Information for 4-CAAVATGGCGGC (Motif 4)


Reverse Opposite:

p-value:1e-56
log p-value:-1.311e+02
Information Content per bp:1.757
Number of Target Sequences with motif296.0
Percentage of Target Sequences with motif9.15%
Number of Background Sequences with motif84.9
Percentage of Background Sequences with motif1.65%
Average Position of motif in Targets138.1 +/- 86.6bp
Average Position of motif in Background124.6 +/- 105.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.98
Offset:0
Orientation:forward strand
Alignment:CAAVATGGCGGC
CAAGATGGCGGC

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:CAAVATGGCGGC
CAAGATGGCGGC

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:CAAVATGGCGGC-
--TAATGGCGGNC

pho/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CAAVATGGCGGC
---AATGGC---

CTCF/MA0531.1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAAVATGGCGGC
CCGCTAGATGGCGCC

E2F2/MA0864.1/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CAAVATGGCGGC-----
-AAAATGGCGCCATTTT

ERF1B/MA0567.1/Jaspar

Match Rank:7
Score:0.66
Offset:5
Orientation:reverse strand
Alignment:CAAVATGGCGGC-
-----TGGCGGCG

E2F3/MA0469.2/Jaspar

Match Rank:8
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAAVATGGCGGC------
AAAAATGGCGCCATTTTT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CAAVATGGCGGC
AACAGATGGC---

PB0164.1_Smad3_2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CAAVATGGCGGC-----
NAGANTGGCGGGGNGNA