Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3236)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 5160)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-184	-4.255e+02	0.0000	1377.0	42.55%	727.5	14.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-180	-4.151e+02	0.0000	1372.0	42.40%	736.4	14.27%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-170	-3.933e+02	0.0000	983.0	30.38%	369.5	7.16%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-165	-3.804e+02	0.0000	1240.0	38.32%	641.0	12.42%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-146	-3.377e+02	0.0000	1542.0	47.65%	1066.3	20.67%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-137	-3.168e+02	0.0000	1273.0	39.34%	774.2	15.00%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-136	-3.144e+02	0.0000	480.0	14.83%	64.6	1.25%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-131	-3.021e+02	0.0000	442.0	13.66%	51.6	1.00%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-124	-2.866e+02	0.0000	1482.0	45.80%	1086.2	21.05%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-108	-2.502e+02	0.0000	1185.0	36.62%	789.0	15.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-91	-2.117e+02	0.0000	747.0	23.08%	376.1	7.29%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-79	-1.841e+02	0.0000	947.0	29.26%	638.3	12.37%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-77	-1.775e+02	0.0000	1304.0	40.30%	1096.5	21.25%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-75	-1.745e+02	0.0000	495.0	15.30%	194.5	3.77%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-57	-1.328e+02	0.0000	324.0	10.01%	103.1	2.00%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-51	-1.195e+02	0.0000	1008.0	31.15%	865.2	16.77%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-40	-9.265e+01	0.0000	732.0	22.62%	595.5	11.54%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-35	-8.283e+01	0.0000	630.0	19.47%	499.4	9.68%
SeqBias: CG bias	SSSSSSSSSS	1e-27	-6.414e+01	0.0000	3211.0	99.23%	4914.7	95.25%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-24	-5.622e+01	0.0000	394.0	12.18%	295.1	5.72%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-23	-5.425e+01	0.0000	146.0	4.51%	52.7	1.02%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-23	-5.348e+01	0.0000	258.0	7.97%	155.5	3.01%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-23	-5.323e+01	0.0000	889.0	27.47%	935.6	18.13%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-18	-4.374e+01	0.0000	682.0	21.08%	696.5	13.50%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-16	-3.735e+01	0.0000	64.0	1.98%	11.6	0.22%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-14	-3.366e+01	0.0000	279.0	8.62%	225.6	4.37%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-14	-3.248e+01	0.0000	381.0	11.77%	352.9	6.84%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-13	-3.064e+01	0.0000	3107.0	96.01%	4748.8	92.03%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-13	-3.033e+01	0.0000	435.0	13.44%	429.6	8.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-12	-2.955e+01	0.0000	427.0	13.20%	422.2	8.18%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-10	-2.522e+01	0.0000	633.0	19.56%	721.4	13.98%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-10	-2.430e+01	0.0000	403.0	12.45%	414.5	8.03%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-10	-2.390e+01	0.0000	306.0	9.46%	291.9	5.66%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-9	-2.239e+01	0.0000	115.0	3.55%	73.2	1.42%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-9	-2.188e+01	0.0000	111.0	3.43%	70.4	1.36%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-9	-2.177e+01	0.0000	210.0	6.49%	181.5	3.52%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-9	-2.093e+01	0.0000	110.0	3.40%	71.6	1.39%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-8	-2.070e+01	0.0000	355.0	10.97%	368.1	7.13%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-8	-2.064e+01	0.0000	151.0	4.67%	116.5	2.26%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-7	-1.743e+01	0.0000	301.0	9.30%	313.7	6.08%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-6	-1.575e+01	0.0000	391.0	12.08%	443.6	8.60%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-6	-1.548e+01	0.0000	400.0	12.36%	457.7	8.87%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-6	-1.482e+01	0.0000	326.0	10.07%	360.6	6.99%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-6	-1.478e+01	0.0000	3024.0	93.45%	4664.3	90.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-6	-1.426e+01	0.0000	231.0	7.14%	237.7	4.61%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-6	-1.397e+01	0.0000	277.0	8.56%	299.0	5.79%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-5	-1.354e+01	0.0000	184.0	5.69%	180.3	3.49%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-5	-1.350e+01	0.0000	526.0	16.25%	648.9	12.58%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-5	-1.306e+01	0.0000	215.0	6.64%	222.5	4.31%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-5	-1.277e+01	0.0000	309.0	9.55%	349.9	6.78%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-5	-1.274e+01	0.0000	1372.0	42.40%	1930.5	37.41%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-5	-1.232e+01	0.0000	307.0	9.49%	349.6	6.77%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-5	-1.209e+01	0.0000	222.0	6.86%	237.0	4.59%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.204e+01	0.0000	185.0	5.72%	188.3	3.65%
SeqBias: CG-repeat	CGCGCGCGCG	1e-5	-1.193e+01	0.0000	2240.0	69.22%	3333.1	64.60%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-5	-1.182e+01	0.0001	396.0	12.24%	476.9	9.24%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-5	-1.172e+01	0.0001	87.0	2.69%	69.7	1.35%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-4	-1.108e+01	0.0001	752.0	23.24%	1001.7	19.41%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-4	-1.070e+01	0.0001	170.0	5.25%	175.9	3.41%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-4	-1.070e+01	0.0001	378.0	11.68%	459.0	8.90%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-4	-1.061e+01	0.0002	140.0	4.33%	137.1	2.66%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-4	-1.061e+01	0.0002	70.0	2.16%	53.3	1.03%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-4	-1.038e+01	0.0002	92.0	2.84%	79.8	1.55%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-4	-1.003e+01	0.0003	169.0	5.22%	177.9	3.45%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-4	-9.986e+00	0.0003	36.0	1.11%	19.1	0.37%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-4	-9.890e+00	0.0003	417.0	12.89%	521.2	10.10%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-9.729e+00	0.0003	80.0	2.47%	67.8	1.31%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-9.260e+00	0.0005	310.0	9.58%	374.6	7.26%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.455e+00	0.0012	123.0	3.80%	125.9	2.44%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.375e+00	0.0013	37.0	1.14%	23.2	0.45%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-3	-8.375e+00	0.0013	37.0	1.14%	23.2	0.45%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-3	-7.574e+00	0.0028	63.0	1.95%	54.7	1.06%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-3	-7.489e+00	0.0030	262.0	8.10%	321.0	6.22%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-3	-7.323e+00	0.0035	86.0	2.66%	83.4	1.62%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-3	-7.273e+00	0.0036	1761.0	54.42%	2623.0	50.83%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-7.238e+00	0.0037	558.0	17.24%	754.7	14.63%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-3	-7.163e+00	0.0039	289.0	8.93%	361.6	7.01%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-3	-7.038e+00	0.0044	420.0	12.98%	552.7	10.71%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.696e+00	0.0061	155.0	4.79%	177.1	3.43%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-2	-6.548e+00	0.0069	35.0	1.08%	25.2	0.49%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-2	-6.497e+00	0.0072	157.0	4.85%	181.8	3.52%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-6.264e+00	0.0090	113.0	3.49%	123.9	2.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-6.203e+00	0.0094	93.0	2.87%	97.5	1.89%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-5.978e+00	0.0117	161.0	4.98%	190.0	3.68%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-2	-5.957e+00	0.0118	558.0	17.24%	770.9	14.94%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.832e+00	0.0132	196.0	6.06%	240.2	4.65%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-5.762e+00	0.0140	72.0	2.22%	72.4	1.40%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-2	-5.674e+00	0.0151	344.0	10.63%	455.3	8.82%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-2	-5.646e+00	0.0154	767.0	23.70%	1092.9	21.18%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-2	-5.555e+00	0.0166	92.0	2.84%	99.1	1.92%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-5.485e+00	0.0176	60.0	1.85%	58.8	1.14%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-2	-5.468e+00	0.0178	208.0	6.43%	260.0	5.04%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-2	-5.394e+00	0.0189	3235.0	99.97%	5145.6	99.72%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.936e+00	0.0296	790.0	24.41%	1139.6	22.09%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-4.872e+00	0.0312	3236.0	100.00%	5150.6	99.82%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-2	-4.856e+00	0.0314	125.0	3.86%	148.8	2.88%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-2	-4.769e+00	0.0339	5.0	0.15%	0.5	0.01%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-4.753e+00	0.0341	394.0	12.18%	541.0	10.48%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-2	-4.656e+00	0.0371	1060.0	32.76%	1563.5	30.30%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-1	-4.510e+00	0.0426	510.0	15.76%	718.8	13.93%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-4.365e+00	0.0487	28.0	0.87%	23.3	0.45%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-4.268e+00	0.0531	11.0	0.34%	5.7	0.11%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-4.189e+00	0.0570	206.0	6.37%	269.4	5.22%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-4.158e+00	0.0582	653.0	20.18%	942.5	18.27%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-4.155e+00	0.0582	214.0	6.61%	281.8	5.46%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-4.041e+00	0.0642	28.0	0.87%	24.9	0.48%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-4.034e+00	0.0642	61.0	1.89%	67.0	1.30%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-4.011e+00	0.0649	112.0	3.46%	136.7	2.65%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-3.897e+00	0.0721	259.0	8.00%	350.3	6.79%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.855e+00	0.0745	114.0	3.52%	140.2	2.72%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.815e+00	0.0769	191.0	5.90%	251.2	4.87%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-3.813e+00	0.0769	48.0	1.48%	50.3	0.98%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-3.811e+00	0.0769	118.0	3.65%	146.7	2.84%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-1	-3.782e+00	0.0773	141.0	4.36%	179.9	3.49%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-3.751e+00	0.0791	124.0	3.83%	155.2	3.01%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.477e+00	0.1031	69.0	2.13%	80.4	1.56%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-3.424e+00	0.1077	622.0	19.22%	908.9	17.61%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-1	-3.420e+00	0.1077	23.0	0.71%	20.7	0.40%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e-1	-3.329e+00	0.1165	145.0	4.48%	189.4	3.67%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-3.319e+00	0.1168	120.0	3.71%	153.3	2.97%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.297e+00	0.1183	15.0	0.46%	11.6	0.22%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.274e+00	0.1200	1308.0	40.42%	1984.7	38.46%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-3.259e+00	0.1209	176.0	5.44%	235.7	4.57%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-1	-3.165e+00	0.1317	1081.0	33.41%	1629.6	31.58%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.149e+00	0.1328	329.0	10.17%	465.4	9.02%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-3.082e+00	0.1409	8.0	0.25%	4.1	0.08%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-3.081e+00	0.1409	92.0	2.84%	115.3	2.23%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e-1	-3.069e+00	0.1409	309.0	9.55%	436.7	8.46%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-1	-3.037e+00	0.1440	177.0	5.47%	239.6	4.64%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-2.999e+00	0.1484	3234.0	99.94%	5148.5	99.78%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-2.866e+00	0.1682	76.0	2.35%	94.6	1.83%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.863e+00	0.1682	481.0	14.86%	703.0	13.62%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.850e+00	0.1684	193.0	5.96%	265.2	5.14%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-2.794e+00	0.1767	171.0	5.28%	233.4	4.52%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-2.771e+00	0.1795	57.0	1.76%	69.0	1.34%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-1	-2.698e+00	0.1917	389.0	12.02%	564.2	10.93%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.678e+00	0.1940	11.0	0.34%	8.2	0.16%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.640e+00	0.2002	121.0	3.74%	161.0	3.12%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.637e+00	0.2002	67.0	2.07%	83.2	1.61%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-2.636e+00	0.2002	47.0	1.45%	55.6	1.08%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-2.615e+00	0.2009	44.0	1.36%	51.6	1.00%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.573e+00	0.2080	100.0	3.09%	131.8	2.55%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-2.545e+00	0.2123	77.0	2.38%	98.1	1.90%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.528e+00	0.2145	558.0	17.24%	828.3	16.05%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.503e+00	0.2184	397.0	12.27%	580.3	11.25%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.450e+00	0.2286	600.0	18.54%	895.4	17.35%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-2.335e+00	0.2549	145.0	4.48%	200.2	3.88%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.302e+00	0.2617	39.0	1.21%	46.3	0.90%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.276e+00	0.2667	36.0	1.11%	42.0	0.81%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.252e+00	0.2696	110.0	3.40%	149.7	2.90%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.252e+00	0.2696	110.0	3.40%	149.7	2.90%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.238e+00	0.2715	71.0	2.19%	92.5	1.79%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-2.220e+00	0.2748	543.0	16.78%	812.4	15.74%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.211e+00	0.2753	723.0	22.34%	1093.7	21.19%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.178e+00	0.2828	1529.0	47.25%	2367.6	45.88%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.155e+00	0.2876	369.0	11.40%	544.3	10.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.147e+00	0.2881	615.0	19.00%	926.9	17.96%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-2.138e+00	0.2887	20.0	0.62%	21.2	0.41%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.090e+00	0.3011	383.0	11.84%	567.4	11.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.067e+00	0.3061	22.0	0.68%	24.9	0.48%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.026e+00	0.3170	455.0	14.06%	680.3	13.18%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.007e+00	0.3211	75.0	2.32%	100.1	1.94%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.004e+00	0.3211	158.0	4.88%	224.9	4.36%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.993e+00	0.3215	1064.0	32.88%	1636.9	31.72%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.992e+00	0.3215	1668.0	51.55%	2595.9	50.31%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.991e+00	0.3215	439.0	13.57%	656.9	12.73%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.991e+00	0.3215	132.0	4.08%	185.9	3.60%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.953e+00	0.3268	111.0	3.43%	154.7	3.00%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.892e+00	0.3453	422.0	13.04%	632.0	12.25%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.885e+00	0.3455	752.0	23.24%	1148.8	22.26%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.867e+00	0.3497	22.0	0.68%	25.3	0.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.856e+00	0.3516	267.0	8.25%	393.7	7.63%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.833e+00	0.3577	268.0	8.28%	395.6	7.67%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.824e+00	0.3591	29.0	0.90%	35.4	0.69%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.802e+00	0.3649	575.0	17.77%	873.8	16.93%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.773e+00	0.3733	157.0	4.85%	226.9	4.40%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.732e+00	0.3869	691.0	21.35%	1057.5	20.49%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.732e+00	0.3869	150.0	4.64%	216.1	4.19%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.724e+00	0.3869	50.0	1.55%	67.0	1.30%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.713e+00	0.3876	89.0	2.75%	124.7	2.42%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.709e+00	0.3876	41.0	1.27%	53.2	1.03%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.678e+00	0.3969	674.0	20.83%	1032.8	20.02%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.665e+00	0.4001	234.0	7.23%	346.6	6.72%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.638e+00	0.4088	577.0	17.83%	881.5	17.08%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.595e+00	0.4247	1137.0	35.14%	1766.2	34.23%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.588e+00	0.4253	41.0	1.27%	54.7	1.06%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.563e+00	0.4313	49.0	1.51%	66.8	1.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.563e+00	0.4313	49.0	1.51%	66.2	1.28%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.553e+00	0.4335	55.0	1.70%	75.6	1.46%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.468e+00	0.4691	522.0	16.13%	800.2	15.51%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.420e+00	0.4896	179.0	5.53%	266.6	5.17%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.417e+00	0.4896	1327.0	41.01%	2075.6	40.22%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.386e+00	0.5014	719.0	22.22%	1113.7	21.58%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.356e+00	0.5141	1057.0	32.66%	1649.2	31.96%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.342e+00	0.5187	268.0	8.28%	406.5	7.88%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.301e+00	0.5378	12.0	0.37%	14.0	0.27%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.264e+00	0.5548	416.0	12.86%	640.5	12.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.231e+00	0.5706	143.0	4.42%	214.4	4.16%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.159e+00	0.6104	35.0	1.08%	49.9	0.97%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.157e+00	0.6104	71.0	2.19%	104.5	2.03%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.117e+00	0.6303	217.0	6.71%	333.0	6.45%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.106e+00	0.6305	5.0	0.15%	5.7	0.11%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.106e+00	0.6305	5.0	0.15%	5.1	0.10%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.105e+00	0.6305	2.0	0.06%	1.8	0.04%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.095e+00	0.6317	186.0	5.75%	284.8	5.52%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.087e+00	0.6337	277.0	8.56%	427.9	8.29%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.085e+00	0.6337	109.0	3.37%	164.3	3.18%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.015e+00	0.6741	172.0	5.32%	264.2	5.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.012e+00	0.6741	590.0	18.23%	924.6	17.92%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-9.882e-01	0.6860	4.0	0.12%	4.4	0.09%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-9.723e-01	0.6937	121.0	3.74%	185.7	3.60%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-9.560e-01	0.7017	31.0	0.96%	45.3	0.88%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-9.534e-01	0.7017	1.0	0.03%	0.0	0.00%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.446e-01	0.7032	90.0	2.78%	137.5	2.67%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-8.848e-01	0.7430	135.0	4.17%	209.6	4.06%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-8.301e-01	0.7812	93.0	2.87%	144.7	2.80%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.088e-01	0.7943	28.0	0.87%	42.8	0.83%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.610e-01	0.8294	116.0	3.58%	182.9	3.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-7.576e-01	0.8294	6.0	0.19%	9.0	0.17%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-7.543e-01	0.8294	13.0	0.40%	19.5	0.38%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-7.406e-01	0.8350	188.0	5.81%	297.4	5.76%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.251e-01	0.8442	16.0	0.49%	24.8	0.48%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-7.151e-01	0.8489	581.0	17.95%	924.5	17.92%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.992e-01	0.8587	699.0	21.60%	1113.4	21.58%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.881e-01	0.8644	7.0	0.22%	10.3	0.20%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.828e-01	0.8651	126.0	3.89%	200.6	3.89%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.735e-01	0.8694	389.0	12.02%	620.4	12.02%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.509e-01	0.8853	1588.0	49.07%	2534.5	49.12%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.430e-01	0.8885	13.0	0.40%	20.2	0.39%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.359e-01	0.8909	54.0	1.67%	86.2	1.67%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.178e-01	0.9033	11.0	0.34%	17.4	0.34%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.979e-01	0.9174	198.0	6.12%	318.5	6.17%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.879e-01	0.9227	9.0	0.28%	14.8	0.29%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.679e-01	0.9373	117.0	3.62%	189.6	3.67%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.677e-01	0.9373	385.0	11.90%	619.4	12.00%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.605e-01	0.9373	29.0	0.90%	47.0	0.91%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.505e-01	0.9416	24.0	0.74%	39.7	0.77%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.497e-01	0.9416	10.0	0.31%	16.3	0.32%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-5.475e-01	0.9416	43.0	1.33%	70.6	1.37%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.442e-01	0.9416	27.0	0.83%	44.1	0.86%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.066e-01	0.9676	169.0	5.22%	275.8	5.35%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.897e-01	0.9800	18.0	0.56%	30.0	0.58%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-4.862e-01	0.9800	41.0	1.27%	68.9	1.33%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.743e-01	0.9870	1.0	0.03%	1.7	0.03%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.630e-01	0.9942	137.0	4.23%	225.6	4.37%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.483e-01	1.0000	220.0	6.80%	360.5	6.99%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.476e-01	1.0000	120.0	3.71%	198.2	3.84%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-4.458e-01	1.0000	429.0	13.26%	697.3	13.51%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.370e-01	1.0000	47.0	1.45%	79.7	1.55%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.340e-01	1.0000	274.0	8.47%	448.2	8.69%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.252e-01	1.0000	181.0	5.59%	298.3	5.78%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-4.210e-01	1.0000	68.0	2.10%	114.9	2.23%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-4.132e-01	1.0000	40.0	1.24%	68.8	1.33%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.047e-01	1.0000	173.0	5.35%	286.6	5.55%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.022e-01	1.0000	406.0	12.55%	663.2	12.85%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-3.951e-01	1.0000	142.0	4.39%	236.2	4.58%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.828e-01	1.0000	5.0	0.15%	9.3	0.18%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.828e-01	1.0000	5.0	0.15%	9.4	0.18%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.647e-01	1.0000	6.0	0.19%	11.6	0.23%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.622e-01	1.0000	47.0	1.45%	81.4	1.58%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-3.451e-01	1.0000	278.0	8.59%	460.6	8.93%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.354e-01	1.0000	161.0	4.98%	270.4	5.24%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.332e-01	1.0000	8.0	0.25%	15.8	0.31%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.239e-01	1.0000	182.0	5.62%	305.1	5.91%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.194e-01	1.0000	9.0	0.28%	17.6	0.34%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-3.123e-01	1.0000	85.0	2.63%	146.4	2.84%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-3.073e-01	1.0000	46.0	1.42%	81.9	1.59%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-3.065e-01	1.0000	10.0	0.31%	19.6	0.38%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-2.977e-01	1.0000	4.0	0.12%	9.0	0.17%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.915e-01	1.0000	182.0	5.62%	307.8	5.96%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.806e-01	1.0000	39.0	1.21%	70.8	1.37%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.712e-01	1.0000	126.0	3.89%	216.6	4.20%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.471e-01	1.0000	586.0	18.11%	968.7	18.77%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.462e-01	1.0000	814.0	25.15%	1336.9	25.91%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.415e-01	1.0000	21.0	0.65%	40.9	0.79%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.341e-01	1.0000	280.0	8.65%	472.4	9.16%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.330e-01	1.0000	124.0	3.83%	215.4	4.17%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.255e-01	1.0000	906.0	28.00%	1487.6	28.83%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.243e-01	1.0000	39.0	1.21%	72.4	1.40%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.201e-01	1.0000	162.0	5.01%	279.6	5.42%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.103e-01	1.0000	325.0	10.04%	548.7	10.63%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.096e-01	1.0000	737.0	22.78%	1217.1	23.59%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.075e-01	1.0000	9.0	0.28%	19.3	0.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.058e-01	1.0000	381.0	11.77%	640.2	12.41%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.038e-01	1.0000	148.0	4.57%	257.0	4.98%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.965e-01	1.0000	2.0	0.06%	5.9	0.11%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.886e-01	1.0000	37.0	1.14%	70.5	1.37%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.789e-01	1.0000	142.0	4.39%	249.2	4.83%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.747e-01	1.0000	76.0	2.35%	138.0	2.67%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.691e-01	1.0000	17.0	0.53%	35.1	0.68%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.678e-01	1.0000	23.0	0.71%	46.7	0.90%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.670e-01	1.0000	49.0	1.51%	92.7	1.80%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.658e-01	1.0000	5.0	0.15%	12.9	0.25%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.614e-01	1.0000	198.0	6.12%	344.0	6.67%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.585e-01	1.0000	523.0	16.16%	878.1	17.02%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.538e-01	1.0000	1.0	0.03%	3.8	0.07%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.471e-01	1.0000	614.0	18.97%	1028.1	19.92%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.449e-01	1.0000	291.0	8.99%	500.1	9.69%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.448e-01	1.0000	158.0	4.88%	279.4	5.41%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.413e-01	1.0000	134.0	4.14%	239.8	4.65%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.412e-01	1.0000	34.0	1.05%	67.5	1.31%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.348e-01	1.0000	100.0	3.09%	182.9	3.54%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.305e-01	1.0000	58.0	1.79%	110.5	2.14%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.296e-01	1.0000	105.0	3.24%	191.1	3.70%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.292e-01	1.0000	363.0	11.22%	621.3	12.04%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.283e-01	1.0000	6.0	0.19%	15.6	0.30%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.268e-01	1.0000	116.0	3.58%	210.7	4.08%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.213e-01	1.0000	94.0	2.90%	173.4	3.36%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.198e-01	1.0000	30.0	0.93%	61.6	1.19%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.184e-01	1.0000	597.0	18.45%	1006.6	19.51%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.031e-01	1.0000	8.0	0.25%	20.5	0.40%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.009e-01	1.0000	978.0	30.22%	1628.4	31.56%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.531e-02	1.0000	288.0	8.90%	504.0	9.77%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.301e-02	1.0000	166.0	5.13%	299.9	5.81%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.079e-02	1.0000	530.0	16.38%	903.6	17.51%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-8.952e-02	1.0000	1334.0	41.22%	2204.7	42.73%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-8.470e-02	1.0000	137.0	4.23%	251.8	4.88%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.290e-02	1.0000	16.0	0.49%	37.4	0.72%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.243e-02	1.0000	561.0	17.34%	956.7	18.54%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.839e-02	1.0000	123.0	3.80%	228.5	4.43%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-7.464e-02	1.0000	478.0	14.77%	823.0	15.95%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.356e-02	1.0000	3.0	0.09%	10.5	0.20%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-7.008e-02	1.0000	61.0	1.89%	121.3	2.35%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.605e-02	1.0000	522.0	16.13%	897.4	17.39%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.400e-02	1.0000	146.0	4.51%	270.1	5.23%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.168e-02	1.0000	371.0	11.46%	649.5	12.59%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-5.953e-02	1.0000	3218.0	99.44%	5142.6	99.66%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.792e-02	1.0000	1080.0	33.37%	1808.6	35.05%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-5.503e-02	1.0000	2444.0	75.53%	3975.4	77.04%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.659e-02	1.0000	47.0	1.45%	99.9	1.94%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-4.303e-02	1.0000	72.0	2.22%	145.8	2.83%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-4.265e-02	1.0000	707.0	21.85%	1210.9	23.47%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-3.785e-02	1.0000	684.0	21.14%	1175.7	22.78%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-3.450e-02	1.0000	41.0	1.27%	90.2	1.75%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-3.443e-02	1.0000	226.0	6.98%	415.6	8.05%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.353e-02	1.0000	101.0	3.12%	199.6	3.87%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.110e-02	1.0000	781.0	24.13%	1338.7	25.94%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.986e-02	1.0000	135.0	4.17%	260.1	5.04%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.872e-02	1.0000	351.0	10.85%	629.2	12.19%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-2.734e-02	1.0000	101.0	3.12%	201.9	3.91%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.638e-02	1.0000	120.0	3.71%	235.1	4.56%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.566e-02	1.0000	23.0	0.71%	57.2	1.11%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.449e-02	1.0000	119.0	3.68%	234.2	4.54%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.195e-02	1.0000	4.0	0.12%	16.4	0.32%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-2.136e-02	1.0000	125.0	3.86%	246.1	4.77%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.962e-02	1.0000	133.0	4.11%	261.1	5.06%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.682e-02	1.0000	403.0	12.45%	725.7	14.06%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.620e-02	1.0000	208.0	6.43%	394.1	7.64%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-1.548e-02	1.0000	62.0	1.92%	135.7	2.63%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.524e-02	1.0000	442.0	13.66%	792.8	15.36%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.454e-02	1.0000	677.0	20.92%	1183.1	22.93%
SeqBias: CA-repeat	CACACACACA	1e0	-1.153e-02	1.0000	1495.0	46.20%	2514.6	48.73%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.021e-02	1.0000	32.0	0.99%	80.8	1.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-9.416e-03	1.0000	283.0	8.75%	530.3	10.28%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-7.859e-03	1.0000	24.0	0.74%	65.2	1.26%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.442e-03	1.0000	9.0	0.28%	32.4	0.63%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-6.600e-03	1.0000	18.0	0.56%	53.0	1.03%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.385e-03	1.0000	211.0	6.52%	412.2	7.99%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.040e-03	1.0000	94.0	2.90%	203.6	3.94%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.892e-03	1.0000	51.0	1.58%	125.7	2.44%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.796e-03	1.0000	151.0	4.67%	312.9	6.06%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.168e-03	1.0000	13.0	0.40%	46.5	0.90%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.700e-03	1.0000	5.0	0.15%	26.2	0.51%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.075e-03	1.0000	24.0	0.74%	74.1	1.44%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.013e-03	1.0000	61.0	1.89%	151.5	2.94%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-7.390e-04	1.0000	171.0	5.28%	360.9	6.99%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.390e-04	1.0000	42.0	1.30%	115.6	2.24%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.180e-04	1.0000	87.0	2.69%	206.9	4.01%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.090e-04	1.0000	11.0	0.34%	46.3	0.90%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.610e-04	1.0000	972.0	30.04%	1731.5	33.56%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.430e-04	1.0000	29.0	0.90%	90.2	1.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.320e-04	1.0000	40.0	1.24%	114.8	2.23%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.800e-05	1.0000	490.0	15.14%	947.4	18.36%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.600e-05	1.0000	633.0	19.56%	1206.8	23.39%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-4.000e-06	1.0000	157.0	4.85%	372.6	7.22%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.000e-06	1.0000	82.0	2.53%	231.2	4.48%
Tal1	CATCTG	1e0	-1.000e-06	1.0000	297.0	9.18%	646.0	12.52%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-0.000e+00	1.0000	1160.0	35.85%	2127.6	41.23%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-0.000e+00	1.0000	71.0	2.19%	213.0	4.13%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	52.0	1.61%	174.0	3.37%
SeqBias: TA-repeat	TATATATATA	1e0	-0.000e+00	1.0000	230.0	7.11%	596.1	11.55%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-0.000e+00	1.0000	104.0	3.21%	775.3	15.02%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-0.000e+00	1.0000	37.0	1.14%	179.4	3.48%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.4	0.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.5	0.01%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	3236.0	100.00%	5160.0	100.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.2	0.06%