Information for 20-ACTGCGTGCG (Motif 21)


Reverse Opposite:

p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.830
Number of Target Sequences with motif50.0
Percentage of Target Sequences with motif1.55%
Number of Background Sequences with motif10.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets153.7 +/- 79.2bp
Average Position of motif in Background162.8 +/- 110.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:ACTGCGTGCG-
-TTGCGTGCVA

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ACTGCGTGCG
--TGCGTG--

Med/dmmpmm(SeSiMCMC)/fly

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ACTGCGTGCG
ACTGCGCCTG

FUS3/MA0565.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:ACTGCGTGCG
-GCGCATGCG

ABI3/MA0564.1/Jaspar

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ACTGCGTGCG
-CTGCATGCA

SOK2(MacIsaac)/Yeast

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:ACTGCGTGCG
-TTGCCTGC-

NAC058/MA0938.1/Jaspar

Match Rank:7
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:ACTGCGTGCG
-TTGCGTGN-

EGR4/MA0733.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACTGCGTGCG-----
AANTGCGTGGGCGTNN

EGR2/MA0472.2/Jaspar

Match Rank:9
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACTGCGTGCG---
--TGCGTGGGCGT

EGR3/MA0732.1/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:ACTGCGTGCG-----
ANTGCGTGGGCGTNN