Information for 19-GCCCGGAGCAGT (Motif 28)


Reverse Opposite:

p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.530
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets148.2 +/- 99.2bp
Average Position of motif in Background176.5 +/- 76.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCCCGGAGCAGT
---CGGAGC---

SKN7(MacIsaac)/Yeast

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGAGCAGT
GGCCCGGA-----

RGT1/Literature(Harbison)/Yeast

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:GCCCGGAGCAGT
---CGGANNA--

CAT8/MA0280.1/Jaspar

Match Rank:4
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GCCCGGAGCAGT
--CCGGAA----

SIP4/MA0380.1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GCCCGGAGCAGT
-TCCGGAG----

Deaf1/dmmpmm(Down)/fly

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCCGGAGCAGT
GCCCGAAGCGCT

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCCCGGAGCAGT-
---GGGAGGACNG

YLR278C/MA0430.1/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GCCCGGAGCAGT
--CCGGAGTT--

THAP1/MA0597.1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCGGAGCAGT
CTGCCCGCA-----

HAL9/MA0311.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GCCCGGAGCAGT
---CGGAA----