Information for 19-GCGTTTGAGC (Motif 20)


Reverse Opposite:

p-value:1e-12
log p-value:-2.788e+01
Information Content per bp:1.657
Number of Target Sequences with motif128.0
Percentage of Target Sequences with motif3.96%
Number of Background Sequences with motif75.9
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets128.4 +/- 80.5bp
Average Position of motif in Background153.0 +/- 102.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

vnd/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GCGTTTGAGC
GCACTTGAGC

NRF1/MA0506.1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCGTTTGAGC-
GCGCCTGCGCA

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCGTTTGAGC----
NNGCGTGTGTGCNGCN

pan/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GCGTTTGAGC
---TTTGATN

NRF(NRF)/Promoter/Homer

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCGTTTGAGC
GTGCGCATGCGC

z/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCGTTTGAGC-
----TTGAGTG

pan/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCGTTTGAGC--
-CCTTTGATCTT

pan/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCGTTTGAGC
--CTTTGATC

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GCGTTTGAGC-
GRTGMTRGAGCC

tin/dmmpmm(Down)/fly

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GCGTTTGAGC
CCACTTGAGA