Information for 1-GGGARWTGTAGT (Motif 2)


Reverse Opposite:

p-value:1e-144
log p-value:-3.330e+02
Information Content per bp:1.770
Number of Target Sequences with motif432.0
Percentage of Target Sequences with motif13.35%
Number of Background Sequences with motif32.0
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets139.1 +/- 79.6bp
Average Position of motif in Background104.3 +/- 100.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GFY(?)/Promoter/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:GGGARWTGTAGT
GGGAATTGTAGT

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:2
Score:0.83
Offset:-7
Orientation:reverse strand
Alignment:-------GGGARWTGTAGT-
GCATTCTGGGAATTGTAGTT

Unknown1/Arabidopsis-Promoters/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGGARWTGTAGT--
RGGGTAWWWTHGTAA

MZF1/MA0056.1/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGGARWTGTAGT
TGGGGA--------

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGGARWTGTAGT---
---NNHTGTGGTTWN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGGARWTGTAGT------
-NNNANTGCAGTGCNNTT

ANT(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----GGGARWTGTAGT
ACCTNGGGAACTGTGC-

Aef1/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.54
Offset:6
Orientation:reverse strand
Alignment:GGGARWTGTAGT--
------TGTTGTTG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GGGARWTGTAGT---
-----CTGTGGTTTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGGARWTGTAGT--
----GCTGTGGTTT