:31032439-31032508 - 1 2.07e-12 CGACGGAACC AGACTTCATCTCAAAAAAAAAA chr19:52567418-52567455 - 11 2.41e-12 GAGCG AGACTCCGTCTTAAAAAAAAAA AGAAAAAAAA chr11:31529057-31529130 + 47 2.91e-12 cgtgagagtg agactccgtctgaaaaaaaaaa aaaaa chr14:77178626-77178705 - 6 2.91e-12 CGACAGAGCG AGACTCCGTCTCAAAAGAAAAA AAAAA chr2:72693287-72693367 - 7 3.02e-12 TGACAGAGAA AGACTCCGTCTCAAAGAAAAAA AAAAAA chr17:65132964-65133030 + 39 3.71e-12 caacagagag agactccatctcaaaataaata aataaa chr10:34538090-34538167 + 44 4.70e-12 gacaagagcg agactccgtctcaaaaataaat aaataaataa chr17:80158841-80158898 - 13 4.70e-12 CTACACAGTG AGACTCCGTCTCAAAAATAAAT AAGTAAATAA chr3:31458885-31458948 + 39 7.10e-12 gacaagagca agactccatctcaagaaaataa taa chr5:154607700-154607783 - 11 1.19e-11 TGACAGAGTG AGACTCCGTCTCAAAAAATTAA AAAAAGAAAA chr4:54260169-54260241 + 34 1.31e-11 tgacagagca agactccatctcataaaaataa agaaataaat chr16:14648853-14648931 - 16 1.76e-11 CGACAGAGCA AGAGTCCGTCTCAAAAACAAAA CAAAACAAAA chr4:67544986-67545067 + 49 1.90e-11 ggacagagca agaccccgtctcaaaaacaaaa acaaaaaaaa chr16:47273790-47273890 - 15 4.39e-11 CAACAGAGTG AGACTCCATCTCTAAATAAATA AATAAATAAA chr11:32481907-32482001 + 47 4.81e-11 tgacaaagcg agactccgtctcaaaacaaaac aaaacaaaac chr18:62669284-62669334 - 8 6.42e-11 TGACAGAGGG AGACTCCATCTCAAAAATAACT AAATAAA chr2:24446575-24446651 + 53 5.86e-10 cgacagagtg agattccgtctctaaataaata aa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:80798362-80798452 4.8e-14 16_[-6]_52 chr6:17594060-17594099 4.8e-14 12_[+6]_5 chr20:33114815-33114883 4.8e-14 40_[+6]_6 chr4:48494640-48494700 4.8e-14 37_[+6]_1 chr3:123753471-123753542 4.8e-14 12_[-6]_37 chr12:128044026-12804408 4.8e-14 29_[+6]_6 chr7:140013025-140013105 4.8e-14 47_[+6]_11 chr21:14660143-14660189 4.8e-14 21_[+6]_3 chr22:32970497-32970569 4.8e-14 39_[+6]_11 chr2:204131125-204131225 4.8e-14 74_[+6]_4 chr16:29577724-29577789 9.8e-14 36_[+6]_7 chr12:55062773-55062838 9.8e-14 40_[+6]_3 chr10:95834881-95834943 9.8e-14 29_[+6]_11 chr10:124876699-12487678 1.5e-13 46_[+6]_20 chr15_KI270905v1_alt:420 2.4e-13 52_[+6]_4 chr3:171721760-171721803 2.9e-13 11_[+6]_10 chr2_KI270894v1_alt:1018 2.9e-13 25_[+6]_10 chr13:99605068-99605131 2.9e-13 28_[+6]_13 chr20:43656945-43657017 5.9e-13 39_[+6]_11 chr14:102314036-10231413 5.9e-13 61_[+6]_17 chr4:179918844-179918915 6.4e-13 39_[+6]_10 chr16:17002430-17002482 7.4e-13 30_[+6] chr1:91966018-91966089 9.9e-13 20_[-6]_29 chr13:85546443-85546529 9.9e-13 20_[-6]_44 chr11:18561851-18561913 1e-12 35_[+6]_5 chr12:45079332-45079384 1.1e-12 1_[-6]_29 chr7:10942683-10942743 1.2e-12 3_[-6]_35 chr12:71412720-71412797 1.3e-12 7_[-6]_48 chr14:101669054-10166912 1.6e-12 30_[+6]_22 chr19:43590153-43590220 1.6e-12 36_[+6]_9 chr7:68829502-68829569 2.1e-12 27_[+6]_18 chr9:121691459-121691536 2.1e-12 48_[+6]_7 chr5:130568362-130568409 2.1e-12 25_[+6] chr22:31032439-31032508 2.1e-12 [-6]_47 chr19:52567418-52567455 2.4e-12 10_[-6]_5 chr11:31529057-31529130 2.9e-12 46_[+6]_5 chr14:77178626-77178705 2.9e-12 5_[-6]_52 chr2:72693287-72693367 3e-12 6_[-6]_52 chr17:65132964-65133030 3.7e-12 38_[+6]_6 chr10:34538090-34538167 4.7e-12 43_[+6]_12 chr17:80158841-80158898 4.7e-12 12_[-6]_23 chr3:31458885-31458948 7.1e-12 38_[+6]_3 chr5:154607700-154607783 1.2e-11 10_[-6]_51 chr4:54260169-54260241 1.3e-11 33_[+6]_17 chr16:14648853-14648931 1.8e-11 15_[-6]_41 chr4:67544986-67545067 1.9e-11 48_[+6]_11 chr16:47273790-47273890 4.4e-11 14_[-6]_64 chr11:32481907-32482001 4.8e-11 46_[+6]_26 chr18:62669284-62669334 6.4e-11 7_[-6]_21 chr2:24446575-24446651 5.9e-10 52_[+6]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGACTCCRTCTCAAAAAAAAAA width=22 seqs=50 chr1:80798362-80798452 ( 17) AGACTCCATCTCAAAAAAAAAA 1 chr6:17594060-17594099 ( 13) AGACTCCATCTCAAAAAAAAAA 1 chr20:33114815-33114883 ( 41) AGACTCCATCTCAAAAAAAAAA 1 chr4:48494640-48494700 ( 38) AGACTCCATCTCAAAAAAAAAA 1 chr3:123753471-123753542 ( 13) AGACTCCATCTCAAAAAAAAAA 1 chr12:128044026-12804408 ( 30) AGACTCCATCTCAAAAAAAAAA 1 chr7:140013025-140013105 ( 48) AGACTCCATCTCAAAAAAAAAA 1 chr21:14660143-14660189 ( 22) AGACTCCATCTCAAAAAAAAAA 1 chr22:32970497-32970569 ( 40) AGACTCCATCTCAAAAAAAAAA 1 chr2:204131125-204131225 ( 75) AGACTCCATCTCAAAAAAAAAA 1 chr16:29577724-29577789 ( 37) AGACTCCGTCTCAAAAAAAAAA 1 chr12:55062773-55062838 ( 41) AGACTCCGTCTCAAAAAAAAAA 1 chr10:95834881-95834943 ( 30) AGACTCCGTCTCAAAAAAAAAA 1 chr10:124876699-12487678 ( 47) AGACTCCATCTCAAAAATAAAA 1 chr15_KI270905v1_alt:420 ( 53) AGACTCCATCTCAAAATAAAAA 1 chr3:171721760-171721803 ( 12) AGACTCCATCTCAGAAAAAAAA 1 chr2_KI270894v1_alt:1018 ( 26) AGACTCCATCTCAGAAAAAAAA 1 chr13:99605068-99605131 ( 29) AGACTCCATCTCAGAAAAAAAA 1 chr20:43656945-43657017 ( 40) AGACTCCGTCTCAAAAACAAAA 1 chr14:102314036-10231413 ( 62) AGACTCCGTCTCAAAAACAAAA 1 chr4:179918844-179918915 ( 40) AGACTCCGTCTCAGAAAAAAAA 1 chr16:17002430-17002482 ( 31) AGACTCCATCTCAAAAAGAAAA 1 chr1:91966018-91966089 ( 21) AGACTCCATCTCAAAAAATAAA 1 chr13:85546443-85546529 ( 21) AGACTCCATCTCAAAAAAAAAG 1 chr11:18561851-18561913 ( 36) AGACTCCATCTCAAGAAAAAAA 1 chr12:45079332-45079384 ( 2) AGACTCCTTCTCAAAAAAAAAA 1 chr7:10942683-10942743 ( 4) AGACTCCGTCTCAAAAAGAAAA 1 chr12:71412720-71412797 ( 8) AGACTCCGTCTCAAAAAAAAAG 1 chr14:101669054-10166912 ( 31) AGACTCCATCTAAAAAAAAAAA 1 chr19:43590153-43590220 ( 37) AGACTCCATTTCAAAAAAAAAA 1 chr7:68829502-68829569 ( 28) AGACTCCATCACAAAAAAAAAA 1 chr9:121691459-121691536 ( 49) AGACTCCATGTCAAAAAAAAAA 1 chr5:130568362-130568409 ( 26) AGACTCCATCTCCAAAAAAAAA 1 chr22:31032439-31032508 ( 1) AGACTTCATCTCAAAAAAAAAA 1 chr19:52567418-52567455 ( 11) AGACTCCGTCTTAAAAAAAAAA 1 chr11:31529057-31529130 ( 47) AGACTCCGTCTGAAAAAAAAAA 1 chr14:77178626-77178705 ( 6) AGACTCCGTCTCAAAAGAAAAA 1 chr2:72693287-72693367 ( 7) AGACTCCGTCTCAAAGAAAAAA 1 chr17:65132964-65133030 ( 39) AGACTCCATCTCAAAATAAATA 1 chr10:34538090-34538167 ( 44) AGACTCCGTCTCAAAAATAAAT 1 chr17:80158841-80158898 ( 13) AGACTCCGTCTCAAAAATAAAT 1 chr3:31458885-31458948 ( 39) AGACTCCATCTCAAGAAAATAA 1 chr5:154607700-154607783 ( 11) AGACTCCGTCTCAAAAAATTAA 1 chr4:54260169-54260241 ( 34) AGACTCCATCTCATAAAAATAA 1 chr16:14648853-14648931 ( 16) AGAGTCCGTCTCAAAAACAAAA 1 chr4:67544986-67545067 ( 49) AGACCCCGTCTCAAAAACAAAA 1 chr16:47273790-47273890 ( 15) AGACTCCATCTCTAAATAAATA 1 chr11:32481907-32482001 ( 47) AGACTCCGTCTCAAAACAAAAC 1 chr18:62669284-62669334 ( 8) AGACTCCATCTCAAAAATAACT 1 chr2:24446575-24446651 ( 53) AGATTCCGTCTCTAAATAAATA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 19614 bayes= 10.2228 E= 5.6e-336 202 -1229 -1229 -1229 -1229 -1229 198 -1229 202 -1229 -1229 -1229 -1229 192 -366 -362 -1229 -366 -1229 199 -1229 195 -1229 -362 -1229 198 -1229 -1229 129 -1229 58 -362 -1229 -1229 -1229 202 -1229 192 -366 -362 -362 -1229 -1229 199 -362 189 -366 -362 193 -366 -1229 -262 187 -1229 -167 -362 196 -1229 -267 -1229 199 -1229 -366 -1229 184 -366 -366 -162 170 -167 -267 -162 196 -1229 -1229 -262 193 -1229 -1229 -203 190 -366 -1229 -203 184 -366 -267 -203 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 5.6e-336 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.960000 0.020000 0.020000 0.000000 0.020000 0.000000 0.980000 0.000000 0.980000 0.000000 0.020000 0.000000 1.000000 0.000000 0.000000 0.600000 0.000000 0.380000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.960000 0.020000 0.020000 0.020000 0.000000 0.000000 0.980000 0.020000 0.940000 0.020000 0.020000 0.940000 0.020000 0.000000 0.040000 0.900000 0.000000 0.080000 0.020000 0.960000 0.000000 0.040000 0.000000 0.980000 0.000000 0.020000 0.000000 0.880000 0.020000 0.020000 0.080000 0.800000 0.080000 0.040000 0.080000 0.960000 0.000000 0.000000 0.040000 0.940000 0.000000 0.000000 0.060000 0.920000 0.020000 0.000000 0.060000 0.880000 0.020000 0.040000 0.060000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGACTCCRTCTCAAAAAAAAAA MEME-6 regular expression -------------------------------------------------------------------------------- AGACTCC[AG]TCTCAAAAAAAAAA -------------------------------------------------------------------------------- Time 1336.99 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGCTCAYGCCTGTAATCCC MEME-7 width = 20 sites = 50 llr = 1214 E-value = 1.2e-311 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 Description -------------------------------------------------------------------------------- Simplified A :1::::a:3:::1:aa:::: pos.-specific C :::a:a:6:9a::::::a9a probability G :9a:::::7:::9::::::: matrix T a:::a::4:1:a:a::a:1: bits 2.0 * * * ** * 1.8 * *** * ** ***** * 1.6 ******* ********* * 1.4 ******* *********** Relative 1.2 ******* *********** Entropy 1.0 ******************** (35.0 bits) 0.8 ******************** 0.6 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TGGCTCACGCCTGTAATCCC consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- -------------------- chr10:97343996-97344029 + 13 9.67e-13 ccaggtgtgg tggctcacgcctgtaatccc a chr3:30636202-30636240 - 7 9.67e-13 CCGGGTGCGG TGGCTCACGCCTGTAATCCC AGTACT chr19:41857036-41857074 + 13 9.67e-13 ccgggtgcgg tggctcacgcctgtaatccc agcact chr2:73770056-73770095 + 12 9.67e-13 ccaggtgtgg tggctcacgcctgtaatccc agcacttt chr5:171688040-171688076 + 12 9.67e-13 ccaggcacag tggctcacgcctgtaatccc agcac chr17:58662100-58662140 - 9 9.67e-13 CCAGGCGTGG TGGCTCACGCCTGTAATCCC AGTACTTT chr21:44081516-44081559 - 12 9.67e-13 CCCAGCGTGG TGGCTCACGCCTGTAATCCC AGCACTTTGG chr18:59749448-59749489 + 13 9.67e-13 ccaggcgtgg tggctcacgcctgtaatccc agcagtttg chr2:43015971-43016010 + 13 9.67e-13 cagggcatgg tggctcacgcctgtaatccc agcacct chr7:5202697-5202735 - 7 9.67e-13 CCGGGCGCGG TGGCTCACGCCTGTAATCCC AGCACT chr9:87985444-87985480 - 5 1.90e-12 CCGGGTGTGG TGGCTCATGCCTGTAATCCC AGCT chr7:6415400-6415444 - 13 1.90e-12 CCAGGCGTGG TGGCTCATGCCTGTAATCCC GGCCCTTTGG chr10:128198806-12819884 - 5 1.90e-12 CCAGGCATGG TGGCTCATGCCTGTAATCCC AGTA chr19:18302870-18302924 - 23 1.90e-12 CCGGGCGCGG TGGCTCATGCCTGTAATCCC AGCACTTTGG chr13:113359368-11335940 + 13 1.90e-12 ccaggtgcag tggctcatgcctgtaatccc ag chr8:140594428-140594462 - 3 1.90e-12 CCGGGCACGG TGGCTCATGCCTGTAATCCC AG chr11:63527785-63527819 + 13 1.90e-12 ccaggtgcag tggctcatgcctgtaatccc ag chr1:203533508-203533552 - 13 1.90e-12 CCGGGTGCAA TGGCTCATGCCTGTAATCCC AGCACTTTAG chrX:487380-487416 - 5 1.90e-12 CCAGACACAG TGGCTCATGCCTGTAATCCC AGCA chr11:101426897-10142693 - 5 1.90e-12 CCAGGCACAA TGGCTCATGCCTGTAATCCC ACCA chrX:152931138-152931174 + 12 2.84e-12 ccaggcacag tggctcacacctgtaatccc agcac chr2:42395419-42395463 + 13 2.84e-12 ccaggcgcgg tggctcacacctgtaatccc agcactttgg chr6:28751466-28751504 + 12 2.84e-12 ccgggctcgg tggctcacacctgtaatccc agcattt chr16:30496977-30497011 + 13 2.84e-12 ccaggcacag tggctcacacctgtaatccc ag chr16:73861713-73861748 + 12 2.84e-12 ccgggcacag tggctcacacctgtaatccc agca chr10:80123557-80123592 + 13 2.84e-12 ccaggcacag tggctcacacctgtaatccc agc chr4:69140765-69140800 - 5 2.84e-12 CCAGGCATGG TGGCTCACACCTGTAATCCC AGTA chr2:164852407-164852442 - 4 5.62e-12 CCACGTGTGG TGGCTCACGTCTGTAATCCC AGC chrX:46572357-46572404 - 17 7.49e-12 CCAGGCACAG TGGCTCACGCCTGTAATCTC AGCACTTTGG chr3:160727596-160727629 + 13 7.49e-12 ccggacgcag tggctcacgcctgtaatctc a chr7:149241941-149241975 - 3 7.49e-12 CCAGGCACGG TGGCTCACGCCTGTAATCTC AG chrX:41304494-41304530 + 12 7.49e-12 ccgggtgcgg tagctcacgcctgtaatccc agtac chr1:40467637-40467686 - 18 9.31e-12 CCGGACATGG TGGCTCATGTCTGTAATCCC AGCACATTGG chr1:26304402-26304441 + 13 9.31e-12 ccgggagcgg tggctcatgcctataatccc agcactt chr13:21067053-21067089 - 6 9.31e-12 CCTGGTGCGG TGGCTCATGCCTATAATCCC AACAC chr6_GL000255v2_alt:2052 + 13 1.21e-11 ccaggcacgg tggctcacacctataatccc a chr17:4194053-4194086 - 2 1.39e-11 CCGGGCGTGG TAGCTCATGCCTGTAATCCC A chr6:162634347-162634387 + 13 1.67e-11 ccaggcatgg tagctcacacctgtaatccc agtgcttt chr12:51882068-51882110 + 13 2.96e-11 ccaggcgcag tggctcacgcctgtattccc agcactttgg chr8:140609858-140609895 + 13 3.16e-11 ccaggcacgg gggctcacacctgtaatccc ggcac chr8:140609802-140609838 + 12 3.16e-11 ccaggcacgg gggctcacacctgtaatccc ggcac chr11:66357527-66357566 - 8 3.16e-11 CCGGGCGCAG TGGCTCACGCCCGTAATCCC AGCACTT chr16:25193914-25193949 - 4 3.34e-11 CCAGGAGCGG TGGCTCATACCTGTAATCCT AGC chr14:36352994-36353034 + 13 3.34e-11 ccaggcatgg tggctaatgcctgtaatccc agcacttt chr14:20118458-20118504 + 13 3.89e-11 ccgggcatgg tggctgatgcctgtaatccc cacactttgg chr10:69419137-69419169 + 12 4.73e-11 ccgggcacgg tggctcacacctgtaatcgc a chr20:1497545-1497583 - 8 5.90e-11 CCAGGCACAG TGACTCATACCTGTAATCCC AGCACTT chr3:49746684-49746721 - 6 8.69e-11 CCGGGCACAG TGGCTCACATCTGTAATCCT AGCAC chr10:12249399-12249431 - 2 1.03e-10 CCGGGCACGG TGGCTCACGTCTGTAATTCC A chr14:73389611-73389651 - 9 1.69e-10 CCGGGCACGG TGGTTCACACCTATAATCCC AGCACTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr10:97343996-97344029 9.7e-13 12_[+7]_1 chr3:30636202-30636240 9.7e-13 6_[-7]_12 chr19:41857036-41857074 9.7e-13 12_[+7]_6 chr2:73770056-73770095 9.7e-13 11_[+7]_8 chr5:171688040-171688076 9.7e-13 11_[+7]_5 chr17:58662100-58662140 9.7e-13 8_[-7]_12 chr21:44081516-44081559 9.7e-13 11_[-7]_12 chr18:59749448-59749489 9.7e-13 12_[+7]_9 chr2:43015971-43016010 9.7e-13 12_[+7]_7 chr7:5202697-5202735 9.7e-13 6_[-7]_12 chr9:87985444-87985480 1.9e-12 4_[-7]_12 chr7:6415400-6415444 1.9e-12 12_[-7]_12 chr10:128198806-12819884 1.9e-12 4_[-7]_12 chr19:18302870-18302924 1.9e-12 22_[-7]_12 chr13:113359368-11335940 1.9e-12 12_[+7]_2 chr8:140594428-140594462 1.9e-12 2_[-7]_12 chr11:63527785-63527819 1.9e-12 12_[+7]_2 chr1:203533508-203533552 1.9e-12 12_[-7]_12 chrX:487380-487416 1.9e-12 4_[-7]_12 chr11:101426897-10142693 1.9e-12 4_[-7]_12 chrX:152931138-152931174 2.8e-12 11_[+7]_5 chr2:42395419-42395463 2.8e-12 12_[+7]_12 chr6:28751466-28751504 2.8e-12 11_[+7]_7 chr16:30496977-30497011 2.8e-12 12_[+7]_2 chr16:73861713-73861748 2.8e-12 11_[+7]_4 chr10:80123557-80123592 2.8e-12 12_[+7]_3 chr4:69140765-69140800 2.8e-12 4_[-7]_11 chr2:164852407-164852442 5.6e-12 3_[-7]_12 chrX:46572357-46572404 7.5e-12 16_[-7]_11 chr3:160727596-160727629 7.5e-12 12_[+7]_1 chr7:149241941-149241975 7.5e-12 2_[-7]_12 chrX:41304494-41304530 7.5e-12 11_[+7]_5 chr1:40467637-40467686 9.3e-12 17_[-7]_12 chr1:26304402-26304441 9.3e-12 12_[+7]_7 chr13:21067053-21067089 9.3e-12 5_[-7]_11 chr6_GL000255v2_alt:2052 1.2e-11 12_[+7]_1 chr17:4194053-4194086 1.4e-11 1_[-7]_12 chr6:162634347-162634387 1.7e-11 12_[+7]_8 chr12:51882068-51882110 3e-11 12_[+7]_10 chr8:140609858-140609895 3.2e-11 12_[+7]_5 chr8:140609802-140609838 3.2e-11 11_[+7]_5 chr11:66357527-66357566 3.2e-11 7_[-7]_12 chr16:25193914-25193949 3.3e-11 3_[-7]_12 chr14:36352994-36353034 3.3e-11 12_[+7]_8 chr14:20118458-20118504 3.9e-11 12_[+7]_14 chr10:69419137-69419169 4.7e-11 11_[+7]_1 chr20:1497545-1497583 5.9e-11 7_[-7]_11 chr3:49746684-49746721 8.7e-11 5_[-7]_12 chr10:12249399-12249431 1e-10 1_[-7]_11 chr14:73389611-73389651 1.7e-10 8_[-7]_12 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGCTCAYGCCTGTAATCCC width=20 seqs=50 chr10:97343996-97344029 ( 13) TGGCTCACGCCTGTAATCCC 1 chr3:30636202-30636240 ( 7) TGGCTCACGCCTGTAATCCC 1 chr19:41857036-41857074 ( 13) TGGCTCACGCCTGTAATCCC 1 chr2:73770056-73770095 ( 12) TGGCTCACGCCTGTAATCCC 1 chr5:171688040-171688076 ( 12) TGGCTCACGCCTGTAATCCC 1 chr17:58662100-58662140 ( 9) TGGCTCACGCCTGTAATCCC 1 chr21:44081516-44081559 ( 12) TGGCTCACGCCTGTAATCCC 1 chr18:59749448-59749489 ( 13) TGGCTCACGCCTGTAATCCC 1 chr2:43015971-43016010 ( 13) TGGCTCACGCCTGTAATCCC 1 chr7:5202697-5202735 ( 7) TGGCTCACGCCTGTAATCCC 1 chr9:87985444-87985480 ( 5) TGGCTCATGCCTGTAATCCC 1 chr7:6415400-6415444 ( 13) TGGCTCATGCCTGTAATCCC 1 chr10:128198806-12819884 ( 5) TGGCTCATGCCTGTAATCCC 1 chr19:18302870-18302924 ( 23) TGGCTCATGCCTGTAATCCC 1 chr13:113359368-11335940 ( 13) TGGCTCATGCCTGTAATCCC 1 chr8:140594428-140594462 ( 3) TGGCTCATGCCTGTAATCCC 1 chr11:63527785-63527819 ( 13) TGGCTCATGCCTGTAATCCC 1 chr1:203533508-203533552 ( 13) TGGCTCATGCCTGTAATCCC 1 chrX:487380-487416 ( 5) TGGCTCATGCCTGTAATCCC 1 chr11:101426897-10142693 ( 5) TGGCTCATGCCTGTAATCCC 1 chrX:152931138-152931174 ( 12) TGGCTCACACCTGTAATCCC 1 chr2:42395419-42395463 ( 13) TGGCTCACACCTGTAATCCC 1 chr6:28751466-28751504 ( 12) TGGCTCACACCTGTAATCCC 1 chr16:30496977-30497011 ( 13) TGGCTCACACCTGTAATCCC 1 chr16:73861713-73861748 ( 12) TGGCTCACACCTGTAATCCC 1 chr10:80123557-80123592 ( 13) TGGCTCACACCTGTAATCCC 1 chr4:69140765-69140800 ( 5) TGGCTCACACCTGTAATCCC 1 chr2:164852407-164852442 ( 4) TGGCTCACGTCTGTAATCCC 1 chrX:46572357-46572404 ( 17) TGGCTCACGCCTGTAATCTC 1 chr3:160727596-160727629 ( 13) TGGCTCACGCCTGTAATCTC 1 chr7:149241941-149241975 ( 3) TGGCTCACGCCTGTAATCTC 1 chrX:41304494-41304530 ( 12) TAGCTCACGCCTGTAATCCC 1 chr1:40467637-40467686 ( 18) TGGCTCATGTCTGTAATCCC 1 chr1:26304402-26304441 ( 13) TGGCTCATGCCTATAATCCC 1 chr13:21067053-21067089 ( 6) TGGCTCATGCCTATAATCCC 1 chr6_GL000255v2_alt:2052 ( 13) TGGCTCACACCTATAATCCC 1 chr17:4194053-4194086 ( 2) TAGCTCATGCCTGTAATCCC 1 chr6:162634347-162634387 ( 13) TAGCTCACACCTGTAATCCC 1 chr12:51882068-51882110 ( 13) TGGCTCACGCCTGTATTCCC 1 chr8:140609858-140609895 ( 13) GGGCTCACACCTGTAATCCC 1 chr8:140609802-140609838 ( 12) GGGCTCACACCTGTAATCCC 1 chr11:66357527-66357566 ( 8) TGGCTCACGCCCGTAATCCC 1 chr16:25193914-25193949 ( 4) TGGCTCATACCTGTAATCCT 1 chr14:36352994-36353034 ( 13) TGGCTAATGCCTGTAATCCC 1 chr14:20118458-20118504 ( 13) TGGCTGATGCCTGTAATCCC 1 chr10:69419137-69419169 ( 12) TGGCTCACACCTGTAATCGC 1 chr20:1497545-1497583 ( 8) TGACTCATACCTGTAATCCC 1 chr3:49746684-49746721 ( 6) TGGCTCACATCTGTAATCCT 1 chr10:12249399-12249431 ( 2) TGGCTCACGTCTGTAATTCC 1 chr14:73389611-73389651 ( 9) TGGTTCACACCTATAATCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 20814 bayes= 8.69794 E= 1.2e-311 -1229 -1229 -267 196 -203 -1229 189 -1229 -362 -1229 195 -1229 -1229 195 -1229 -362 -1229 -1229 -1229 202 -362 192 -366 -1229 202 -1229 -1229 -1229 -1229 133 -1229 55 38 -1229 142 -1229 -1229 186 -1229 -162 -1229 198 -1229 -1229 -1229 -366 -1229 199 -162 -1229 186 -1229 -1229 -1229 -1229 202 202 -1229 -1229 -1229 199 -1229 -1229 -362 -1229 -1229 -1229 202 -1229 195 -1229 -362 -1229 186 -366 -203 -1229 192 -1229 -262 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 50 E= 1.2e-311 0.000000 0.000000 0.040000 0.960000 0.060000 0.000000 0.940000 0.000000 0.020000 0.000000 0.980000 0.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.020000 0.960000 0.020000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.640000 0.000000 0.360000 0.320000 0.000000 0.680000 0.000000 0.000000 0.920000 0.000000 0.080000 0.000000 1.000000 0.000000 0.000000 0.000000 0.020000 0.000000 0.980000 0.080000 0.000000 0.920000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.980000 0.000000 0.000000 0.020000 0.000000 0.000000 0.000000 1.000000 0.000000 0.980000 0.000000 0.020000 0.000000 0.920000 0.020000 0.060000 0.000000 0.960000 0.000000 0.040000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGCTCAYGCCTGTAATCCC MEME-7 regular expression -------------------------------------------------------------------------------- TGGCTCA[CT][GA]CCTGTAATCCC -------------------------------------------------------------------------------- Time 1523.38 secs. ******************************************************************************** ******************************************************************************** MOTIF AGTGCTGGGATTACAGGCRTG MEME-8 width = 21 sites = 50 llr = 1129 E-value = 1.4e-271 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 Description -------------------------------------------------------------------------------- Simplified A a2:1::211a::a:9::14:1 pos.-specific C ::::9::::::::9:::7::: probability G :8:8::899:::::1aa:6:9 matrix T ::a:19::::aa:1:::2:a: bits 2.0 * * 1.8 * * **** ** * 1.6 * * * **** *** * 1.4 * * ** ********** ** Relative 1.2 ***************** ** Entropy 1.0 ***************** *** (32.6 bits) 0.8 ********************* 0.6 ********************* 0.4 ********************* 0.2 ********************* 0.0 --------------------- Multilevel AGTGCTGGGATTACAGGCGTG consensus TA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- --------------------- chr16:89205755-89205798 + 6 2.38e-13 cccac agtgctgggattacaggcgtg agccaccgcg chr6_GL000252v2_alt:2534 - 13 2.38e-13 TCCCAA AGTGCTGGGATTACAGGCGTG AGCCACCGCG chr6_GL000255v2_alt:2533 - 13 2.38e-13 TCCCAA AGTGCTGGGATTACAGGCGTG AGCCACCGCG chr3:180884135-180884176 - 18 2.38e-13 CAA AGTGCTGGGATTACAGGCGTG AGCCATGGCG chr18:11794789-11794829 - 17 2.38e-13 CAA AGTGCTGGGATTACAGGCGTG AGCCACTGGG chr20:24182411-24182445 - 11 2.38e-13 CAA AGTGCTGGGATTACAGGCGTG AGCCACCCCG chr7:73780920-73780962 - 16 2.38e-13 TCCCAA AGTGCTGGGATTACAGGCGTG AGCCACTGCA chr11:77709872-77709916 + 7 4.68e-13 tcccaa agtgctgggattacaggcatg agccactgca chr13:20871509-20871546 - 13 4.68e-13 CCAG AGTGCTGGGATTACAGGCATG AGCCATGGTG chr19:12915165-12915211 - 16 1.38e-12 GGCCTCCCAA AATGCTGGGATTACAGGCGTG AGCCACTGCA chr20:36292489-36292529 + 3 2.98e-12 aa agtgctgggattacaggagtg agccatcgca chr8:13070272-13070314 + 11 2.98e-12 ggcctccaaa agtgctgggattacaggagtg agccactgca chr4:138915237-138915279 - 18 3.43e-12 CCAA AGTGCTGGGATTATAGGCATG AGCCATTGTG chr9:69246338-69246392 + 17 3.43e-12 agcctcccag agtgctgagattacaggcatg agccaccaca chr7:75406549-75406587 - 16 3.43e-12 AA AGTGCTGGGATTATAGGCATG AGCCACCATG chr17:20034488-20034530 + 5 4.33e-12 ccaa agtgctggaattacaggcatg agccaccacg chr11:33908392-33908432 + 3 5.47e-12 aa agtgctgggattacaggcata agccaccaca chr2:73809376-73809423 - 17 6.15e-12 GGCCTCCCAA AGTGCTGAGATTACAGGTGTG AGCCACCGTG chr22:42744535-42744577 - 18 1.20e-11 CCAA AGTGCTGGGATTACAGGGGTG AGCCACCGCG chrX:133936256-133936296 + 3 1.40e-11 aa aatgctgggattacaggagtg agccaccttg chr8:144771256-144771316 + 25 1.54e-11 agcctcccaa agtgctggcattacaggcgtg agccaccatg chr20:36886765-36886800 + 3 2.22e-11 aa attgctgggattacaggcatg agccactgcg chr1:241963627-241963671 + 6 2.22e-11 cccaa agtgctgggattaaaggcatg agccactggt chr1:150074623-150074682 + 27 2.47e-11 ggcctcccaa agtgatgggattacaggtgtg agccaccgca chr2:208018916-208018959 - 18 2.69e-11 CTCAA AGTGCTGGGATTACAGGCATC AGCTACTGCT chr20:35783999-35784040 + 5 3.01e-11 ccaa agtactgggattataggcatg agccactgtc chr3:172706123-172706168 + 10 3.01e-11 gtctcccaa agtgctggggttacaggcatg agctaccatg chr14:67194955-67195000 + 12 3.38e-11 tcagcctcaa agtgctaagattacaggtgtg agccaccacg chr17:6083495-6083540 + 12 4.31e-11 agcctcccaa agcgctaggattacaggcgtg agccaccacg chr1:29129818-29129872 + 19 4.31e-11 ggcctcccaa agtgctggaattacaggcata agccaccacg chr1:11050472-11050514 - 18 5.13e-11 CCAA AGTGCTGGGATTCCAGGTGTG AGCCACCGCA chr11:58565154-58565221 - 18 6.11e-11 GGCTGCCCAA AGTACTGGGATTACGGGCATG AGCCACCATG chr8:144927988-144928028 - 18 6.65e-11 AA AGTGCTGGGATTATAGACATG AGCTATTGTG chr8:20318718-20318763 + 8 6.65e-11 ctcctaa agtgttaggattacaggtgtg agccaccaca chr4:9372531-9372577 + 9 6.65e-11 ccttccaa aatgcagggattacaggcgtg agccaccatg chr9:124123135-124123189 - 18 9.63e-11 AGTCTCCCAA AGTGCTGGGATTATGGGTGTG AGCCACTGTG chr3:134863380-134863441 - 18 1.06e-10 GGCCTCCCAA AGTGCCAGGATTACAGGTGTG AGCTACCACA chr12:123809000-12380904 + 16 1.06e-10 cgcctcccaa agtgctgggactataggcgtg agccactgc chr16:19485179-19485225 + 13 1.16e-10 agcctcccaa agtgctgggataacaggagtg agccaccatg chr2:200856368-200856420 + 15 1.26e-10 ggcctcccaa agtgctgagattacagatgtg agccaccgcg chr7:122023422-122023465 - 17 1.26e-10 TCCCAA AGTTTTGGGATTACAGGCATG AGCCACCATG chr1:34856930-34856966 - 9 1.36e-10 CTCCCAA AGTTCTGGAATTACAGGTGTG AGCCACCG chr3:44468975-44469021 - 18 1.36e-10 CCTCCCAA AATACTGGAATTACAGGCATG AGTCACTGCA chr7:30254221-30254267 + 9 1.47e-10 cttcccaa agtgctgggattacgggtgta agccgccgca chr5:166076005-166076045 - 18 1.58e-10 AA AATATTGGGATTACAGGCGTG AGCCACCAAG chrY:18333030-18333070 + 4 2.48e-10 caa agtgataagattacaggcatg agccactgcg chr4:162729251-162729306 + 19 3.64e-10 agtttctcaa tatgctaggattacaggcatg agccaccgca chr3:49011422-49011479 + 20 9.73e-10 ggctttccaa agtgcccagattacaggcgtg agccaccgca chr4:184838484-184838527 + 7 1.04e-09 tctcaa aacactaggattacaggcatg agccactgcg chr7:64118358-64118401 + 6 9.11e-09 cccaa aatcctagaattacaggtgta agccaccgtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr16:89205755-89205798 2.4e-13 5_[+8]_17 chr6_GL000252v2_alt:2534 2.4e-13 12_[-8]_6 chr6_GL000255v2_alt:2533 2.4e-13 12_[-8]_6 chr3:180884135-180884176 2.4e-13 17_[-8]_3 chr18:11794789-11794829 2.4e-13 16_[-8]_3 chr20:24182411-24182445 2.4e-13 10_[-8]_3 chr7:73780920-73780962 2.4e-13 15_[-8]_6 chr11:77709872-77709916 4.7e-13 6_[+8]_17 chr13:20871509-20871546 4.7e-13 12_[-8]_4 chr19:12915165-12915211 1.4e-12 15_[-8]_10 chr20:36292489-36292529 3e-12 2_[+8]_17 chr8:13070272-13070314 3e-12 10_[+8]_11 chr4:138915237-138915279 3.4e-12 17_[-8]_4 chr9:69246338-69246392 3.4e-12 16_[+8]_17 chr7:75406549-75406587 3.4e-12 15_[-8]_2 chr17:20034488-20034530 4.3e-12 4_[+8]_17 chr11:33908392-33908432 5.5e-12 2_[+8]_17 chr2:73809376-73809423 6.1e-12 16_[-8]_10 chr22:42744535-42744577 1.2e-11 17_[-8]_4 chrX:133936256-133936296 1.4e-11 2_[+8]_17 chr8:144771256-144771316 1.5e-11 24_[+8]_15 chr20:36886765-36886800 2.2e-11 2_[+8]_12 chr1:241963627-241963671 2.2e-11 5_[+8]_18 chr1:150074623-150074682 2.5e-11 26_[+8]_12 chr2:208018916-208018959 2.7e-11 17_[-8]_5 chr20:35783999-35784040 3e-11 4_[+8]_16 chr3:172706123-172706168 3e-11 9_[+8]_15 chr14:67194955-67195000 3.4e-11 11_[+8]_13 chr17:6083495-6083540 4.3e-11 11_[+8]_13 chr1:29129818-29129872 4.3e-11 18_[+8]_15 chr1:11050472-11050514 5.1e-11 17_[-8]_4 chr11:58565154-58565221 6.1e-11 17_[-8]_29 chr8:144927988-144928028 6.6e-11 17_[-8]_2 chr8:20318718-20318763 6.6e-11 7_[+8]_17 chr4:9372531-9372577 6.6e-11 8_[+8]_17 chr9:124123135-124123189 9.6e-11 17_[-8]_16 chr3:134863380-134863441 1.1e-10 17_[-8]_23 chr12:123809000-12380904 1.1e-10 15_[+8]_9 chr16:19485179-19485225 1.2e-10 12_[+8]_13 chr2:200856368-200856420 1.3e-10 14_[+8]_17 chr7:122023422-122023465 1.3e-10 16_[-8]_6 chr1:34856930-34856966 1.4e-10 8_[-8]_7 chr3:44468975-44469021 1.4e-10 17_[-8]_8 chr7:30254221-30254267 1.5e-10 8_[+8]_17 chr5:166076005-166076045 1.6e-10 17_[-8]_2 chrY:18333030-18333070 2.5e-10 3_[+8]_16 chr4:162729251-162729306 3.6e-10 18_[+8]_16 chr3:49011422-49011479 9.7e-10 19_[+8]_17 chr4:184838484-184838527 1e-09 6_[+8]_16 chr7:64118358-64118401 9.1e-09 5_[+8]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGTGCTGGGATTACAGGCRTG width=21 seqs=50 chr16:89205755-89205798 ( 6) AGTGCTGGGATTACAGGCGTG 1 chr6_GL000252v2_alt:2534 ( 13) AGTGCTGGGATTACAGGCGTG 1 chr6_GL000255v2_alt:2533 ( 13) AGTGCTGGGATTACAGGCGTG 1 chr3:180884135-180884176 ( 18) AGTGCTGGGATTACAGGCGTG 1 chr18:11794789-11794829 ( 17) AGTGCTGGGATTACAGGCGTG 1 chr20:24182411-24182445 ( 11) AGTGCTGGGATTACAGGCGTG 1 chr7:73780920-73780962 ( 16) AGTGCTGGGATTACAGGCGTG 1 chr11:77709872-77709916 ( 7) AGTGCTGGGATTACAGGCATG 1 chr13:20871509-20871546 ( 13) AGTGCTGGGATTACAGGCATG 1 chr19:12915165-12915211 ( 16) AATGCTGGGATTACAGGCGTG 1 chr20:36292489-36292529 ( 3) AGTGCTGGGATTACAGGAGTG 1 chr8:13070272-13070314 ( 11) AGTGCTGGGATTACAGGAGTG 1 chr4:138915237-138915279 ( 18) AGTGCTGGGATTATAGGCATG 1 chr9:69246338-69246392 ( 17) AGTGCTGAGATTACAGGCATG 1 chr7:75406549-75406587 ( 16) AGTGCTGGGATTATAGGCATG 1 chr17:20034488-20034530 ( 5) AGTGCTGGAATTACAGGCATG 1 chr11:33908392-33908432 ( 3) AGTGCTGGGATTACAGGCATA 1 chr2:73809376-73809423 ( 17) AGTGCTGAGATTACAGGTGTG 1 chr22:42744535-42744577 ( 18) AGTGCTGGGATTACAGGGGTG 1 chrX:133936256-133936296 ( 3) AATGCTGGGATTACAGGAGTG 1 chr8:144771256-144771316 ( 25) AGTGCTGGCATTACAGGCGTG 1 chr20:36886765-36886800 ( 3) ATTGCTGGGATTACAGGCATG 1 chr1:241963627-241963671 ( 6) AGTGCTGGGATTAAAGGCATG 1 chr1:150074623-150074682 ( 27) AGTGATGGGATTACAGGTGTG 1 chr2:208018916-208018959 ( 18) AGTGCTGGGATTACAGGCATC 1 chr20:35783999-35784040 ( 5) AGTACTGGGATTATAGGCATG 1 chr3:172706123-172706168 ( 10) AGTGCTGGGGTTACAGGCATG 1 chr14:67194955-67195000 ( 12) AGTGCTAAGATTACAGGTGTG 1 chr17:6083495-6083540 ( 12) AGCGCTAGGATTACAGGCGTG 1 chr1:29129818-29129872 ( 19) AGTGCTGGAATTACAGGCATA 1 chr1:11050472-11050514 ( 18) AGTGCTGGGATTCCAGGTGTG 1 chr11:58565154-58565221 ( 18) AGTACTGGGATTACGGGCATG 1 chr8:144927988-144928028 ( 18) AGTGCTGGGATTATAGACATG 1 chr8:20318718-20318763 ( 8) AGTGTTAGGATTACAGGTGTG 1 chr4:9372531-9372577 ( 9) AATGCAGGGATTACAGGCGTG 1 chr9:124123135-124123189 ( 18) AGTGCTGGGATTATGGGTGTG 1 chr3:134863380-134863441 ( 18) AGTGCCAGGATTACAGGTGTG 1 chr12:123809000-12380904 ( 16) AGTGCTGGGACTATAGGCGTG 1 chr16:19485179-19485225 ( 13) AGTGCTGGGATAACAGGAGTG 1 chr2:200856368-200856420 ( 15) AGTGCTGAGATTACAGATGTG 1 chr7:122023422-122023465 ( 17) AGTTTTGGGATTACAGGCATG 1 chr1:34856930-34856966 ( 9) AGTTCTGGAATTACAGGTGTG 1 chr3:44468975-44469021 ( 18) AATACTGGAATTACAGGCATG 1 chr7:30254221-30254267 ( 9) AGTGCTGGGATTACGGGTGTA 1 chr5:166076005-166076045 ( 18) AATATTGGGATTACAGGCGTG 1 chrY:18333030-18333070 ( 4) AGTGATAAGATTACAGGCATG 1 chr4:162729251-162729306 ( 19) TATGCTAGGATTACAGGCATG 1 chr3:49011422-49011479 ( 20) AGTGCCCAGATTACAGGCGTG 1 chr4:184838484-184838527 ( 7) AACACTAGGATTACAGGCATG 1 chr7:64118358-64118401 ( 6) AATCCTAGAATTACAGGTGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 21 n= 20214 bayes= 8.65564 E= 1.4e-271 199 -1229 -1229 -362 -62 -1229 169 -362 -1229 -267 -1229 196 -130 -366 172 -262 -262 182 -1229 -203 -362 -267 -1229 193 -62 -366 169 -1229 -103 -1229 179 -1229 -130 -366 179 -1229 199 -1229 -366 -1229 -1229 -366 -1229 199 -362 -1229 -1229 199 199 -366 -1229 -1229 -362 176 -1229 -103 193 -1229 -208 -1229 -1229 -1229 198 -1229 -262 -1229 192 -1229 -162 142 -366 -16 70 -1229 124 -1229 -1229 -1229 -1229 202 -162 -366 182 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 21 nsites= 50 E= 1.4e-271 0.980000 0.000000 0.000000 0.020000 0.160000 0.000000 0.820000 0.020000 0.000000 0.040000 0.000000 0.960000 0.100000 0.020000 0.840000 0.040000 0.040000 0.900000 0.000000 0.060000 0.020000 0.040000 0.000000 0.940000 0.160000 0.020000 0.820000 0.000000 0.120000 0.000000 0.880000 0.000000 0.100000 0.020000 0.880000 0.000000 0.980000 0.000000 0.020000 0.000000 0.000000 0.020000 0.000000 0.980000 0.020000 0.000000 0.000000 0.980000 0.980000 0.020000 0.000000 0.000000 0.020000 0.860000 0.000000 0.120000 0.940000 0.000000 0.060000 0.000000 0.000000 0.000000 1.000000 0.000000 0.040000 0.000000 0.960000 0.000000 0.080000 0.680000 0.020000 0.220000 0.400000 0.000000 0.600000 0.000000 0.000000 0.000000 0.000000 1.000000 0.080000 0.020000 0.900000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGTGCTGGGATTACAGGCRTG MEME-8 regular expression -------------------------------------------------------------------------------- AGTGCTGGGATTACAGG[CT][GA]TG -------------------------------------------------------------------------------- Time 1702.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CRCCACTGCACTCCAGCCTGGG MEME-9 width = 22 sites = 50 llr = 1308 E-value = 1.1e-348 ******************************************************************************** -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 Description -------------------------------------------------------------------------------- Simplified A :4::a::::9::1:a::::::: pos.-specific C a:aa:8::a:9:99::aa:::: probability G :6:::::a:::::::a:::a9a matrix T :::::1a:::1a:1::::a::: bits 2.0 ** *** * 1.8 * *** *** * * **** * 1.6 * *** ****** ****** * 1.4 * *** **************** Relative 1.2 * ******************** Entropy 1.0 ********************** (37.7 bits) 0.8 ********************** 0.6 ********************** 0.4 ********************** 0.2 ********************** 0.0 ---------------------- Multilevel CGCCACTGCACTCCAGCCTGGG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ---------------------- chr1:215925945-215926032 + 29 6.65e-14 gctgagattg cgccactgcactccagcctggg tgacagagcg chr10:34538090-34538167 + 11 6.65e-14 agccgagatc cgccactgcactccagcctggg tgacaagagc chr4:137696076-137696143 + 2 6.65e-14 g cgccactgcactccagcctggg ggacacagag chr9:94413596-94413677 + 20 6.65e-14 gctgagatca cgccactgcactccagcctggg caacaaagcg chr6_GL000255v2_alt:1991 + 7 6.65e-14 agatcg cgccactgcactccagcctggg cgacagagcg chr10:73111354-73111454 - 60 6.65e-14 GCCGAGATCG CGCCACTGCACTCCAGCCTGGG CGACAGAGCG chr4:67544986-67545067 + 17 6.65e-14 gccaagatcg cgccactgcactccagcctggg ggacagagca chr11:18561851-18561913 + 4 6.65e-14 ttg cgccactgcactccagcctggg tgactgagcg chr4:94186474-94186534 - 37 6.65e-14 CG CGCCACTGCACTCCAGCCTGGG TGACAGAGCG chr2:204131125-204131225 + 43 6.65e-14 accaagatga cgccactgcactccagcctggg caatggagag chr10:68420727-68420803 + 8 1.31e-13 gagattg caccactgcactccagcctggg agacagagca chr1:143407483-143407563 - 51 1.31e-13 CGAAATCA CACCACTGCACTCCAGCCTGGG TAACAGAGGG chr19:32573114-32573181 + 7 1.31e-13 agatca caccactgcactccagcctggg tgacagacaa chr16:14648853-14648931 - 48 1.31e-13 CCTAGATCG CACCACTGCACTCCAGCCTGGG CGACAGAGCA chr2:122313535-122313615 + 8 1.31e-13 gagatca caccactgcactccagcctggg gacagagcaa chr1:8279803-8279863 - 32 1.31e-13 GGGATTG CACCACTGCACTCCAGCCTGGG CGACAGAACA chr12:18867855-18867916 - 39 1.95e-13 G CGCCATTGCACTCCAGCCTGGG TGACAGAGCA chr8:139432147-139432237 - 52 3.22e-13 GGCAAGATCA CACCATTGCACTCCAGCCTGGG CGACAGAGTG chr1:91959119-91959192 + 14 3.87e-13 gccaagatcg cgccactgcattccagcctggg cgatggagtg chr14:23018514-23018574 - 39 4.49e-13 . CACCACTGCACTCTAGCCTGGG CGACAGAGCG chr11:38980219-38980291 + 17 5.76e-13 gccgagattg cgccactgcactacagcctggg agacagagca chr17:45615411-45615477 + 2 5.76e-13 g cgccactgcactacagcctggg cgacagagta chr22:31032439-31032508 - 33 5.76e-13 GCCAAGATGG CACCACTGCATTCCAGCCTGGG CGACGGAACC chr17:65132964-65133030 + 7 6.38e-13 agattg caccactgcactacagcctggg caacagagag chr9:70371541-70371605 + 2 1.22e-12 g cgccactgcactccagcctgtg caacagagtg chr15:93114066-93114132 + 1 1.22e-12 . cgccactgcactccagcatggg caacacagta chr9:121691459-121691536 + 18 1.22e-12 gccgagatcg cgccactgcactccagcctgag gacagtgaga chr19:23237662-23237738 + 12 1.22e-12 gccgagatca cgccactgcactccagcatggg caacagagca chrY:2253495-2253595 + 45 1.22e-12 gcaaagatgg cgccactgcactccagtctggg tgagacaggg chr5_GL339449v2_alt:3964 + 13 1.22e-12 gctgagattg cgccactgcacttcagcctggg cgacaaggac chr1:80798362-80798452 - 49 1.29e-12 GCCGAGATCG CGCCACTGCGCTCCAGCCTGGG CAACACAGGG chr7:1129293-1129359 - 7 1.36e-12 GCCGAGATGG CGCCACTGCACTCCAGCCCGGG TGACGG chr7:1128041-1128107 - 7 1.36e-12 GCCGAGATCG CGCCACTGCACTCCAGCCCGGG TGACGG chr2:72693287-72693367 - 39 1.92e-12 GCTGAGATTG CACCACTGCACTCCAGCCTGGA TGACAGAGAA chr12:120428293-12042836 + 8 1.92e-12 gagatca caccagtgcactccagcctggg tgacagagta chrX:114001152-114001246 - 53 2.32e-12 GCCAAGATCA CGCCACTGCCCTCCAGCCTGGG CGACAGAGGG chrX:41700878-41700955 + 10 2.51e-12 ctgagattg caccactgcactccaacctggg cgacagagtg chr20:34340082-34340155 + 3 2.70e-12 ca caccactgcactccaccctggg ctacagagcg chr1:113728031-113728089 + 14 2.70e-12 accaagatca caacactgcactccagcctggg tgacagagca chr20:47173435-47173532 + 34 2.83e-12 cccaagatta caccactgcaccccagcctggg caacaaagtg chr5:140626228-140626287 - 38 3.08e-12 . CACCATTGCATTCCAGCCTGGG TGATAGAGCA chr21:31521806-31521870 - 31 3.26e-12 GCCAAGATTG CACCACTGCATTCTAGCCTGGG CCAGAGTGAT chr20:5737642-5737720 + 18 3.76e-12 actgagatca cgccattgcacttcagcctggg cgacagggcg chr6:106982461-106982527 - 9 3.76e-12 GCTGAGATGG TGCCATTGCACTCCAGCCTGGG AGGCAGAG chr5:121480356-121480450 + 23 6.56e-12 gacaagatca caccagtgcactctagcctggg caacagagca chr2:231505981-231506051 + 18 6.56e-12 agtgagatcg caccactgcactctagcctgag cgacagacgg chr10:28541415-28541515 - 46 1.18e-11 ATCGAGATCG TGCCACTGCACTCCAGCCTAGG TACAGAGTGA chr14:102314036-10231413 + 29 1.28e-11 gccgaaatcg cgccactgcgctccagtctggg cgacaagagc chr1:149712698-149712755 + 10 1.61e-11 ccgagatcg caccactgcactccagcctaga cgacagagcg chr11:1058630-1058688 + 2 2.28e-11 g cgccattgcactctagcctgtg tgacagagtg -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:215925945-215926032 6.7e-14 28_[+9]_37 chr10:34538090-34538167 6.7e-14 10_[+9]_45 chr4:137696076-137696143 6.7e-14 1_[+9]_44 chr9:94413596-94413677 6.7e-14 19_[+9]_40 chr6_GL000255v2_alt:1991 6.7e-14 6_[+9]_37 chr10:73111354-73111454 6.7e-14 59_[-9]_19 chr4:67544986-67545067 6.7e-14 16_[+9]_43 chr11:18561851-18561913 6.7e-14 3_[+9]_37 chr4:94186474-94186534 6.7e-14 36_[-9]_2 chr2:204131125-204131225 6.7e-14 42_[+9]_36 chr10:68420727-68420803 1.3e-13 7_[+9]_47 chr1:143407483-143407563 1.3e-13 50_[-9]_8 chr19:32573114-32573181 1.3e-13 6_[+9]_39 chr16:14648853-14648931 1.3e-13 47_[-9]_9 chr2:122313535-122313615 1.3e-13 7_[+9]_51 chr1:8279803-8279863 1.3e-13 31_[-9]_7 chr12:18867855-18867916 2e-13 38_[-9]_1 chr8:139432147-139432237 3.2e-13 51_[-9]_17 chr1:91959119-91959192 3.9e-13 13_[+9]_38 chr14:23018514-23018574 4.5e-13 38_[-9] chr11:38980219-38980291 5.8e-13 16_[+9]_34 chr17:45615411-45615477 5.8e-13 1_[+9]_43 chr22:31032439-31032508 5.8e-13 32_[-9]_15 chr17:65132964-65133030 6.4e-13 6_[+9]_38 chr9:70371541-70371605 1.2e-12 1_[+9]_41 chr15:93114066-93114132 1.2e-12 [+9]_44 chr9:121691459-121691536 1.2e-12 17_[+9]_38 chr19:23237662-23237738 1.2e-12 11_[+9]_43 chrY:2253495-2253595 1.2e-12 44_[+9]_34 chr5_GL339449v2_alt:3964 1.2e-12 12_[+9]_14 chr1:80798362-80798452 1.3e-12 48_[-9]_20 chr7:1129293-1129359 1.4e-12 6_[-9]_38 chr7:1128041-1128107 1.4e-12 6_[-9]_38 chr2:72693287-72693367 1.9e-12 38_[-9]_20 chr12:120428293-12042836 1.9e-12 7_[+9]_45 chrX:114001152-114001246 2.3e-12 52_[-9]_20 chrX:41700878-41700955 2.5e-12 9_[+9]_46 chr20:34340082-34340155 2.7e-12 2_[+9]_49 chr1:113728031-113728089 2.7e-12 13_[+9]_23 chr20:47173435-47173532 2.8e-12 33_[+9]_42 chr5:140626228-140626287 3.1e-12 37_[-9] chr21:31521806-31521870 3.3e-12 30_[-9]_12 chr20:5737642-5737720 3.8e-12 17_[+9]_39 chr6:106982461-106982527 3.8e-12 8_[-9]_36 chr5:121480356-121480450 6.6e-12 22_[+9]_50 chr2:231505981-231506051 6.6e-12 17_[+9]_31 chr10:28541415-28541515 1.2e-11 45_[-9]_33 chr14:102314036-10231413 1.3e-11 28_[+9]_50 chr1:149712698-149712755 1.6e-11 9_[+9]_26 chr11:1058630-1058688 2.3e-11 1_[+9]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CRCCACTGCACTCCAGCCTGGG width=22 seqs=50 chr1:215925945-215926032 ( 29) CGCCACTGCACTCCAGCCTGGG 1 chr10:34538090-34538167 ( 11) CGCCACTGCACTCCAGCCTGGG 1 chr4:137696076-137696143 ( 2) CGCCACTGCACTCCAGCCTGGG 1 chr9:94413596-94413677 ( 20) CGCCACTGCACTCCAGCCTGGG 1 chr6_GL000255v2_alt:1991 ( 7) CGCCACTGCACTCCAGCCTGGG 1 chr10:73111354-73111454 ( 60) CGCCACTGCACTCCAGCCTGGG 1 chr4:67544986-67545067 ( 17) CGCCACTGCACTCCAGCCTGGG 1 chr11:18561851-18561913 ( 4) CGCCACTGCACTCCAGCCTGGG 1 chr4:94186474-94186534 ( 37) CGCCACTGCACTCCAGCCTGGG 1 chr2:204131125-204131225 ( 43) CGCCACTGCACTCCAGCCTGGG 1 chr10:68420727-68420803 ( 8) CACCACTGCACTCCAGCCTGGG 1 chr1:143407483-143407563 ( 51) CACCACTGCACTCCAGCCTGGG 1 chr19:32573114-32573181 ( 7) CACCACTGCACTCCAGCCTGGG 1 chr16:14648853-14648931 ( 48) CACCACTGCACTCCAGCCTGGG 1 chr2:122313535-122313615 ( 8) CACCACTGCACTCCAGCCTGGG 1 chr1:8279803-8279863 ( 32) CACCACTGCACTCCAGCCTGGG 1 chr12:18867855-18867916 ( 39) CGCCATTGCACTCCAGCCTGGG 1 chr8:139432147-139432237 ( 52) CACCATTGCACTCCAGCCTGGG 1 chr1:91959119-91959192 ( 14) CGCCACTGCATTCCAGCCTGGG 1 chr14:23018514-23018574 ( 39) CACCACTGCACTCTAGCCTGGG 1 chr11:38980219-38980291 ( 17) CGCCACTGCACTACAGCCTGGG 1 chr17:45615411-45615477 ( 2) CGCCACTGCACTACAGCCTGGG 1 chr22:31032439-31032508 ( 33) CACCACTGCATTCCAGCCTGGG 1 chr17:65132964-65133030 ( 7) CACCACTGCACTACAGCCTGGG 1 chr9:70371541-70371605 ( 2) CGCCACTGCACTCCAGCCTGTG 1 chr15:93114066-93114132 ( 1) CGCCACTGCACTCCAGCATGGG 1 chr9:121691459-121691536 ( 18) CGCCACTGCACTCCAGCCTGAG 1 chr19:23237662-23237738 ( 12) CGCCACTGCACTCCAGCATGGG 1 chrY:2253495-2253595 ( 45) CGCCACTGCACTCCAGTCTGGG 1 chr5_GL339449v2_alt:3964 ( 13) CGCCACTGCACTTCAGCCTGGG 1 chr1:80798362-80798452 ( 49) CGCCACTGCGCTCCAGCCTGGG 1 chr7:1129293-1129359 ( 7) CGCCACTGCACTCCAGCCCGGG 1 chr7:1128041-1128107 ( 7) CGCCACTGCACTCCAGCCCGGG 1 chr2:72693287-72693367 ( 39) CACCACTGCACTCCAGCCTGGA 1 chr12:120428293-12042836 ( 8) CACCAGTGCACTCCAGCCTGGG 1 chrX:114001152-114001246 ( 53) CGCCACTGCCCTCCAGCCTGGG 1 chrX:41700878-41700955 ( 10) CACCACTGCACTCCAACCTGGG 1 chr20:34340082-34340155 ( 3) CACCACTGCACTCCACCCTGGG 1 chr1:113728031-113728089 ( 14) CAACACTGCACTCCAGCCTGGG 1 chr20:47173435-47173532 ( 34) CACCACTGCACCCCAGCCTGGG 1 chr5:140626228-140626287 ( 38) CACCATTGCATTCCAGCCTGGG 1 chr21:31521806-31521870 ( 31) CACCACTGCATTCTAGCCTGGG 1 chr20:5737642-5737720 ( 18) CGCCATTGCACTTCAGCCTGGG 1 chr6:106982461-106982527 ( 9) TGCCATTGCACTCCAGCCTGGG 1 chr5:121480356-121480450 ( 23) CACCAGTGCACTCTAGCCTGGG 1 chr2:231505981-231506051 ( 18) CACCACTGCACTCTAGCCTGAG 1 chr10:28541415-28541515 ( 46) TGCCACTGCACTCCAGCCTAGG 1 chr14:102314036-10231413 ( 29) CGCCACTGCGCTCCAGTCTGGG 1 chr1:149712698-149712755 ( 10) CACCACTGCACTCCAGCCTAGA 1 chr11:1058630-1058688 ( 2) CGCCATTGCACTCTAGCCTGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 22 n= 19614 bayes= 9.74696 E= 1.1e-348 -1229 192 -1229 -262 77 -1229 119 -1229 -362 195 -1229 -1229 -1229 198 -1229 -1229 202 -1229 -1229 -1229 -1229 172 -267 -103 -1229 -1229 -1229 202 -1229 -1229 198 -1229 -1229 198 -1229 -1229 193 -366 -267 -1229 -1229 186 -1229 -162 -1229 -366 -1229 199 -203 182 -1229 -262 -1229 182 -1229 -130 202 -1229 -1229 -1229 -362 -366 192 -1229 -1229 192 -1229 -262 -262 192 -1229 -1229 -1229 -267 -1229 196 -262 -1229 192 -1229 -262 -1229 186 -262 -262 -1229 192 -1229 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 22 nsites= 50 E= 1.1e-348 0.000000 0.960000 0.000000 0.040000 0.420000 0.000000 0.580000 0.000000 0.020000 0.980000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.840000 0.040000 0.120000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.940000 0.020000 0.040000 0.000000 0.000000 0.920000 0.000000 0.080000 0.000000 0.020000 0.000000 0.980000 0.060000 0.900000 0.000000 0.040000 0.000000 0.900000 0.000000 0.100000 1.000000 0.000000 0.000000 0.000000 0.020000 0.020000 0.960000 0.000000 0.000000 0.960000 0.000000 0.040000 0.040000 0.960000 0.000000 0.000000 0.000000 0.040000 0.000000 0.960000 0.040000 0.000000 0.960000 0.000000 0.040000 0.000000 0.920000 0.040000 0.040000 0.000000 0.960000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CRCCACTGCACTCCAGCCTGGG MEME-9 regular expression -------------------------------------------------------------------------------- C[GA]CCACTGCACTCCAGCCTGGG -------------------------------------------------------------------------------- Time 1871.63 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 width = 31 sites = 50 llr = 1159 E-value = 3.8e-263 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 Description -------------------------------------------------------------------------------- Simplified A 11::1:1:111:::121:21918:216:::1 pos.-specific C 11:211::::1111:1:::1:::5:1:3:9: probability G :::11::1:11::1111118:9::6736::: matrix T 88978998978998877961::24211:a19 bits 2.0 1.8 * 1.6 * * * * 1.4 * * * * * * *** Relative 1.2 * **** ** * *** *** Entropy 1.0 * * ***** **** * *** *** (33.4 bits) 0.8 *************** ** **** ****** 0.6 ******************************* 0.4 ******************************* 0.2 ******************************* 0.0 ------------------------------- Multilevel TTTTTTTTTTTTTTTTTTTGAGACGGAGTCT consensus A T GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Strand Start P-value Site ------------- ------ ----- --------- ------------------------------- chr9:85580396-85580442 + 2 4.36e-16 t tttttttttgtttgtttttgagatggagtct cgcactgttg chr15:20100176-20100235 + 1 1.05e-15 . ttttgtttttttttttttggagatggactct cgctctactg chr7:93701664-93701707 + 2 3.19e-15 t ttttttttttttttttttccagatggagtct cactctgtca chr17:5479455-5479526 - 31 3.65e-15 TTTTTTTTTT TTTTTTTTTTTTTTTTTTTTACATGGAGTCT CACTCTGTTA chr15:22995523-22995600 - 40 3.65e-15 TTTTTGT TTTGTTTTTTTTTTTTTTTGAGACGGAGCCT TGCTTTGTCA chr1:13168271-13168323 + 2 4.78e-15 t tttttttttttttccttttgagatggagtct cactctattg chr7:13301035-13301079 + 2 4.78e-15 t tttcttttttgtttgttttgagatggagtct tgctctgtcg chr8_KI270813v1_alt:1014 - 11 5.47e-15 T CTTTTTTTTTTTTTTCTTTGAGACTGAGTCT TGCTCTGTCG chr19:52371349-52371398 + 1 9.21e-15 . tttttttttttctttttctgagatggagtct ctctttgtca chr1:26160449-26160498 - 19 1.20e-14 . TTTCTTTTTTTTTTTTCTTTAGACGGAGTCT TGCTTTGTCA chr7:98644972-98645027 + 2 3.27e-14 t ttttctttttttcttttttgagatgaagtct cactctgtca chr10:28541415-28541515 + 8 7.62e-14 ttttttt tttttttttttttttttttaagacagtctca ctctgtacct chr18:42268527-42268581 - 23 1.22e-13 T TTTTTTTTTTTTCTTTTTTGAAACGGAGTCC CAGTCTGTCG chr6:103235374-103235447 - 32 2.74e-13 TTTTTTCTTT TTTCTTTTTCTTTTTTTTTTAGAAGGAGTCT CGCTCTGTTG chr4:107658311-107658380 - 32 3.83e-13 TTTCTTC CTTTCTTTTTTTTTTTTTTTAAATGGAGTCT CGCTGTGTTG chr20:47173435-47173532 - 66 4.29e-13 T TTTTTTTTTTTTTTTTTTTTTTACGGGGTCT CACTTTGTTG chr4:154128916-154128970 + 2 4.79e-13 t tctttctttttttttttttgagaggaagtct cactctgtca chr19:23237662-23237738 - 44 5.35e-13 TT TTCTTTTTTTTTTTTTTTTAAGACGGGTTCT TGCTCTGTTG chr20:34340082-34340155 - 35 9.23e-13 TTCTTTCT TCCTTTTTTTTTTTTCTTTGAAACGGAGTCT CGCTCTGTAG chr5:69271926-69271972 + 2 9.23e-13 t tttgtttttttttttctttgagacagtctca ctctgttccc chr16:74580927-74580992 - 34 1.75e-12 T TTTCTGTTTGTTTGTTTTTGAGACGTAGTCT CGCTCTGTTG chr10:71490953-71491035 - 45 2.16e-12 TCTTTTT ATTTTATTTTATTTTTTTTGCGATGGAGTCT CGCTCTGTTG chr5:128405153-128405212 - 28 2.66e-12 T TTTCCTTTTTTGTTTTTTAAAGATGGAGTCT AGCTGTGTCA chr8:139432147-139432237 + 11 2.66e-12 tttatttatt tttatttttttcttgttttgagatggaatct cactctgtcg chr8:26128417-26128466 - 18 3.27e-12 T TTTTGTTTTTTTGTTTTTTGAAACAGTCTCT CTCTGTCACC chrX:131711692-131711777 - 44 6.01e-12 TTTTTCTTTC TTTTTCTTTTCTTTTTTTTGAGCCCGACTCT TATTCTGTCA chr17:17955638-17955692 + 2 9.88e-12 t cttctttgttgttttttaagagatggagtct tgctctgcca chr5:59771381-59771427 - 15 1.46e-11 T TCTTTCTTTCCTTCTTTTTGAGATGGAGTCT CGCTCTGTCG chr12:112217984-11221803 + 2 1.46e-11 t tattatttttttattttttgagacagtctca ttctgtcatc chrX:120631889-120631975 - 54 1.61e-11 TA ATTTTTTGTATTTTTAGTAGAGACGGGGTTT CACTGTGTTA chr12:53090066-53090165 - 63 1.95e-11 TTTTTG GGTGTTTTTGGTTTTTTTTGAGATGGAGTCT CACTCTGTTG chr11:108557206-10855726 + 2 4.55e-11 t ttgtttgtttgcttgttttgagatggagtct tgttctgtca chr8:65672674-65672720 + 4 8.63e-11 taa ttttttaatatttttagtagagatggggttt caccatgtta chr16:23278413-23278463 + 1 1.24e-10 . ttttgttttgctttgttttgagacagtctca cactgtcacc chr19:29394500-29394582 + 8 1.76e-10 tcttttt tattttttctttttttgtggagtcttgctct atcacccagg chr9:107429321-107429358 - 6 2.72e-10 T AATTTTTGTATTTTTAGTAGAGACAGGGTTT CACCA chr20:45773008-45773059 + 20 2.72e-10 acacccggct aatttttgtatttttagtagagacagggttt c chr10:49966144-49966201 - 27 4.17e-10 . TTTCATTTTATTTCATTTAGAGATGAAGACT CACTCTACCG chr17:47647145-47647198 + 1 4.54e-10 . tttctttttttttgaaatggagtcttgctct ggcacccagg chrX:114001152-114001246 + 12 4.54e-10 ttttattatt tatttatttattcatttatgagatggggtct ccctctgtcg chr7:23443425-23443465 + 1 6.90e-10 . atttttgtatattttagtagagacggggttt cgccatgct chrX:89218228-89218284 - 25 6.90e-10 T TGTTTTATTTATTTATTTTGAGACAATCTCA CTCTGTCACT chr7:27446622-27446686 + 6 6.90e-10 tttcc ttttagtttttagtttttggggatggagtct cactctgtca chr2:108724938-108724978 - 9 1.56e-09 T TTTTTTTTTAATTCAGATGGAGTCTCACTCT GTCGCCCA chrX:21979901-21979946 - 15 2.94e-09 . TTTTTTTTTTTTTTTGAGACATTCTCGCTCT GCAGCCCAAG chr20:56056570-56056620 + 5 2.94e-09 tttg tttgtttgtttttgaaatggagtctcgctct gtcgcccagg chr14:23018514-23018574 + 4 3.71e-09 tta tttctttttttttgagatggagtgtcgctct gtcgcccagg chr10:35141117-35141164 + 2 4.01e-09 t tattttttattttttgagacagtctcactct gttgcccagg chr16:30681382-30681449 - 27 8.54e-09 TTTTTCATTT TATTTTACATATATATTTTGAGCCGGAGTCT CGCTCTGTCG chr2:11171409-11171458 - 19 1.91e-08 . TTTATTTATTTATTTATGACAGTCTCACTCT GTCACCCAGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr9:85580396-85580442 4.4e-16 1_[+10]_14 chr15:20100176-20100235 1e-15 [+10]_28 chr7:93701664-93701707 3.2e-15 1_[+10]_11 chr17:5479455-5479526 3.7e-15 30_[-10]_10 chr15:22995523-22995600 3.7e-15 39_[-10]_7 chr1:13168271-13168323 4.8e-15 1_[+10]_20 chr7:13301035-13301079 4.8e-15 1_[+10]_12 chr8_KI270813v1_alt:1014 5.5e-15 10_[-10]_1 chr19:52371349-52371398 9.2e-15 [+10]_18 chr1:26160449-26160498 1.2e-14 18_[-10] chr7:98644972-98645027 3.3e-14 1_[+10]_23 chr10:28541415-28541515 7.6e-14 7_[+10]_62 chr18:42268527-42268581 1.2e-13 22_[-10]_1 chr6:103235374-103235447 2.7e-13 31_[-10]_11 chr4:107658311-107658380 3.8e-13 31_[-10]_7 chr20:47173435-47173532 4.3e-13 65_[-10]_1 chr4:154128916-154128970 4.8e-13 1_[+10]_22 chr19:23237662-23237738 5.4e-13 43_[-10]_2 chr20:34340082-34340155 9.2e-13 34_[-10]_8 chr5:69271926-69271972 9.2e-13 1_[+10]_14 chr16:74580927-74580992 1.8e-12 33_[-10]_1 chr10:71490953-71491035 2.2e-12 44_[-10]_7 chr5:128405153-128405212 2.7e-12 27_[-10]_1 chr8:139432147-139432237 2.7e-12 10_[+10]_49 chr8:26128417-26128466 3.3e-12 17_[-10]_1 chrX:131711692-131711777 6e-12 43_[-10]_11 chr17:17955638-17955692 9.9e-12 1_[+10]_22 chr5:59771381-59771427 1.5e-11 14_[-10]_1 chr12:112217984-11221803 1.5e-11 1_[+10]_20 chrX:120631889-120631975 1.6e-11 53_[-10]_2 chr12:53090066-53090165 1.9e-11 62_[-10]_6 chr11:108557206-10855726 4.6e-11 1_[+10]_24 chr8:65672674-65672720 8.6e-11 3_[+10]_12 chr16:23278413-23278463 1.2e-10 [+10]_19 chr19:29394500-29394582 1.8e-10 7_[+10]_44 chr9:107429321-107429358 2.7e-10 5_[-10]_1 chr20:45773008-45773059 2.7e-10 19_[+10]_1 chr10:49966144-49966201 4.2e-10 26_[-10] chr17:47647145-47647198 4.5e-10 [+10]_22 chrX:114001152-114001246 4.5e-10 11_[+10]_52 chr7:23443425-23443465 6.9e-10 [+10]_9 chrX:89218228-89218284 6.9e-10 24_[-10]_1 chr7:27446622-27446686 6.9e-10 5_[+10]_28 chr2:108724938-108724978 1.6e-09 8_[-10]_1 chrX:21979901-21979946 2.9e-09 14_[-10] chr20:56056570-56056620 2.9e-09 4_[+10]_15 chr14:23018514-23018574 3.7e-09 3_[+10]_26 chr10:35141117-35141164 4e-09 1_[+10]_15 chr16:30681382-30681449 8.5e-09 26_[-10]_10 chr2:11171409-11171458 1.9e-08 18_[-10] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT width=31 seqs=50 chr9:85580396-85580442 ( 2) TTTTTTTTTGTTTGTTTTTGAGATGGAGTCT 1 chr15:20100176-20100235 ( 1) TTTTGTTTTTTTTTTTTTGGAGATGGACTCT 1 chr7:93701664-93701707 ( 2) TTTTTTTTTTTTTTTTTTCCAGATGGAGTCT 1 chr17:5479455-5479526 ( 31) TTTTTTTTTTTTTTTTTTTTACATGGAGTCT 1 chr15:22995523-22995600 ( 40) TTTGTTTTTTTTTTTTTTTGAGACGGAGCCT 1 chr1:13168271-13168323 ( 2) TTTTTTTTTTTTTCCTTTTGAGATGGAGTCT 1 chr7:13301035-13301079 ( 2) TTTCTTTTTTGTTTGTTTTGAGATGGAGTCT 1 chr8_KI270813v1_alt:1014 ( 11) CTTTTTTTTTTTTTTCTTTGAGACTGAGTCT 1 chr19:52371349-52371398 ( 1) TTTTTTTTTTTCTTTTTCTGAGATGGAGTCT 1 chr1:26160449-26160498 ( 19) TTTCTTTTTTTTTTTTCTTTAGACGGAGTCT 1 chr7:98644972-98645027 ( 2) TTTTCTTTTTTTCTTTTTTGAGATGAAGTCT 1 chr10:28541415-28541515 ( 8) TTTTTTTTTTTTTTTTTTTAAGACAGTCTCA 1 chr18:42268527-42268581 ( 23) TTTTTTTTTTTTCTTTTTTGAAACGGAGTCC 1 chr6:103235374-103235447 ( 32) TTTCTTTTTCTTTTTTTTTTAGAAGGAGTCT 1 chr4:107658311-107658380 ( 32) CTTTCTTTTTTTTTTTTTTTAAATGGAGTCT 1 chr20:47173435-47173532 ( 66) TTTTTTTTTTTTTTTTTTTTTTACGGGGTCT 1 chr4:154128916-154128970 ( 2) TCTTTCTTTTTTTTTTTTTGAGAGGAAGTCT 1 chr19:23237662-23237738 ( 44) TTCTTTTTTTTTTTTTTTTAAGACGGGTTCT 1 chr20:34340082-34340155 ( 35) TCCTTTTTTTTTTTTCTTTGAAACGGAGTCT 1 chr5:69271926-69271972 ( 2) TTTGTTTTTTTTTTTCTTTGAGACAGTCTCA 1 chr16:74580927-74580992 ( 34) TTTCTGTTTGTTTGTTTTTGAGACGTAGTCT 1 chr10:71490953-71491035 ( 45) ATTTTATTTTATTTTTTTTGCGATGGAGTCT 1 chr5:128405153-128405212 ( 28) TTTCCTTTTTTGTTTTTTAAAGATGGAGTCT 1 chr8:139432147-139432237 ( 11) TTTATTTTTTTCTTGTTTTGAGATGGAATCT 1 chr8:26128417-26128466 ( 18) TTTTGTTTTTTTGTTTTTTGAAACAGTCTCT 1 chrX:131711692-131711777 ( 44) TTTTTCTTTTCTTTTTTTTGAGCCCGACTCT 1 chr17:17955638-17955692 ( 2) CTTCTTTGTTGTTTTTTAAGAGATGGAGTCT 1 chr5:59771381-59771427 ( 15) TCTTTCTTTCCTTCTTTTTGAGATGGAGTCT 1 chr12:112217984-11221803 ( 2) TATTATTTTTTTATTTTTTGAGACAGTCTCA 1 chrX:120631889-120631975 ( 54) ATTTTTTGTATTTTTAGTAGAGACGGGGTTT 1 chr12:53090066-53090165 ( 63) GGTGTTTTTGGTTTTTTTTGAGATGGAGTCT 1 chr11:108557206-10855726 ( 2) TTGTTTGTTTGCTTGTTTTGAGATGGAGTCT 1 chr8:65672674-65672720 ( 4) TTTTTTAATATTTTTAGTAGAGATGGGGTTT 1 chr16:23278413-23278463 ( 1) TTTTGTTTTGCTTTGTTTTGAGACAGTCTCA 1 chr19:29394500-29394582 ( 8) TATTTTTTCTTTTTTTGTGGAGTCTTGCTCT 1 chr9:107429321-107429358 ( 6) AATTTTTGTATTTTTAGTAGAGACAGGGTTT 1 chr20:45773008-45773059 ( 20) AATTTTTGTATTTTTAGTAGAGACAGGGTTT 1 chr10:49966144-49966201 ( 27) TTTCATTTTATTTCATTTAGAGATGAAGACT 1 chr17:47647145-47647198 ( 1) TTTCTTTTTTTTTGAAATGGAGTCTTGCTCT 1 chrX:114001152-114001246 ( 12) TATTTATTTATTCATTTATGAGATGGGGTCT 1 chr7:23443425-23443465 ( 1) ATTTTTGTATATTTTAGTAGAGACGGGGTTT 1 chrX:89218228-89218284 ( 25) TGTTTTATTTATTTATTTTGAGACAATCTCA 1 chr7:27446622-27446686 ( 6) TTTTAGTTTTTAGTTTTTGGGGATGGAGTCT 1 chr2:108724938-108724978 ( 9) TTTTTTTTTAATTCAGATGGAGTCTCACTCT 1 chrX:21979901-21979946 ( 15) TTTTTTTTTTTTTTTGAGACATTCTCGCTCT 1 chr20:56056570-56056620 ( 5) TTTGTTTGTTTTTGAAATGGAGTCTCGCTCT 1 chr14:23018514-23018574 ( 4) TTTCTTTTTTTTTGAGATGGAGTGTCGCTCT 1 chr10:35141117-35141164 ( 2) TATTTTTTATTTTTTGAGACAGTCTCACTCT 1 chr16:30681382-30681449 ( 27) TATTTTACATATATATTTTGAGCCGGAGTCT 1 chr2:11171409-11171458 ( 19) TTTATTTATTTATTTATGACAGTCTCACTCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 31 n= 14214 bayes= 10.2578 E= 3.8e-263 -130 -208 -366 174 -81 -208 -267 163 -1229 -267 -366 193 -262 -50 -167 151 -203 -208 -208 174 -262 -208 -267 181 -203 -1229 -267 187 -262 -366 -134 177 -203 -366 -1229 190 -81 -267 -167 159 -130 -208 -167 163 -262 -208 -366 184 -262 -208 -267 181 -362 -167 -134 170 -81 -366 -167 163 -62 -208 -167 151 -103 -366 -108 159 -262 -366 -208 184 -16 -366 -86 133 -203 -167 158 -130 193 -366 -366 -362 -162 -366 176 -262 170 -267 -1229 -62 -362 109 -267 70 -62 -366 133 -45 -162 -108 154 -203 133 -1229 3 -103 -362 33 133 -362 -362 -366 -1229 196 -1229 182 -1229 -130 -130 -366 -1229 184 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 31 nsites= 50 E= 3.8e-263 0.100000 0.060000 0.020000 0.820000 0.140000 0.060000 0.040000 0.760000 0.000000 0.040000 0.020000 0.940000 0.040000 0.180000 0.080000 0.700000 0.060000 0.060000 0.060000 0.820000 0.040000 0.060000 0.040000 0.860000 0.060000 0.000000 0.040000 0.900000 0.040000 0.020000 0.100000 0.840000 0.060000 0.020000 0.000000 0.920000 0.140000 0.040000 0.080000 0.740000 0.100000 0.060000 0.080000 0.760000 0.040000 0.060000 0.020000 0.880000 0.040000 0.060000 0.040000 0.860000 0.020000 0.080000 0.100000 0.800000 0.140000 0.020000 0.080000 0.760000 0.160000 0.060000 0.080000 0.700000 0.120000 0.020000 0.120000 0.740000 0.040000 0.020000 0.060000 0.880000 0.220000 0.020000 0.140000 0.620000 0.060000 0.080000 0.760000 0.100000 0.940000 0.020000 0.020000 0.020000 0.080000 0.020000 0.860000 0.040000 0.800000 0.040000 0.000000 0.160000 0.020000 0.540000 0.040000 0.400000 0.160000 0.020000 0.640000 0.180000 0.080000 0.120000 0.740000 0.060000 0.620000 0.000000 0.260000 0.120000 0.020000 0.320000 0.640000 0.020000 0.020000 0.020000 0.000000 0.960000 0.000000 0.900000 0.000000 0.100000 0.100000 0.020000 0.000000 0.880000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTTTTTTTTTTTTTTTTGAGAYGGASTCT MEME-10 regular expression -------------------------------------------------------------------------------- TTTTTTTTTTTTTTTTTT[TA]GAGA[CT]GG[AG][GC]TCT -------------------------------------------------------------------------------- Time 2030.61 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr1:113728031-113728089 5.08e-22 20_[+3(4.81e-14)]_15 chr9:96974518-96974556 7.91e-12 [+8(9.22e-13)]_17 chr18:79172467-79172522 2.68e-24 12_[+5(7.21e-15)]_14 chr7:5202697-5202735 7.08e-14 [+8(2.38e-13)]_17 chr10:124905736-12490579 1.15e-23 11_[+5(1.39e-13)]_14 chr1:8279803-8279863 1.06e-18 31_[-9(1.31e-13)]_7 chr3:172706123-172706168 6.92e-29 4_[+5(2.09e-16)]_12 chr19_GL949746v1_alt:803 8.17e-29 38_[+2(5.67e-14)]_23 chr16:23634709-23634761 4.19e-30 9_[+5(9.14e-16)]_14 chr7:75754380-75754424 7.36e-01 44 chr7:51381050-51381150 9.76e-24 41_[+3(2.06e-09)]_2_[-10(4.17e-10)]_\ 3 chr11:14613249-14613287 3.04e-01 38 chr2:204131125-204131225 1.35e-33 42_[+9(6.65e-14)]_10_[+6(4.83e-14)]_\ 4 chr1:224423949-224423995 5.53e-26 14_[-5(2.07e-14)]_3 chr2_KI270894v1_alt:1025 2.94e-30 [+3(7.88e-12)]_2_[+6(2.95e-13)]_4 chr3:44468975-44469021 1.57e-24 14_[-5(7.03e-13)]_3 chr11:58565154-58565221 8.04e-23 14_[-5(3.32e-12)]_24 chr4:94186474-94186534 1.21e-43 4_[-6(4.83e-14)]_2_[-3(4.81e-14)]_9 chr17:64433716-64433771 2.63e-18 3_[+3(2.51e-13)]_8_[-1(1.72e-07)]_1 chr2:241222274-241222310 6.60e-05 5_[-7(1.90e-12)]_11 chr12:45079332-45079384 1.08e-22 1_[-6(1.09e-12)]_2_[-3(4.81e-14)]_4 chr4:69140765-69140800 5.29e-07 4_[-7(2.84e-12)]_11 chr1:19815527-19815614 3.23e-35 12_[+10(1.20e-14)]_6_[-9(2.62e-09)]_\ 16 chr11:18561851-18561913 4.45e-34 3_[+9(6.65e-14)]_10_[+6(1.04e-12)]_\ 5 chr22:31032439-31032508 1.41e-21 [-6(2.07e-12)]_10_[-9(5.76e-13)]_15 chr7:27446622-27446686 1.02e-25 5_[+10(6.90e-10)]_2_[-3(3.13e-13)]_\ 3 chr20:30258090-30258135 1.79e-28 13_[-5(1.16e-14)]_3 chr11:84756326-84756387 7.97e-25 14_[-5(4.01e-14)]_18 chr8:13070272-13070314 2.57e-27 5_[+5(1.62e-12)]_8 chr20:45773008-45773059 5.77e-11 19_[+10(2.72e-10)]_1 chr14:73389611-73389651 3.85e-11 2_[+8(6.15e-12)]_17 chr4:154128916-154128970 3.58e-24 1_[+10(4.79e-13)]_22 chr6_GL000253v2_alt:1494 5.49e-05 11_[+7(4.73e-11)]_4 chr1:29129818-29129872 1.75e-27 13_[+5(3.45e-15)]_12 chr2:122313535-122313615 3.33e-40 7_[+9(1.31e-13)]_9_[-10(6.25e-15)]_\ 11 chr20:3067787-3067843 5.09e-15 3_[+3(1.59e-07)]_10_[-1(1.02e-08)] chr2:147653140-147653190 2.30e-34 18_[-10(2.07e-16)]_1 chr16:28546563-28546599 2.68e-02 12_[+7(4.76e-08)]_4 chr6:44319581-44319649 9.22e-05 1_[-9(1.18e-11)]_45 chr12:119943676-11994373 7.77e-28 19_[+5(2.78e-14)]_13 chr8:144771256-144771316 1.40e-26 19_[+5(2.11e-13)]_12 chrX:140367452-140367504 3.35e-24 18_[+4(2.81e-12)]_14 chr6:142739169-142739227 7.64e-14 10_[-4(5.96e-09)]_4_[-3(7.61e-09)]_\ 1 chr9:36348228-36348263 8.00e-09 8_[+7(8.72e-10)]_7 chr13:35940257-35940309 5.74e-20 22_[+6(2.91e-12)]_8 chr14:102314036-10231413 3.61e-36 28_[+9(1.28e-11)]_11_[+6(5.91e-13)]_\ 17 chr17:1162742-1162789 2.71e-21 14_[-5(2.30e-14)]_4 chr17:80158841-80158898 3.09e-22 12_[-6(4.70e-12)]_23 chr6:162634347-162634387 3.32e-11 12_[+7(1.67e-11)]_8 chr15_KI270905v1_alt:420 2.41e-36 27_[+3(1.64e-14)]_2_[+6(2.45e-13)]_\ 4 chr14:22991245-22991299 2.79e-33 13_[-5(3.42e-16)]_12 chr3:49746684-49746721 3.26e-04 5_[-7(8.69e-11)]_12 chr19:52371349-52371398 2.31e-24 [+10(9.21e-15)]_18 chr14:83519808-83519849 6.03e-01 41 chr7:136913625-136913658 1.70e-05 7_[-4(8.06e-11)]_6 chr11:1058630-1058688 7.91e-36 1_[+9(2.28e-11)]_10_[+6(1.58e-12)]_\ 3 chrX:26996361-26996407 9.20e-34 3_[+5(2.38e-16)]_14 chr5:166076005-166076045 6.93e-12 12_[+7(9.67e-13)]_8 chr22:42744535-42744577 3.61e-10 17_[-8(1.20e-11)]_4 chr5:130568362-130568409 2.96e-19 [+3(1.07e-11)]_2_[+6(2.07e-12)] chr10:54260295-54260330 7.36e-09 [-6(2.55e-11)]_13 chr12:121496899-12149693 7.44e-31 4_[+5(9.74e-17)]_4 chr1:10405474-10405539 1.15e-33 22_[+5(2.09e-16)]_14 chrY:10849719-10849797 6.15e-18 1_[+10(7.80e-05)]_2_[-3(1.73e-13)]_\ 21 chr4:67544986-67545067 1.37e-43 16_[+9(6.65e-14)]_10_\ [-10(1.21e-15)]_2 chr2:73809376-73809423 1.35e-34 13_[-5(1.12e-16)]_5 chr6:13280736-13280793 2.25e-37 14_[-5(3.74e-18)]_14 chr15:20100176-20100235 1.78e-29 [+10(1.05e-15)]_2_[-3(6.10e-07)]_3 chr16:66691221-66691262 3.18e-08 12_[+7(9.67e-13)]_9 chr13:85546443-85546529 9.79e-48 11_[+10(4.18e-14)]_2_[-3(4.81e-14)]_\ 19 chr12:7348900-7348951 1.31e-22 23_[-2(7.03e-13)]_6 chr7:138871988-138872039 1.60e-22 8_[-6(9.88e-13)]_21 chrY:18185964-18186064 8.41e-19 14_[-3(9.83e-06)]_38_[+8(2.98e-12)]_\ 4 chr10:97618406-97618445 1.70e-12 7_[-7(1.90e-12)]_12 chr13:38271546-38271624 9.47e-28 14_[-5(8.03e-15)]_35 chr22:41477064-41477100 9.24e-01 36 chr4:42174286-42174331 1.56e-08 1_[+3(8.83e-12)]_21 chr11:101426897-10142693 1.62e-05 4_[-7(1.90e-12)]_12 chr2:63795707-63795758 2.44e-28 9_[+5(2.42e-15)]_13 chr11:25583125-25583176 3.45e-13 9_[+5(1.35e-10)]_13 chr5:160204066-160204105 9.89e-01 39 chr5_GL339449v2_alt:3964 2.53e-10 12_[+9(1.22e-12)]_14 chr5:7958864-7958905 9.95e-37 4_[+5(7.37e-18)]_8 chr17:62143600-62143661 3.72e-11 2_[+1(8.50e-07)]_10_[-3(4.14e-10)]_\ 6 chr7:44616892-44616945 2.83e-10 21_[+3(1.77e-12)]_9 chr11:72937559-72937642 1.30e-25 40_[+5(1.81e-15)]_14 chrUn_GL000216v2:129508- 7.43e-33 22_[+5(1.45e-17)]_14 chr12:120428293-12042836 1.53e-48 14_[+3(4.81e-14)]_2_[-10(1.09e-13)]_\ 4 chr20:56056570-56056620 1.30e-18 16_[-4(3.24e-11)]_14 chr7:122023422-122023465 1.54e-22 13_[-5(2.02e-15)]_1 chr5:76418558-76418610 2.07e-23 16_[+4(4.66e-11)]_16 chrX:114001152-114001246 9.95e-30 11_[+10(4.54e-10)]_10_\ [-9(2.32e-12)]_20 chr21:23783782-23783834 4.99e-22 9_[+5(7.56e-14)]_14 chr7:22476063-22476112 3.98e-17 12_[+5(3.33e-11)]_8 chr18:62669284-62669334 1.86e-16 7_[-6(6.42e-11)]_21 chr6:166377140-166377203 2.04e-23 4_[+1(3.44e-12)]_10_[-3(7.63e-13)]_\ 6 chr22:32970497-32970569 4.76e-53 14_[+3(3.22e-14)]_2_[-10(2.07e-16)]_\ 2 chr11:108557206-10855726 8.61e-18 1_[+10(4.55e-11)]_24 chr17_KI270862v1_alt:502 5.17e-02 3_[-2(6.90e-07)]_23 chr8:30747816-30747867 4.74e-36 14_[-5(7.37e-18)]_8 chr4:62515052-62515099 2.35e-34 5_[+5(2.90e-17)]_13 chr10:80123557-80123592 2.56e-06 12_[+7(2.84e-12)]_3 chr6_GL000253v2_alt:5971 5.05e-22 19_[-4(1.90e-12)]_4 chr13:21067053-21067089 1.70e-04 5_[-7(9.31e-12)]_11 chr11:26586355-26586397 2.02e-37 1_[+10(1.65e-19)]_10 chr15_KI270849v1_alt:158 5.56e-01 31 chr7:73780920-73780962 4.26e-27 12_[-5(3.74e-18)]_1 chr22_KI270876v1_alt:107 1.57e-37 8_[+5(3.74e-18)]_14 chr13:20871509-20871546 2.52e-13 12_[-8(4.68e-13)]_4 chr18:9273785-9273839 2.09e-17 11_[+5(5.71e-11)]_14 chr13:41374141-41374194 7.48e-21 [+1(8.14e-11)]_33 chr1:23136224-23136285 3.97e-36 14_[-5(1.10e-17)]_18 chr4:9372531-9372577 3.56e-28 3_[+5(8.77e-15)]_14 chr4:128104035-128104102 2.67e-36 24_[+5(1.10e-17)]_14 chr2:200856368-200856420 5.43e-30 9_[+5(1.81e-15)]_14 chr14_KI270726v1_random: 1.82e-13 4_[+3(3.13e-08)]_2_[-10(2.20e-08)]_\ 1 chr19:32831118-32831204 1.33e-08 31_[+3(7.24e-05)]_12_[-1(1.28e-06)] chr12:94346386-94346463 3.31e-39 24_[+3(4.81e-14)]_10_[-1(5.51e-12)] chr2:43015971-43016010 8.68e-11 12_[+7(9.67e-13)]_7 chr19:16732623-16732674 5.04e-32 19_[-10(1.53e-16)]_1 chr6:77444481-77444527 2.21e-37 3_[+5(1.10e-17)]_14 chr15:24352756-24352797 4.95e-34 9_[-10(2.61e-18)]_1 chr7:75406549-75406587 3.93e-12 15_[-8(3.43e-12)]_2 chr22_KI270876v1_alt:4-6 4.64e-20 13_[+5(4.75e-13)]_14 chr3:69414549-69414589 3.54e-01 40 chr5:140626228-140626287 2.43e-37 5_[-6(4.83e-14)]_2_[-3(2.90e-12)]_7 chr20:63990333-63990385 1.63e-25 9_[+5(1.16e-13)]_14 chr15:57021373-57021446 2.09e-36 11_[-5(3.74e-18)]_33 chr20:24182411-24182445 5.84e-14 10_[-8(2.38e-13)]_3 chr9:69246338-69246392 4.71e-32 11_[+5(1.05e-15)]_14 chr5:176993202-176993251 1.24e-07 22_[-2(1.73e-10)]_5 chr9:5842392-5842454 7.40e-21 3_[+3(6.34e-11)]_12_[-1(5.51e-12)]_\ 4 chr11:66357527-66357566 7.00e-11 1_[+8(5.47e-12)]_17 chr10:73111354-73111454 1.31e-45 18_[+10(6.77e-14)]_2_[-3(1.64e-14)]_\ 26 chr15_KI270850v1_alt:401 3.04e-04 48_[+3(9.83e-06)]_29 chr15:21106439-21106492 4.43e-28 6_[-6(4.39e-13)]_2_[-3(5.09e-11)] chr16:73861713-73861748 2.65e-06 11_[+7(2.84e-12)]_4 chr1:69444669-69444758 3.34e-54 11_[+10(3.24e-19)]_2_[-3(1.73e-13)]_\ 22 chr5:108053451-108053513 1.27e-28 13_[+3(1.08e-10)]_2_[+6(2.95e-13)]_\ 2 chrY:2253495-2253595 6.74e-15 10_[-7(3.48e-05)]_14_[+9(1.22e-12)]_\ 14_[-1(1.30e-05)] chrX:89218228-89218284 2.03e-18 1_[+3(5.17e-10)]_[-10(6.90e-10)]_1 chr2:166033429-166033493 3.68e-35 14_[-5(1.10e-17)]_21 chrY:10791474-10791525 3.57e-08 7_[-3(5.44e-10)]_21 chr19:43590153-43590220 4.99e-33 11_[+3(6.05e-09)]_2_[-10(7.44e-13)] chr8:101185018-101185079 6.55e-48 3_[+10(1.65e-19)]_2_[-3(1.64e-14)]_\ 2 chr14:100235442-10023548 4.39e-02 38 chr5:27968235-27968286 2.65e-28 1_[+10(2.18e-13)]_19 chr9:13407554-13407595 4.54e-32 9_[-6(4.83e-14)]_10 chr9:124123135-124123189 1.37e-26 14_[-5(1.50e-12)]_11 chr6:134803592-134803661 1.74e-09 2_[-8(4.68e-13)]_46 chr15:75096746-75096782 2.29e-03 4_[-7(8.72e-10)]_12 chr6:89638991-89639040 9.31e-07 14_[-5(3.27e-07)]_6 chr14:36352994-36353034 4.33e-09 12_[+7(3.34e-11)]_8 chr12:68408406-68408432 8.43e-01 26 chr7:13301035-13301079 1.18e-28 1_[+10(4.78e-15)]_12 chr2:96201599-96201637 4.44e-11 17_[-8(6.99e-13)] chr5:52669119-52669170 6.74e-28 20_[-10(1.20e-14)] chr7:94572182-94572234 6.78e-09 21_[-7(6.79e-11)]_11 chr22:43089863-43089956 7.40e-38 14_[-5(3.74e-18)]_50 chr10:95834881-95834943 1.39e-39 4_[+3(4.81e-14)]_2_[-10(8.59e-14)]_\ 2 chr6:106982461-106982527 4.53e-11 8_[-9(3.76e-12)]_36 chr13:23472176-23472224 5.18e-27 17_[-10(2.16e-12)] chr3:22113737-22113796 5.72e-01 59 chr4:1616482-1616547 1.81e-18 20_[+4(4.66e-11)]_2_[-1(2.17e-06)]_\ 3 chr12:55062773-55062838 3.10e-40 15_[+3(3.22e-14)]_2_[+6(9.82e-14)]_\ 3 chr10:49966144-49966201 1.48e-19 1_[+3(3.60e-08)]_2_[-10(4.17e-10)] chr12:31957882-31957923 4.45e-06 3_[+8(1.47e-08)]_17 chr6:113102088-113102129 9.17e-06 13_[-3(3.06e-10)]_5 chr8:69213260-69213324 2.69e-43 4_[+10(1.65e-19)]_2_[-3(6.31e-12)]_\ 4 chr17:60699785-60699883 7.68e-53 40_[+3(1.64e-14)]_2_[-10(1.65e-19)]_\ 2 chr7:98644972-98645027 6.72e-25 1_[+10(3.27e-14)]_23 chr17:67510546-67510601 9.68e-38 12_[+5(3.74e-18)]_14 chrX:7309013-7309080 6.40e-19 [+1(1.02e-08)]_8_[-3(2.27e-09)]_16 chr15:76104536-76104619 4.27e-36 14_[-5(3.74e-18)]_40 chr6:65674387-65674477 9.40e-50 26_[+3(1.17e-10)]_2_[-10(1.65e-19)]_\ 8 chr16:73788885-73788934 2.97e-36 17_[+5(1.10e-17)]_3 chr8:3985756-3985806 8.96e-28 7_[-6(4.83e-14)]_21 chr16:30496977-30497011 9.49e-06 12_[+7(2.84e-12)]_2 chr7:130413324-130413362 4.71e-13 12_[+7(1.90e-12)]_6 chr2:164852407-164852442 3.41e-05 3_[-7(5.62e-12)]_12 chr11:107916376-10791641 6.39e-33 4_[-5(7.82e-16)]_9 chr1:2086355-2086405 3.87e-24 7_[+5(2.11e-13)]_14 chr2:72693287-72693367 1.86e-40 6_[-6(3.02e-12)]_2_[-3(3.13e-13)]_5_\ [-2(1.44e-05)] chr6:38698657-38698701 1.76e-35 1_[+10(1.65e-19)]_12 chr17_KI270861v1_alt:150 1.10e-07 23_[-2(3.85e-10)]_2 chr19:23237662-23237738 2.84e-35 11_[+9(1.22e-12)]_10_\ [-10(5.35e-13)]_2 chr8:134473562-134473592 5.94e-02 30 chr17:45615411-45615477 3.70e-40 1_[+9(5.76e-13)]_10_[+6(2.14e-11)]_\ 11 chr7:93701664-93701707 3.88e-24 1_[+10(3.19e-15)]_11 chr10:71490953-71491035 1.50e-37 19_[+3(2.51e-13)]_2_[-10(2.16e-12)]_\ 7 chr10:36673517-36673557 1.01e-07 2_[-2(5.67e-14)]_16 chr5:69271926-69271972 1.52e-15 1_[+10(9.23e-13)]_14 chr11:30708982-30709039 3.27e-19 5_[+1(5.95e-09)]_7_[-3(4.08e-13)]_2 chrX:41304494-41304530 1.20e-04 11_[+7(7.49e-12)]_5 chr21:14660143-14660189 2.85e-21 21_[+6(4.83e-14)]_3 chr5:140468230-140468283 9.40e-29 21_[+6(9.82e-14)]_10 chr17:18739045-18739092 5.56e-36 14_[-5(7.37e-18)]_4 chr7:140013025-140013105 3.15e-54 22_[+3(3.22e-14)]_2_[-10(2.97e-17)]_\ 2 chr5:178166687-178166752 2.85e-26 11_[+3(1.83e-10)]_2_[+6(7.67e-08)]_\ 7 chr7:68826557-68826604 2.40e-34 5_[+5(4.36e-17)]_13 chr17:30365199-30365230 9.69e-01 31 chr14:77178626-77178705 2.72e-39 5_[-6(2.91e-12)]_2_[-3(1.64e-14)]_5_\ [-2(9.33e-05)] chr12:18867855-18867916 1.81e-22 [+1(6.03e-08)]_10_[-3(4.81e-14)]_8 chr16:25193914-25193949 1.21e-04 3_[-7(3.34e-11)]_12 chr3:148046351-148046430 5.85e-35 8_[-5(1.10e-17)]_42 chrX:487380-487416 5.91e-06 4_[-7(1.90e-12)]_12 chr2:8995165-8995205 9.37e-01 40 chr7:23443425-23443465 4.65e-11 [+10(6.90e-10)]_9 chr3:65916690-65916737 5.84e-27 4_[+5(7.56e-14)]_14 chr1:93116259-93116320 5.20e-06 30_[-7(3.17e-08)]_11 chr22:50513326-50513371 1.81e-26 4_[-5(1.41e-16)]_12 chr1:112976130-112976205 2.55e-27 23_[+3(1.17e-10)]_2_[+6(1.47e-09)]_\ 5 chr22:39699259-39699320 9.72e-36 18_[+5(1.10e-17)]_14 chrX:131711692-131711777 5.67e-28 18_[+3(1.07e-11)]_2_[-10(6.01e-12)]_\ 11 chr1:91959119-91959192 7.47e-26 13_[+9(3.87e-13)]_18_[-1(1.02e-08)] chr11:31075798-31075846 3.93e-24 5_[+5(3.74e-13)]_14 chr11:14361308-14361345 4.68e-05 5_[-7(1.90e-12)]_12 chr22:21782558-21782620 6.96e-04 21_[+3(9.83e-06)]_18 chr9:109920758-109920791 1.04e-03 12_[+7(8.72e-10)]_1 chr17:63848448-63848485 7.15e-01 37 chr13:41987103-41987165 1.30e-35 19_[+5(1.10e-17)]_14 chr7:149241941-149241975 8.39e-06 2_[-7(7.49e-12)]_12 chr6_GL000250v2_alt:1437 1.17e-39 11_[+3(9.74e-12)]_2_[-10(3.19e-15)] chr20:36292489-36292529 7.09e-12 2_[+8(2.98e-12)]_17 chr6:147907232-147907271 2.01e-37 6_[-5(3.74e-18)]_4 chr14:21600669-21600716 1.01e-27 14_[-5(7.21e-15)]_4 chr1:225175701-225175782 1.27e-34 1_[+10(5.35e-13)]_2_[-3(1.14e-08)]_\ 24 chr10:38214526-38214573 6.08e-30 1_[+10(7.50e-18)]_15 chr2:61999930-62000000 3.86e-15 1_[-6(8.85e-06)]_2_[-3(1.09e-09)]_\ 22 chr11:33908392-33908432 4.00e-10 2_[+8(5.47e-12)]_17 chr2:190816065-190816149 1.21e-56 [+1(3.22e-09)]_1_[+10(1.65e-19)]_2_\ [-3(1.64e-14)]_7 chr1:10327061-10327100 3.50e-10 17_[-8(5.61e-11)]_1 chr2:231505981-231506051 6.27e-14 17_[+9(6.56e-12)]_8_[+6(3.55e-06)]_\ 1 chr19:29394500-29394582 1.24e-22 5_[+1(6.79e-09)]_9_[-3(1.98e-10)]_\ 25 chr9:137414858-137414904 1.25e-22 16_[-4(9.37e-13)]_10 chr9:136449584-136449635 1.23e-20 8_[+5(3.65e-14)]_14 chr11:126974924-12697497 4.99e-12 21_[-3(4.81e-14)]_3 chr2:96172407-96172444 6.49e-07 9_[+4(2.81e-12)]_8 chr12:71412720-71412797 1.52e-43 7_[-6(1.29e-12)]_2_[-3(1.64e-14)]_\ 23 chr14:67194955-67195000 8.38e-26 6_[+5(7.56e-14)]_10 chr8:76905205-76905254 4.57e-28 12_[-5(6.28e-14)]_8 chr8:138629021-138629110 1.48e-25 46_[+5(3.06e-15)]_14 chr6:134137907-134137977 7.52e-22 18_[+3(5.44e-10)]_2_[+6(7.19e-09)]_\ 5 chr1:203533508-203533552 7.88e-25 1_[+5(2.38e-16)]_14 chr1:37961730-37961779 1.47e-13 27_[-1(8.14e-11)]_2 chr1:228198165-228198231 7.77e-50 8_[-6(4.83e-14)]_2_[-3(1.64e-14)]_\ 11 chr8_KI270813v1_alt:1014 5.96e-27 10_[-10(5.47e-15)]_1 chr4:70191404-70191433 2.57e-02 2_[-6(3.82e-05)]_5 chr18:59749448-59749489 2.62e-10 12_[+7(9.67e-13)]_9 chr7:1128041-1128107 2.07e-05 6_[-9(1.36e-12)]_38 chr7:120693903-120693947 8.79e-14 14_[-5(1.78e-11)]_1 chr8:75242779-75242825 7.14e-20 15_[-3(3.22e-14)]_8 chrX:23665619-23665670 3.07e-27 1_[-5(7.37e-18)]_21 chr10:103382504-10338255 7.07e-01 47 chr10:42272689-42272736 3.08e-17 27_[-1(1.52e-11)] chr4:139001569-139001621 1.50e-18 5_[+3(4.81e-14)]_2_[+6(9.85e-08)] chr6_GL000255v2_alt:1991 1.46e-43 13_[+3(1.64e-14)]_2_[+6(4.83e-14)]_\ 5 chr21:44081516-44081559 6.66e-27 [+5(3.74e-18)]_14 chr7:134412397-134412455 1.76e-10 26_[-7(7.17e-09)]_12 chr1:1546510-1546554 4.59e-15 14_[-5(1.94e-13)]_1 chr18:11794789-11794829 9.82e-14 16_[-8(2.38e-13)]_3 chr17_GL000258v2_alt:127 3.30e-21 2_[+5(1.21e-11)]_3 chr20:21588922-21588958 2.07e-04 5_[-7(1.94e-11)]_11 chr20:34340082-34340155 5.50e-38 2_[+9(2.70e-12)]_10_[-10(9.23e-13)]_\ 8 chr10:116586435-11658646 8.59e-01 30 chr2:95644184-95644231 2.61e-01 47 chr2_KI270894v1_alt:1015 1.73e-13 [+3(5.46e-09)]_2_[+6(2.14e-08)]_1 chr1:159962360-159962419 1.23e-24 14_[-5(1.30e-14)]_16 chr15:42553553-42553606 2.80e-22 10_[+5(4.06e-13)]_14 chr6_GL000250v2_alt:5972 5.05e-22 19_[-4(1.90e-12)]_4 chr8:7346491-7346537 2.23e-23 3_[+5(8.25e-14)]_14 chrY:3390565-3390610 1.58e-37 2_[+5(1.10e-17)]_14 chr11:75723648-75723684 2.35e-08 9_[-7(2.92e-09)]_7 chr4:10472999-10473056 2.16e-36 [+3(5.49e-11)]_2_[-10(1.05e-15)]_1 chr20:43656945-43657017 6.96e-48 14_[+3(3.22e-14)]_2_[-10(1.75e-14)]_\ 2 chr1:224149272-224149320 1.60e-14 3_[+1(5.51e-12)]_25 chr2:15515458-15515536 1.18e-10 23_[+3(6.76e-07)]_8_[-1(1.72e-07)]_\ 4 chr1:26304402-26304441 1.13e-11 17_[-8(3.43e-12)]_1 chr11:77709872-77709916 8.39e-26 1_[+5(7.37e-18)]_14 chr7:99496308-99496354 1.02e-35 4_[+5(1.45e-17)]_13 chr14:34937821-34937861 4.30e-07 8_[-2(9.19e-09)]_10 chr16:18856832-18856882 1.39e-17 [+3(3.22e-14)]_6_[-1(2.27e-06)]_1 chr1:150074623-150074682 9.72e-29 21_[+5(3.17e-13)]_9 chr1:77766286-77766342 6.42e-21 14_[+5(9.93e-12)]_13 chr9:136889219-136889262 5.35e-28 6_[-6(9.82e-14)]_15 chr16:14648853-14648931 1.66e-39 15_[-6(1.76e-11)]_2_[-3(1.64e-14)]_\ 16 chr4:54260169-54260241 7.61e-45 8_[+3(4.81e-14)]_2_[-10(1.20e-11)]_\ 8 chr6:154764272-154764318 3.01e-33 [+10(1.78e-16)]_15 chr1:212520135-212520180 2.81e-38 13_[-10(1.65e-19)]_1 chr9:6610137-6610185 8.46e-14 23_[-2(3.87e-09)]_3 chr2:232882770-232882821 3.42e-01 8_[-2(9.33e-05)]_21 chr15:20099387-20099434 1.36e-19 [-6(1.30e-09)]_2_[-3(3.22e-14)] chr6:28751466-28751504 9.31e-14 11_[+7(2.84e-12)]_7 chr21:31521806-31521870 2.49e-17 [+1(2.27e-06)]_10_[-9(3.26e-12)]_12 chr2:96225903-96225959 2.67e-30 3_[-6(9.82e-14)]_2_[-3(3.22e-14)]_6 chr1:52848600-52848628 2.44e-03 5_[-6(1.82e-05)]_1 chrX:982101-982153 5.08e-26 14_[-5(2.42e-15)]_9 chr18:49499944-49499998 4.52e-23 20_[-3(1.64e-14)]_11 chr17:64185569-64185631 2.73e-33 8_[+3(7.93e-14)]_10_[-1(4.52e-09)]_\ 1 chr16:19485179-19485225 7.27e-24 5_[+2(4.69e-12)]_19 chr19:52567418-52567455 3.39e-22 1_[+10(4.78e-15)]_5 chr1:75530058-75530104 1.28e-12 22_[-3(4.74e-12)]_1 chrY:18923874-18923913 1.04e-38 7_[-10(1.65e-19)]_1 chr3:160849732-160849832 5.54e-08 6_[-6(1.50e-05)]_2_[-3(3.06e-05)]_\ 47 chr9:94413596-94413677 7.13e-42 19_[+9(6.65e-14)]_20_[-1(6.80e-13)] chr5:177906713-177906763 3.52e-36 13_[-5(1.45e-17)]_8 chr8:65672674-65672720 1.31e-11 3_[+10(8.63e-11)]_12 chr5:121480356-121480450 3.83e-41 29_[+3(5.78e-13)]_2_[+6(5.91e-13)]_\ 18 chr11:32481907-32482001 1.33e-33 14_[+9(8.84e-09)]_10_\ [-10(1.36e-14)]_17 chr4:162729251-162729306 1.49e-21 24_[-7(1.94e-11)]_11 chr10:68856172-68856207 1.85e-03 5_[-7(9.88e-10)]_10 chr1:241963627-241963671 2.61e-19 [+5(2.93e-13)]_15 chr20:35783999-35784040 3.41e-11 10_[-7(9.31e-12)]_11 chr10:35141117-35141164 4.48e-12 [+1(1.26e-09)]_27 chr14:101669054-10166912 1.20e-32 6_[+3(5.79e-06)]_1_[-10(1.07e-16)]_\ 13 chr12:48102767-48102830 8.53e-46 6_[+3(4.25e-13)]_2_[-10(1.65e-19)]_\ 1 chr7:1129293-1129359 3.45e-05 6_[-9(1.36e-12)]_38 chr4:137696076-137696143 7.02e-55 1_[+9(6.65e-14)]_12_[-10(1.65e-19)]_\ 1 chr1:84500000-84500063 5.63e-02 4_[+3(1.78e-05)]_36 chr13:48619663-48619714 1.91e-29 8_[+5(6.45e-16)]_14 chr10:28541415-28541515 5.42e-24 7_[+10(7.62e-14)]_7_[-9(1.18e-11)]_\ 33 chr8:5285914-5285964 1.74e-32 14_[-5(9.14e-16)]_7 chr7:10942683-10942743 2.73e-36 3_[-6(1.19e-12)]_2_[-3(1.43e-13)]_\ 10 chr12:53090066-53090165 3.28e-41 37_[+3(3.22e-14)]_2_[-10(1.95e-11)]_\ 6 chr20:56104155-56104198 1.29e-35 [+10(1.65e-19)]_12 chr1:40467637-40467686 9.26e-27 6_[+5(2.01e-12)]_14 chr5:134066104-134066158 6.97e-24 10_[-6(9.88e-13)]_22 chr19:29383075-29383108 9.53e-01 33 chr16:23278413-23278463 8.13e-10 [+10(1.24e-10)]_19 chr14:23018514-23018574 2.07e-37 6_[-6(8.97e-10)]_2_[-3(4.08e-13)]_7 chr15:23065974-23066011 9.38e-02 5_[-7(8.10e-07)]_12 chr12:114552722-11455276 5.18e-11 16_[-3(5.09e-11)]_2 chr6:62033744-62033776 9.39e-01 32 chr3:160727596-160727629 4.15e-05 12_[+7(7.49e-12)]_1 chr17:58662100-58662140 1.55e-12 8_[-7(9.67e-13)]_12 chr3:194625446-194625490 4.40e-31 1_[+10(3.77e-16)]_12 chr11:63527785-63527819 4.48e-05 12_[+7(1.90e-12)]_2 chr19:7022368-7022426 1.97e-32 3_[+3(4.18e-11)]_2_[+6(1.58e-12)]_8 chr7:56174189-56174246 5.90e-17 19_[-8(1.96e-10)]_17 chr14:54461703-54461751 9.57e-21 10_[+5(1.29e-11)]_9 chr10:114144389-11414444 1.66e-26 20_[+6(9.82e-14)]_10 chr1:91966018-91966089 1.76e-41 11_[+10(3.65e-15)]_2_[-3(3.22e-14)]_\ 4 chr1:149088736-149088800 1.90e-37 14_[-5(3.74e-18)]_21 chr10:6210815-6210882 1.52e-07 9_[+10(4.87e-06)]_2_[-3(2.34e-05)]_\ 2 chr7:87626042-87626073 6.38e-01 31 chr16:87362478-87362529 7.39e-10 7_[-4(2.69e-11)]_24 chr3_KI270782v1_alt:7140 1.29e-24 17_[+5(3.65e-14)]_9 chr3:180884135-180884176 1.34e-13 17_[-8(2.38e-13)]_3 chr7:14379888-14379933 2.98e-33 2_[+5(1.81e-17)]_14 chr12:128044026-12804408 1.17e-38 4_[+3(3.22e-14)]_2_[+6(4.83e-14)]_6 chr19:3157398-3157446 1.34e-18 14_[-5(1.62e-12)]_5 chr2:42395419-42395463 2.04e-26 14_[-5(1.10e-17)]_1 chr7:66581158-66581213 1.00e-32 12_[+5(9.14e-16)]_14 chr2:33429600-33429659 4.27e-30 8_[-6(1.04e-12)]_2_[-3(5.68e-10)]_4 chr17:62148589-62148639 2.41e-23 1_[+1(1.80e-11)]_29 chr9:85580396-85580442 1.16e-27 1_[+10(4.36e-16)]_14 chr16:29577724-29577789 7.44e-40 11_[+3(2.90e-12)]_2_[+6(9.82e-14)]_\ 7 chr3:123753471-123753542 6.03e-49 3_[+10(1.60e-15)]_2_[-3(2.51e-13)]_\ 12 chr6_GL000253v2_alt:3833 2.01e-44 12_[+10(1.65e-19)]_2_[-3(3.74e-11)] chr15:64879384-64879415 9.50e-01 31 chr8:81920262-81920306 1.62e-36 2_[+5(1.10e-17)]_13 chr18:71802314-71802386 9.95e-01 72 chr16:12797573-12797609 7.22e-06 12_[+7(2.22e-11)]_4 chr6_GL000255v2_alt:2533 1.65e-27 9_[-5(3.74e-18)]_1 chr7:44011812-44011883 5.33e-43 11_[+10(4.89e-17)]_2_[-3(1.43e-13)]_\ 4 chr9:94650427-94650485 1.08e-24 23_[-2(5.67e-14)]_13 chr11_KI270903v1_alt:195 3.88e-37 24_[-10(1.65e-19)]_1 chr1:13168271-13168323 8.21e-28 1_[+10(4.78e-15)]_20 chr14:20118458-20118504 6.94e-22 23_[-2(2.13e-11)]_1 chr19:41294066-41294112 2.78e-26 3_[+5(4.01e-14)]_14 chr16:74580927-74580992 2.53e-35 8_[+3(3.22e-14)]_2_[-10(1.75e-12)]_\ 1 chr3:49011422-49011479 1.54e-20 14_[+5(6.51e-13)]_14 chr3:65566820-65566896 1.15e-32 33_[+5(6.51e-17)]_14 chr2:208018916-208018959 6.64e-18 14_[-5(1.87e-12)] chr8:140594428-140594462 2.18e-05 2_[-7(1.90e-12)]_12 chr14:39152963-39152996 8.81e-14 7_[-2(5.67e-14)]_4 chr3:132298144-132298183 4.99e-08 [+1(1.28e-06)]_19 chr14:64517782-64517869 2.10e-29 3_[+1(6.80e-13)]_10_[-3(2.90e-12)]_\ 31 chr3:126698341-126698396 7.66e-26 14_[-5(1.60e-15)]_12 chr4:107658311-107658380 1.03e-31 6_[+3(8.83e-12)]_2_[-10(3.83e-13)]_\ 7 chr9:6547089-6547144 1.00e-25 13_[+5(3.34e-14)]_13 chr3:192357530-192357588 1.87e-25 6_[+3(7.88e-12)]_2_[+6(2.41e-12)]_5 chr13:113359368-11335940 4.48e-05 12_[+7(1.90e-12)]_2 chr3:109992967-109993004 8.25e-08 1_[+8(2.97e-08)]_15 chr19:5577274-5577349 8.65e-09 3_[+10(1.15e-08)]_2_[-3(9.83e-06)]_\ 16 chr9:121691459-121691536 1.24e-28 17_[+9(1.22e-12)]_9_[+6(2.07e-12)]_\ 7 chr19:18302870-18302924 6.55e-34 11_[+5(7.37e-18)]_14 chr6:37782199-37782235 3.52e-03 12_[+7(2.81e-08)]_4 chr8:64870025-64870066 3.04e-09 12_[+7(1.21e-11)]_9 chr2:61043214-61043314 2.43e-13 1_[-8(5.61e-11)]_39_[+3(9.83e-06)]_\ 16 chr4:96834091-96834136 3.65e-27 2_[+5(1.06e-13)]_14 chrX:1237898-1237935 4.76e-03 5_[-7(1.98e-09)]_12 chr2:201864649-201864700 6.20e-31 8_[+5(1.05e-15)]_14 chr6_GL000255v2_alt:2822 3.92e-28 13_[-5(2.30e-14)]_4 chr4:62514989-62515051 5.79e-36 4_[-6(1.38e-09)]_2_[-3(4.81e-14)]_\ 11 chr5:171688040-171688076 5.90e-06 11_[+7(9.67e-13)]_5 chr6_GL000252v2_alt:2534 1.65e-27 9_[-5(3.74e-18)]_1 chr12:123809000-12380904 6.66e-28 10_[+5(2.02e-15)]_6 chr8:26128417-26128466 3.73e-13 17_[-10(3.27e-12)]_1 chr8:85578464-85578517 4.27e-24 7_[-6(1.46e-13)]_24 chr1:149712698-149712755 1.24e-13 16_[+3(9.33e-13)]_18 chr22:21664993-21665028 3.07e-14 1_[+8(2.38e-13)]_13 chr17:4194053-4194086 1.54e-04 1_[-7(1.39e-11)]_12 chr16:3422497-3422532 9.17e-05 4_[-7(1.05e-09)]_11 chr10:114731599-11473163 2.76e-01 39 chr13:99605068-99605131 1.43e-43 3_[+3(1.64e-14)]_2_[-10(2.07e-16)]_\ 4 chr19:17044903-17044982 4.46e-06 12_[+7(2.28e-08)]_47 chr7:68829502-68829569 3.21e-39 2_[+3(1.07e-12)]_2_[-10(2.43e-16)]_\ 9 chr12:53722917-53722963 3.87e-15 24_[-1(6.80e-13)]_2 chr20:36886765-36886800 5.82e-12 8_[-7(1.90e-12)]_7 chr2:73770056-73770095 9.24e-14 16_[-8(2.38e-13)]_2 chr15:22995523-22995600 5.81e-39 7_[+9(5.86e-10)]_10_[-10(3.65e-15)]_\ 7 chr5:27837080-27837133 9.75e-23 26_[+6(2.91e-12)]_5 chr2:139680463-139680528 4.99e-10 [+1(1.28e-06)]_12_[-3(9.83e-06)]_10 chr3:4064680-4064722 3.89e-01 42 chr1:173676802-173676853 1.39e-37 20_[-10(3.24e-19)] chr4:6349581-6349681 6.54e-05 69_[+4(1.87e-06)]_11 chr11:71805012-71805056 8.88e-19 1_[+5(5.27e-14)]_14 chr4:56823052-56823117 2.14e-04 16_[+9(1.59e-06)]_27 chr11:32582265-32582314 1.45e-08 1_[-6(1.56e-10)]_26 chr17:5479455-5479526 8.03e-35 5_[+3(5.00e-13)]_2_[-10(3.65e-15)]_\ 10 chr7_KI270899v1_alt:4595 5.83e-16 22_[-3(4.38e-11)]_27 chr8:140609802-140609838 5.95e-05 11_[+7(3.16e-11)]_5 chr13:86558281-86558313 6.05e-05 12_[+7(5.62e-12)] chr6_GL000251v2_alt:2848 5.05e-22 19_[-4(1.90e-12)]_4 chrX:46572357-46572404 1.17e-34 5_[+5(3.63e-17)]_13 chr1:53940905-53940947 3.34e-22 15_[-2(1.56e-12)]_5 chr9:137057707-137057766 6.68e-19 17_[+5(1.78e-13)]_13 chr4:48494640-48494700 4.07e-36 12_[+3(4.81e-14)]_2_[+6(4.83e-14)]_\ 1 chr7:75796330-75796376 1.24e-10 [+3(3.21e-11)]_23 chr3:191682042-191682095 1.84e-26 17_[-4(9.37e-13)]_16 chrX:56368192-56368226 7.49e-11 1_[-6(1.16e-10)]_11 chr19:32573114-32573181 6.37e-28 6_[+9(1.31e-13)]_9_[+6(2.97e-08)]_8 chr19:47762547-47762631 1.90e-16 23_[-3(4.81e-14)]_38 chrX:53445665-53445715 2.80e-29 7_[+5(5.12e-16)]_14 chr5:157148775-157148831 7.67e-31 13_[+5(7.82e-16)]_14 chr6:155066174-155066226 1.58e-29 9_[+5(4.46e-16)]_14 chr10:12249399-12249431 2.79e-04 1_[-7(1.03e-10)]_11 chr7:6395767-6395798 9.47e-01 31 chr1:98555055-98555155 7.32e-06 67_[+4(4.63e-06)]_13 chr9:129974412-129974463 5.41e-27 8_[+5(3.06e-15)]_14 chr14:103694404-10369445 4.64e-02 23_[+3(9.83e-06)]_2 chr13:38293917-38293946 2.05e-05 1_[-4(5.59e-12)]_8 chr16:17002430-17002482 1.29e-24 5_[+3(1.64e-14)]_2_[+6(7.40e-13)] chr9:107429321-107429358 7.35e-10 5_[-10(2.72e-10)]_1 chr19_GL949748v2_alt:100 1.00e+00 19 chr11:73609012-73609041 9.92e-01 29 chr8:31023505-31023558 1.81e-26 2_[+3(1.77e-12)]_2_[+6(1.43e-10)]_4 chr17:2329010-2329044 4.44e-12 1_[+8(1.54e-11)]_12 chrX:133936256-133936296 1.16e-10 2_[+8(1.40e-11)]_17 chr11:122713711-12271376 4.20e-28 22_[+6(4.83e-14)]_7 chr13:49613871-49613924 7.46e-31 [+10(1.60e-15)]_22 chr5:60151246-60151308 6.48e-34 20_[+5(5.81e-17)]_13 chr4:171984870-171984957 3.69e-36 14_[-5(3.74e-18)]_44 chr2:110548325-110548362 6.30e-04 12_[+7(1.42e-10)]_5 chr14:20906052-20906097 1.02e-12 14_[+4(8.98e-11)]_11 chr1:143407483-143407563 6.37e-46 9_[+10(2.43e-15)]_2_[-3(6.34e-14)]_\ 15 chrX:152931138-152931174 1.61e-06 11_[+7(2.84e-12)]_5 chr10:69419137-69419169 2.66e-05 11_[+7(4.73e-11)]_1 chrX:41481018-41481083 9.34e-27 11_[+3(2.12e-11)]_2_[+6(1.10e-09)]_\ 7 chr17:52938124-52938188 2.40e-10 24_[+3(9.50e-11)]_17 chr10:96839422-96839465 6.54e-20 13_[-5(5.56e-13)]_1 chr2:221500001-221500056 6.15e-38 12_[+5(3.74e-18)]_14 chr19_GL949747v2_alt:403 2.15e-06 [-7(2.84e-12)]_12 chr2:35857080-35857124 1.33e-27 12_[+6(4.83e-14)]_10 chr1:33465-33509 8.80e-16 14_[-5(1.29e-11)]_1 chr3:120250083-120250116 2.37e-01 33 chr2:106419571-106419657 1.53e-35 13_[-5(7.37e-18)]_44 chr2:32388459-32388506 2.95e-28 4_[+5(2.97e-16)]_14 chr10:34538090-34538167 7.80e-41 10_[+9(6.65e-14)]_11_\ [-10(4.79e-13)]_3 chr19:41857036-41857074 1.02e-13 17_[-8(2.38e-13)] chr4:136323423-136323513 6.14e-21 46_[+3(3.22e-14)]_21 chr4:179918844-179918915 3.99e-49 14_[+3(3.22e-14)]_2_[-10(1.20e-14)]_\ 1 chr8:49676137-49676192 8.27e-28 23_[-10(6.25e-15)]_1 chr17:17955638-17955692 1.70e-21 1_[+10(9.88e-12)]_22 chr2:11171409-11171458 6.46e-08 18_[-10(1.91e-08)] chr8:114324537-114324602 1.11e-24 7_[-6(4.70e-09)]_10_[-9(6.24e-10)]_\ 4 chr3:11825878-11825920 2.29e-05 4_[-7(2.84e-12)]_18 chr2_KI270894v1_alt:9900 9.27e-27 [+3(5.78e-13)]_2_[+6(4.83e-14)]_2 chr5:75853576-75853627 2.17e-37 19_[-10(1.65e-19)]_1 chr22:29164830-29164874 4.02e-27 14_[-5(1.10e-17)]_1 chr12:104587858-10458789 5.08e-01 33 chr8:20318718-20318763 2.02e-28 2_[+5(6.28e-14)]_14 chr4:302777-302835 2.33e-37 11_[-5(3.74e-18)]_18 chr10:68420727-68420803 3.85e-33 7_[+9(1.31e-13)]_10_[-10(2.72e-10)]_\ 6 chr7_KI270804v1_alt:9734 5.83e-16 22_[-3(4.38e-11)]_27 chrX:120631889-120631975 3.49e-15 28_[+3(4.13e-06)]_2_[-10(1.61e-11)]_\ 2 chr1:34856930-34856966 1.49e-28 5_[-5(1.16e-14)]_2 chr10:128198806-12819884 9.36e-06 4_[-7(1.90e-12)]_12 chr20:33114815-33114883 7.75e-41 15_[+3(6.72e-13)]_2_[+6(4.83e-14)]_\ 6 chr13:105005211-10500528 1.24e-03 37_[+4(3.09e-05)]_12 chr3:134863380-134863441 1.19e-26 14_[-5(5.27e-14)]_18 chr1:240443441-240443487 9.78e-07 12_[+7(1.28e-06)]_14 chr20:1497545-1497583 8.09e-13 1_[+8(9.22e-13)]_16 chr17:67424052-67424105 4.37e-20 21_[-10(2.55e-14)]_1 chr12:104985834-10498588 3.89e-07 14_[-10(7.09e-07)]_5 chr4:41312602-41312668 1.93e-21 8_[+3(6.85e-10)]_8_[-1(9.87e-10)]_7 chr12:112217984-11221803 7.02e-14 1_[+10(1.46e-11)]_20 chr19:23406786-23406826 8.45e-16 14_[+6(6.64e-10)]_4 chr20:5737642-5737720 1.99e-34 17_[+9(3.76e-12)]_10_[+6(1.43e-10)]_\ 7 chr21:31608062-31608100 3.32e-09 6_[-7(3.34e-11)]_12 chr20:47173435-47173532 2.78e-32 33_[+9(2.83e-12)]_10_\ [-10(4.29e-13)]_1 chr7:56857007-56857047 1.40e-06 17_[-8(7.34e-09)]_2 chr12:122326349-12232639 1.10e-13 14_[-5(8.06e-10)]_4 chr6:138874751-138874804 7.31e-14 1_[+1(9.45e-09)]_8_[-3(6.05e-09)]_1 chr9:137265688-137265729 1.21e-01 4_[+8(1.57e-05)]_16 chr2:221666333-221666370 1.54e-30 1_[+10(1.65e-19)]_5 chr6:127631381-127631438 2.00e-37 4_[+3(4.81e-14)]_2_[+6(9.82e-14)]_6 chr17:65132964-65133030 3.45e-36 6_[+9(6.38e-13)]_10_[+6(3.71e-12)]_\ 6 chr16:89205755-89205798 2.18e-25 [+5(5.12e-16)]_14 chr12:7689051-7689104 8.82e-18 14_[-5(8.86e-13)]_10 chr11:31529057-31529130 2.70e-27 16_[+9(4.92e-10)]_8_[+6(2.91e-12)]_\ 5 chr8:139432147-139432237 6.45e-40 10_[+10(2.66e-12)]_2_[-3(1.64e-14)]_\ 24 chr7:64118358-64118401 7.37e-16 [+5(8.69e-12)]_14 chr18:42268527-42268581 4.00e-22 22_[-10(1.22e-13)]_1 chrX:133516505-133516542 4.20e-06 13_[-3(8.83e-12)]_1 chr19:5369014-5369051 8.75e-04 12_[+7(6.89e-10)]_5 chr1:215925945-215926032 4.87e-34 35_[+3(4.81e-14)]_2_[+6(1.97e-10)]_\ 5 chr17:4355292-4355326 8.45e-05 2_[-7(3.89e-11)]_12 chr17:5692492-5692552 1.33e-26 5_[-6(2.11e-10)]_2_[-3(4.77e-10)]_8 chr7:68799568-68799644 3.39e-42 16_[+3(1.64e-14)]_12_[-1(6.80e-13)]_\ 5 chr2_KI270894v1_alt:1018 1.84e-37 [+3(5.78e-13)]_2_[-10(8.10e-15)]_1 chr3:171721760-171721803 1.39e-29 11_[-10(9.21e-15)]_1 chr16:35600848-35600912 4.32e-47 [+3(4.81e-14)]_2_[-10(1.65e-19)]_8 chrY:18333030-18333070 1.28e-09 9_[-7(1.03e-10)]_11 chr16:8786240-8786301 2.43e-16 23_[-2(3.87e-09)]_16 chrY:12310354-12310407 1.32e-21 5_[+3(4.81e-14)]_2_[+6(3.39e-11)]_1 chr6:17594060-17594099 8.21e-18 12_[+6(4.83e-14)]_5 chr16:10858431-10858467 1.37e-04 4_[-7(2.51e-10)]_12 chr3:53052820-53052865 2.02e-38 1_[+10(1.65e-19)]_13 chrY:21630915-21630953 1.01e-05 11_[+2(1.14e-11)]_5 chr17:20034488-20034530 6.97e-11 4_[+8(4.33e-12)]_17 chr3:30636202-30636240 1.00e-12 6_[-7(9.67e-13)]_12 chr3:52699555-52699638 1.43e-25 40_[+5(7.56e-14)]_14 chr7:6415400-6415444 1.90e-19 1_[+5(2.78e-14)]_14 chr9:131113606-131113689 2.35e-23 9_[+9(7.83e-08)]_20_[-10(7.20e-11)]_\ 1 chr9:87985444-87985480 9.46e-05 4_[-7(1.90e-12)]_12 chr3:31458885-31458948 7.92e-24 5_[+9(7.22e-10)]_11_[+6(7.10e-12)]_\ 3 chr10:124876699-12487678 2.01e-48 21_[+3(3.22e-14)]_2_[+6(1.46e-13)]_\ 20 chr4:184838484-184838527 6.77e-19 1_[+5(1.13e-11)]_13 chr15:93114066-93114132 1.53e-42 [+9(1.22e-12)]_10_[-10(1.28e-16)]_3 chrX:41700878-41700955 3.66e-53 9_[+9(2.51e-12)]_10_[-10(1.65e-19)]_\ 5 chr1:155153300-155153346 1.27e-29 3_[+5(2.68e-15)]_14 chr2:61855354-61855393 1.10e-03 10_[+2(6.90e-07)]_7 chr10:45870228-45870284 9.92e-16 [+10(3.20e-07)]_2_[-3(5.78e-13)] chr6:103235374-103235447 1.32e-31 6_[+3(3.22e-14)]_2_[-10(2.74e-13)]_\ 11 chr16:83820513-83820558 2.92e-07 23_[+6(5.00e-09)] chr10:42402859-42402892 7.44e-06 12_[+7(1.90e-12)]_1 chr10:97343996-97344029 1.26e-05 12_[+7(9.67e-13)]_1 chr17:47647145-47647198 5.25e-22 3_[-6(2.14e-11)]_28 chr2:108724938-108724978 3.88e-15 8_[-10(1.56e-09)]_1 chr5:154607700-154607783 1.48e-45 1_[+10(2.55e-14)]_2_[-3(4.81e-14)]_\ 26 chr3:56556520-56556595 2.31e-35 8_[-6(9.82e-14)]_2_[-3(1.11e-06)]_\ 20 chr1:80798362-80798452 5.52e-45 7_[+10(2.97e-17)]_10_[-9(1.29e-12)]_\ 20 chr9:70371541-70371605 1.29e-44 1_[+9(1.22e-12)]_10_[-10(1.54e-13)] chr15:71555098-71555144 2.23e-19 14_[-5(1.51e-13)]_3 chr20:21376164-21376201 6.29e-04 12_[+7(9.88e-10)]_5 chr16:47273790-47273890 2.76e-39 14_[-6(4.39e-11)]_2_[-3(3.22e-14)]_\ 39 chr4_KI270789v1_alt:1767 1.69e-05 12_[+7(9.67e-13)]_2 chr5:139485233-139485320 3.67e-35 14_[-5(7.37e-18)]_44 chr19_GL949750v2_alt:101 1.00e+00 19 chr5:175936997-175937047 1.44e-36 8_[+5(7.37e-18)]_13 chr11:50258117-50258152 9.54e-06 11_[+7(1.21e-11)]_4 chr22:17499930-17500000 9.69e-34 13_[-5(1.12e-16)]_28 chr16:30681382-30681449 2.02e-16 19_[+4(1.38e-09)]_7_[-1(2.68e-05)]_\ 1 chr2:141149043-141149078 3.11e-03 6_[-9(3.92e-08)]_7 chrX:134448778-134448878 7.85e-14 7_[-2(5.67e-14)]_32_[+3(7.39e-05)]_\ 16 chr6_GL000255v2_alt:2052 3.31e-05 12_[+7(1.21e-11)]_1 chr6:162518970-162519008 6.01e-17 9_[-5(2.76e-11)] chr7:11232878-11232942 9.40e-26 [+3(4.08e-13)]_11_[-1(6.80e-13)]_10 chr1:26160449-26160498 2.14e-25 18_[-10(1.20e-14)] chr10:16914589-16914646 1.25e-26 14_[-5(1.28e-15)]_14 chr2:112950495-112950549 1.27e-29 22_[-10(9.06e-16)]_1 chr9:33999949-34000000 1.76e-23 15_[-4(2.81e-12)]_16 chr3:23814088-23814115 4.29e-01 27 chr11:38980219-38980291 1.98e-21 16_[+9(5.76e-13)]_10_[+6(1.26e-07)]_\ 2 chr8:140609858-140609895 8.28e-05 12_[+7(3.16e-11)]_5 chr7:1089368-1089429 1.54e-07 4_[-4(2.68e-06)]_4_[-9(5.86e-10)]_\ 11 chr1:11050472-11050514 4.21e-10 17_[-8(5.13e-11)]_4 chr4:138915237-138915279 5.39e-12 17_[-8(3.43e-12)]_4 chr8:144927988-144928028 3.46e-10 17_[-8(6.65e-11)]_2 chr3:50845742-50845776 1.09e-02 34 chr7:30254221-30254267 3.50e-21 3_[+5(1.62e-12)]_14 chr17:64446107-64446154 1.78e-26 4_[+5(3.45e-15)]_14 chr12:51882068-51882110 3.03e-09 12_[+7(2.96e-11)]_10 chr6:30745196-30745259 1.23e-37 20_[+5(3.74e-18)]_14 chr17:73193926-73193974 7.70e-29 5_[+5(9.14e-16)]_14 chr5:125641603-125641648 3.00e-37 13_[-10(3.60e-18)]_1 chr17:6083495-6083540 2.72e-29 6_[+5(1.58e-14)]_10 chr17:955571-955614 1.76e-21 13_[-5(3.06e-15)]_1 chr1:178267736-178267776 6.52e-01 40 chrY:3543628-3543669 3.52e-38 9_[-10(1.65e-19)]_1 chr19:11068434-11068496 2.39e-32 14_[-5(9.14e-16)]_19 chr9:21618114-21618189 5.51e-20 13_[-2(1.66e-13)]_40 chr19:12915165-12915211 1.52e-33 12_[-5(9.74e-17)]_5 chrX:21979901-21979946 8.67e-10 14_[-10(2.94e-09)] chr5:148123469-148123514 8.12e-10 19_[-9(5.86e-10)]_4 chr5:59771381-59771427 1.51e-22 7_[+4(9.37e-13)]_19 chr5:128405153-128405212 7.48e-25 2_[+3(3.74e-11)]_2_[-10(2.66e-12)]_\ 1 chr2:24446575-24446651 1.22e-24 27_[+3(1.64e-14)]_2_[+6(5.86e-10)]_\ 2 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (10) found. ******************************************************************************** CPU: wotan ********************************************************************************