Information for 22-AGTTGTTCTC (Motif 25)


Reverse Opposite:

p-value:1e-8
log p-value:-2.038e+01
Information Content per bp:1.662
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif36.1
Percentage of Background Sequences with motif0.70%
Average Position of motif in Targets132.2 +/- 95.1bp
Average Position of motif in Background128.0 +/- 82.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HMG-1/MA0044.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:AGTTGTTCTC
-GTTGTACTC

ROX1/MA0371.1/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AGTTGTTCTC
CCCATTGTTCTC

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGTTGTTCTC---
TAATTGTTCTAAAC

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----AGTTGTTCTC--
NNTTTATTGTTCTNNN

Aef1/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGTTGTTCTC
TGTTGTTG--

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----AGTTGTTCTC--
AANTTATTGTTCTNNA

PB0120.1_Foxj1_2/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGTTGTTCTC----
GTNTTGTTGTGANNT

PB0065.1_Sox15_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----AGTTGTTCTC--
ANNTCTATTGTTCNNNA

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTTGTTCTC
CCATTGTTNY-

PB0067.1_Sox18_1/Jaspar

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTTGTTCTC---
TTCAATTGTTCTAAAA