Information for 3-CTAGAGCGSC (Motif 5)


Reverse Opposite:

p-value:1e-56
log p-value:-1.308e+02
Information Content per bp:1.781
Number of Target Sequences with motif352.0
Percentage of Target Sequences with motif10.88%
Number of Background Sequences with motif127.8
Percentage of Background Sequences with motif2.48%
Average Position of motif in Targets136.0 +/- 77.8bp
Average Position of motif in Background150.2 +/- 108.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ABF2/MA0266.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--CTAGAGCGSC
CTCTAGA-----

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTAGAGCGSC-
CTTGAGTGGCT

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAGAGCGSC
BTBRAGTGSN

z/dmmpmm(Down)/fly

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTAGAGCGSC
--TGAGTG--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAGAGCGSC
CTYRAGTGSY

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTAGAGCGSC
RGAGAGAG--

z/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTAGAGCGSC
-TTGAGTG--

Trl/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTAGAGCGSC-
-GAGAGAGCAA

Trl/MA0205.1/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTAGAGCGSC-
-GAGAGAGCAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTAGAGCGSC-
-TTGAGTGSTT