Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3236)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 3236)	% of Background Sequences with Motif
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-6.735e-01	1.0000	1588.0	49.07%	1588.0	49.07%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-6.735e-01	1.0000	1668.0	51.55%	1668.0	51.55%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-6.735e-01	1.0000	1542.0	47.65%	1542.0	47.65%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-6.735e-01	1.0000	1529.0	47.25%	1529.0	47.25%
SeqBias: CA-repeat	CACACACACA	1e0	-6.735e-01	1.0000	1495.0	46.20%	1495.0	46.20%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-6.734e-01	1.0000	1482.0	45.80%	1482.0	45.80%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-6.734e-01	1.0000	1761.0	54.42%	1761.0	54.42%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-6.733e-01	1.0000	1377.0	42.55%	1377.0	42.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-6.733e-01	1.0000	1372.0	42.40%	1372.0	42.40%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-6.733e-01	1.0000	1372.0	42.40%	1372.0	42.40%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.732e-01	1.0000	1334.0	41.22%	1334.0	41.22%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.732e-01	1.0000	1327.0	41.01%	1327.0	41.01%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.731e-01	1.0000	1308.0	40.42%	1308.0	40.42%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-6.731e-01	1.0000	1304.0	40.30%	1304.0	40.30%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-6.731e-01	1.0000	1273.0	39.34%	1273.0	39.34%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.730e-01	1.0000	1240.0	38.32%	1240.0	38.32%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-6.728e-01	1.0000	1185.0	36.62%	1185.0	36.62%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.727e-01	1.0000	1160.0	35.85%	1160.0	35.85%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-6.726e-01	1.0000	1137.0	35.14%	1137.0	35.14%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-6.723e-01	1.0000	1081.0	33.41%	1081.0	33.41%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-6.723e-01	1.0000	1080.0	33.37%	1080.0	33.37%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.723e-01	1.0000	1064.0	32.88%	1064.0	32.88%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-6.722e-01	1.0000	1060.0	32.76%	1060.0	32.76%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-6.722e-01	1.0000	1057.0	32.66%	1057.0	32.66%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-6.720e-01	1.0000	1008.0	31.15%	1008.0	31.15%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-6.719e-01	1.0000	2240.0	69.22%	2240.0	69.22%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-6.718e-01	1.0000	983.0	30.38%	983.0	30.38%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.718e-01	1.0000	978.0	30.22%	978.0	30.22%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-6.717e-01	1.0000	972.0	30.04%	972.0	30.04%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-6.716e-01	1.0000	947.0	29.26%	947.0	29.26%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.713e-01	1.0000	906.0	28.00%	906.0	28.00%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.712e-01	1.0000	889.0	27.47%	889.0	27.47%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-6.706e-01	1.0000	814.0	25.15%	814.0	25.15%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-6.703e-01	1.0000	2444.0	75.53%	2444.0	75.53%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-6.703e-01	1.0000	790.0	24.41%	790.0	24.41%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.702e-01	1.0000	781.0	24.13%	781.0	24.13%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-6.701e-01	1.0000	767.0	23.70%	767.0	23.70%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-6.699e-01	1.0000	752.0	23.24%	752.0	23.24%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-6.699e-01	1.0000	752.0	23.24%	752.0	23.24%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.699e-01	1.0000	747.0	23.08%	747.0	23.08%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.698e-01	1.0000	737.0	22.78%	737.0	22.78%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-6.697e-01	1.0000	732.0	22.62%	732.0	22.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-6.696e-01	1.0000	723.0	22.34%	723.0	22.34%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-6.696e-01	1.0000	719.0	22.22%	719.0	22.22%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-6.694e-01	1.0000	707.0	21.85%	707.0	21.85%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.693e-01	1.0000	699.0	21.60%	699.0	21.60%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-6.692e-01	1.0000	691.0	21.35%	691.0	21.35%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.692e-01	1.0000	684.0	21.14%	684.0	21.14%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.691e-01	1.0000	682.0	21.08%	682.0	21.08%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.691e-01	1.0000	677.0	20.92%	677.0	20.92%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.690e-01	1.0000	674.0	20.83%	674.0	20.83%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-6.687e-01	1.0000	653.0	20.18%	653.0	20.18%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-6.685e-01	1.0000	633.0	19.56%	633.0	19.56%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.685e-01	1.0000	633.0	19.56%	633.0	19.56%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.684e-01	1.0000	630.0	19.47%	630.0	19.47%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-6.683e-01	1.0000	622.0	19.22%	622.0	19.22%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.682e-01	1.0000	615.0	19.00%	615.0	19.00%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.682e-01	1.0000	614.0	18.97%	614.0	18.97%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.680e-01	1.0000	600.0	18.54%	600.0	18.54%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.679e-01	1.0000	597.0	18.45%	597.0	18.45%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.678e-01	1.0000	590.0	18.23%	590.0	18.23%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.677e-01	1.0000	586.0	18.11%	586.0	18.11%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.676e-01	1.0000	581.0	17.95%	581.0	17.95%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.676e-01	1.0000	577.0	17.83%	577.0	17.83%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.675e-01	1.0000	575.0	17.77%	575.0	17.77%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-6.673e-01	1.0000	561.0	17.34%	561.0	17.34%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.672e-01	1.0000	558.0	17.24%	558.0	17.24%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-6.672e-01	1.0000	558.0	17.24%	558.0	17.24%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-6.672e-01	1.0000	558.0	17.24%	558.0	17.24%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-6.670e-01	1.0000	543.0	16.78%	543.0	16.78%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.667e-01	1.0000	530.0	16.38%	530.0	16.38%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.666e-01	1.0000	526.0	16.25%	526.0	16.25%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.666e-01	1.0000	523.0	16.16%	523.0	16.16%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-6.665e-01	1.0000	522.0	16.13%	522.0	16.13%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.665e-01	1.0000	522.0	16.13%	522.0	16.13%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-6.663e-01	1.0000	510.0	15.76%	510.0	15.76%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.660e-01	1.0000	495.0	15.30%	495.0	15.30%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-6.659e-01	1.0000	490.0	15.14%	490.0	15.14%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.657e-01	1.0000	481.0	14.86%	481.0	14.86%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-6.656e-01	1.0000	480.0	14.83%	480.0	14.83%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.656e-01	1.0000	478.0	14.77%	478.0	14.77%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-6.650e-01	1.0000	455.0	14.06%	455.0	14.06%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.647e-01	1.0000	442.0	13.66%	442.0	13.66%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.647e-01	1.0000	442.0	13.66%	442.0	13.66%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.646e-01	1.0000	439.0	13.57%	439.0	13.57%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.645e-01	1.0000	435.0	13.44%	435.0	13.44%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.643e-01	1.0000	429.0	13.26%	429.0	13.26%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-6.643e-01	1.0000	427.0	13.20%	427.0	13.20%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-6.641e-01	1.0000	422.0	13.04%	422.0	13.04%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.641e-01	1.0000	420.0	12.98%	420.0	12.98%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-6.640e-01	1.0000	417.0	12.89%	417.0	12.89%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.640e-01	1.0000	416.0	12.86%	416.0	12.86%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.637e-01	1.0000	406.0	12.55%	406.0	12.55%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.636e-01	1.0000	403.0	12.45%	403.0	12.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-6.636e-01	1.0000	403.0	12.45%	403.0	12.45%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.635e-01	1.0000	400.0	12.36%	400.0	12.36%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.634e-01	1.0000	397.0	12.27%	397.0	12.27%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.633e-01	1.0000	396.0	12.24%	396.0	12.24%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.633e-01	1.0000	394.0	12.18%	394.0	12.18%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-6.633e-01	1.0000	394.0	12.18%	394.0	12.18%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.632e-01	1.0000	391.0	12.08%	391.0	12.08%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.631e-01	1.0000	389.0	12.02%	389.0	12.02%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.631e-01	1.0000	389.0	12.02%	389.0	12.02%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.630e-01	1.0000	385.0	11.90%	385.0	11.90%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.629e-01	1.0000	383.0	11.84%	383.0	11.84%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-6.628e-01	1.0000	381.0	11.77%	381.0	11.77%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.628e-01	1.0000	381.0	11.77%	381.0	11.77%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-6.627e-01	1.0000	378.0	11.68%	378.0	11.68%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.625e-01	1.0000	371.0	11.46%	371.0	11.46%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.624e-01	1.0000	369.0	11.40%	369.0	11.40%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.622e-01	1.0000	363.0	11.22%	363.0	11.22%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.619e-01	1.0000	355.0	10.97%	355.0	10.97%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.618e-01	1.0000	351.0	10.85%	351.0	10.85%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.615e-01	1.0000	344.0	10.63%	344.0	10.63%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.609e-01	1.0000	329.0	10.17%	329.0	10.17%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-6.607e-01	1.0000	326.0	10.07%	326.0	10.07%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.607e-01	1.0000	325.0	10.04%	325.0	10.04%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.607e-01	1.0000	324.0	10.01%	324.0	10.01%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-6.600e-01	1.0000	310.0	9.58%	310.0	9.58%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.600e-01	1.0000	309.0	9.55%	309.0	9.55%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.600e-01	1.0000	309.0	9.55%	309.0	9.55%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.599e-01	1.0000	307.0	9.49%	307.0	9.49%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.598e-01	1.0000	306.0	9.46%	306.0	9.46%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-6.596e-01	1.0000	301.0	9.30%	301.0	9.30%
Tal1	CATCTG	1e0	-6.594e-01	1.0000	297.0	9.18%	297.0	9.18%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.591e-01	1.0000	291.0	8.99%	291.0	8.99%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-6.590e-01	1.0000	289.0	8.93%	289.0	8.93%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.589e-01	1.0000	288.0	8.90%	288.0	8.90%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.587e-01	1.0000	283.0	8.75%	283.0	8.75%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.585e-01	1.0000	280.0	8.65%	280.0	8.65%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-6.584e-01	1.0000	279.0	8.62%	279.0	8.62%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-6.584e-01	1.0000	278.0	8.59%	278.0	8.59%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-6.583e-01	1.0000	277.0	8.56%	277.0	8.56%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-6.583e-01	1.0000	277.0	8.56%	277.0	8.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.582e-01	1.0000	274.0	8.47%	274.0	8.47%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.578e-01	1.0000	268.0	8.28%	268.0	8.28%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.578e-01	1.0000	268.0	8.28%	268.0	8.28%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.578e-01	1.0000	267.0	8.25%	267.0	8.25%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.575e-01	1.0000	262.0	8.10%	262.0	8.10%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.573e-01	1.0000	259.0	8.00%	259.0	8.00%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-6.572e-01	1.0000	258.0	7.97%	258.0	7.97%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.556e-01	1.0000	234.0	7.23%	234.0	7.23%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.554e-01	1.0000	231.0	7.14%	231.0	7.14%
SeqBias: TA-repeat	TATATATATA	1e0	-6.553e-01	1.0000	230.0	7.11%	230.0	7.11%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-6.550e-01	1.0000	226.0	6.98%	226.0	6.98%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.547e-01	1.0000	222.0	6.86%	222.0	6.86%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-6.545e-01	1.0000	220.0	6.80%	220.0	6.80%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.543e-01	1.0000	217.0	6.71%	217.0	6.71%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-6.541e-01	1.0000	215.0	6.64%	215.0	6.64%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.540e-01	1.0000	214.0	6.61%	214.0	6.61%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-6.539e-01	1.0000	3024.0	93.45%	3024.0	93.45%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.538e-01	1.0000	211.0	6.52%	211.0	6.52%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.537e-01	1.0000	210.0	6.49%	210.0	6.49%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-6.535e-01	1.0000	208.0	6.43%	208.0	6.43%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-6.535e-01	1.0000	208.0	6.43%	208.0	6.43%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.534e-01	1.0000	206.0	6.37%	206.0	6.37%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.526e-01	1.0000	198.0	6.12%	198.0	6.12%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-6.526e-01	1.0000	198.0	6.12%	198.0	6.12%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.524e-01	1.0000	196.0	6.06%	196.0	6.06%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-6.521e-01	1.0000	193.0	5.96%	193.0	5.96%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.520e-01	1.0000	191.0	5.90%	191.0	5.90%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.517e-01	1.0000	188.0	5.81%	188.0	5.81%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.514e-01	1.0000	186.0	5.75%	186.0	5.75%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.513e-01	1.0000	185.0	5.72%	185.0	5.72%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-6.512e-01	1.0000	184.0	5.69%	184.0	5.69%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.510e-01	1.0000	182.0	5.62%	182.0	5.62%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.510e-01	1.0000	182.0	5.62%	182.0	5.62%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-6.509e-01	1.0000	181.0	5.59%	181.0	5.59%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.507e-01	1.0000	179.0	5.53%	179.0	5.53%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.505e-01	1.0000	177.0	5.47%	177.0	5.47%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.504e-01	1.0000	176.0	5.44%	176.0	5.44%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-6.500e-01	1.0000	173.0	5.35%	173.0	5.35%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.499e-01	1.0000	172.0	5.32%	172.0	5.32%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-6.498e-01	1.0000	171.0	5.28%	171.0	5.28%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.498e-01	1.0000	171.0	5.28%	171.0	5.28%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.497e-01	1.0000	170.0	5.25%	170.0	5.25%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-6.496e-01	1.0000	169.0	5.22%	169.0	5.22%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.496e-01	1.0000	169.0	5.22%	169.0	5.22%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-6.492e-01	1.0000	166.0	5.13%	166.0	5.13%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.487e-01	1.0000	162.0	5.01%	162.0	5.01%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.486e-01	1.0000	161.0	4.98%	161.0	4.98%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.486e-01	1.0000	161.0	4.98%	161.0	4.98%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.482e-01	1.0000	158.0	4.88%	158.0	4.88%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-6.482e-01	1.0000	158.0	4.88%	158.0	4.88%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-6.481e-01	1.0000	157.0	4.85%	157.0	4.85%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.481e-01	1.0000	157.0	4.85%	157.0	4.85%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.481e-01	1.0000	157.0	4.85%	157.0	4.85%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.478e-01	1.0000	155.0	4.79%	155.0	4.79%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.472e-01	1.0000	151.0	4.67%	151.0	4.67%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-6.472e-01	1.0000	151.0	4.67%	151.0	4.67%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.471e-01	1.0000	150.0	4.64%	150.0	4.64%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-6.468e-01	1.0000	148.0	4.57%	148.0	4.57%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.465e-01	1.0000	146.0	4.51%	146.0	4.51%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.465e-01	1.0000	146.0	4.51%	146.0	4.51%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.464e-01	1.0000	145.0	4.48%	145.0	4.48%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.464e-01	1.0000	145.0	4.48%	145.0	4.48%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.461e-01	1.0000	143.0	4.42%	143.0	4.42%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-6.459e-01	1.0000	142.0	4.39%	142.0	4.39%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.459e-01	1.0000	142.0	4.39%	142.0	4.39%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.457e-01	1.0000	141.0	4.36%	141.0	4.36%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-6.456e-01	1.0000	140.0	4.33%	140.0	4.33%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-6.451e-01	1.0000	137.0	4.23%	137.0	4.23%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.451e-01	1.0000	137.0	4.23%	137.0	4.23%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.448e-01	1.0000	135.0	4.17%	135.0	4.17%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.448e-01	1.0000	135.0	4.17%	135.0	4.17%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.446e-01	1.0000	134.0	4.14%	134.0	4.14%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-6.444e-01	1.0000	133.0	4.11%	133.0	4.11%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-6.443e-01	1.0000	132.0	4.08%	132.0	4.08%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.437e-01	1.0000	3107.0	96.01%	3107.0	96.01%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.432e-01	1.0000	126.0	3.89%	126.0	3.89%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.432e-01	1.0000	126.0	3.89%	126.0	3.89%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.430e-01	1.0000	125.0	3.86%	125.0	3.86%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-6.430e-01	1.0000	125.0	3.86%	125.0	3.86%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.428e-01	1.0000	124.0	3.83%	124.0	3.83%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-6.428e-01	1.0000	124.0	3.83%	124.0	3.83%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.426e-01	1.0000	123.0	3.80%	123.0	3.80%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.426e-01	1.0000	123.0	3.80%	123.0	3.80%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-6.422e-01	1.0000	121.0	3.74%	121.0	3.74%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-6.422e-01	1.0000	121.0	3.74%	121.0	3.74%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-6.420e-01	1.0000	120.0	3.71%	120.0	3.71%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.420e-01	1.0000	120.0	3.71%	120.0	3.71%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.420e-01	1.0000	120.0	3.71%	120.0	3.71%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.418e-01	1.0000	119.0	3.68%	119.0	3.68%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-6.416e-01	1.0000	118.0	3.65%	118.0	3.65%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-6.414e-01	1.0000	117.0	3.62%	117.0	3.62%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.412e-01	1.0000	116.0	3.58%	116.0	3.58%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-6.412e-01	1.0000	116.0	3.58%	116.0	3.58%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-6.410e-01	1.0000	115.0	3.55%	115.0	3.55%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.408e-01	1.0000	114.0	3.52%	114.0	3.52%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-6.406e-01	1.0000	113.0	3.49%	113.0	3.49%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-6.404e-01	1.0000	112.0	3.46%	112.0	3.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.401e-01	1.0000	111.0	3.43%	111.0	3.43%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.401e-01	1.0000	111.0	3.43%	111.0	3.43%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.399e-01	1.0000	110.0	3.40%	110.0	3.40%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.399e-01	1.0000	110.0	3.40%	110.0	3.40%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.399e-01	1.0000	110.0	3.40%	110.0	3.40%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.397e-01	1.0000	109.0	3.37%	109.0	3.37%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-6.387e-01	1.0000	105.0	3.24%	105.0	3.24%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.385e-01	1.0000	104.0	3.21%	104.0	3.21%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.377e-01	1.0000	101.0	3.12%	101.0	3.12%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-6.377e-01	1.0000	101.0	3.12%	101.0	3.12%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.375e-01	1.0000	100.0	3.09%	100.0	3.09%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.375e-01	1.0000	100.0	3.09%	100.0	3.09%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.358e-01	1.0000	94.0	2.90%	94.0	2.90%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-6.358e-01	1.0000	94.0	2.90%	94.0	2.90%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.356e-01	1.0000	93.0	2.87%	93.0	2.87%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.356e-01	1.0000	93.0	2.87%	93.0	2.87%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.353e-01	1.0000	92.0	2.84%	92.0	2.84%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.353e-01	1.0000	92.0	2.84%	92.0	2.84%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-6.353e-01	1.0000	92.0	2.84%	92.0	2.84%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.347e-01	1.0000	90.0	2.78%	90.0	2.78%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.344e-01	1.0000	89.0	2.75%	89.0	2.75%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-6.337e-01	1.0000	87.0	2.69%	87.0	2.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.337e-01	1.0000	87.0	2.69%	87.0	2.69%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.334e-01	1.0000	86.0	2.66%	86.0	2.66%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.331e-01	1.0000	85.0	2.63%	85.0	2.63%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-6.320e-01	1.0000	82.0	2.53%	82.0	2.53%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-6.313e-01	1.0000	80.0	2.47%	80.0	2.47%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-6.302e-01	1.0000	77.0	2.38%	77.0	2.38%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.298e-01	1.0000	76.0	2.35%	76.0	2.35%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.298e-01	1.0000	76.0	2.35%	76.0	2.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.294e-01	1.0000	75.0	2.32%	75.0	2.32%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.282e-01	1.0000	72.0	2.22%	72.0	2.22%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.282e-01	1.0000	72.0	2.22%	72.0	2.22%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.277e-01	1.0000	71.0	2.19%	71.0	2.19%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.277e-01	1.0000	71.0	2.19%	71.0	2.19%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.277e-01	1.0000	71.0	2.19%	71.0	2.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.273e-01	1.0000	70.0	2.16%	70.0	2.16%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-6.269e-01	1.0000	69.0	2.13%	69.0	2.13%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-6.264e-01	1.0000	68.0	2.10%	68.0	2.10%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-6.259e-01	1.0000	67.0	2.07%	67.0	2.07%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.245e-01	1.0000	64.0	1.98%	64.0	1.98%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.240e-01	1.0000	63.0	1.95%	63.0	1.95%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-6.234e-01	1.0000	62.0	1.92%	62.0	1.92%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.229e-01	1.0000	61.0	1.89%	61.0	1.89%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.229e-01	1.0000	61.0	1.89%	61.0	1.89%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.229e-01	1.0000	61.0	1.89%	61.0	1.89%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-6.223e-01	1.0000	60.0	1.85%	60.0	1.85%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.212e-01	1.0000	58.0	1.79%	58.0	1.79%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-6.206e-01	1.0000	57.0	1.76%	57.0	1.76%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.194e-01	1.0000	55.0	1.70%	55.0	1.70%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.187e-01	1.0000	54.0	1.67%	54.0	1.67%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.174e-01	1.0000	52.0	1.61%	52.0	1.61%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.167e-01	1.0000	51.0	1.58%	51.0	1.58%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-6.160e-01	1.0000	50.0	1.55%	50.0	1.55%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.153e-01	1.0000	49.0	1.51%	49.0	1.51%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.153e-01	1.0000	49.0	1.51%	49.0	1.51%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.153e-01	1.0000	49.0	1.51%	49.0	1.51%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-6.145e-01	1.0000	48.0	1.48%	48.0	1.48%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.137e-01	1.0000	47.0	1.45%	47.0	1.45%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.137e-01	1.0000	47.0	1.45%	47.0	1.45%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.137e-01	1.0000	47.0	1.45%	47.0	1.45%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-6.137e-01	1.0000	47.0	1.45%	47.0	1.45%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.129e-01	1.0000	46.0	1.42%	46.0	1.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.112e-01	1.0000	44.0	1.36%	44.0	1.36%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.103e-01	1.0000	43.0	1.33%	43.0	1.33%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-6.094e-01	1.0000	42.0	1.30%	42.0	1.30%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.084e-01	1.0000	41.0	1.27%	41.0	1.27%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.084e-01	1.0000	41.0	1.27%	41.0	1.27%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-6.084e-01	1.0000	41.0	1.27%	41.0	1.27%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-6.084e-01	1.0000	41.0	1.27%	41.0	1.27%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.074e-01	1.0000	40.0	1.24%	40.0	1.24%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-6.074e-01	1.0000	40.0	1.24%	40.0	1.24%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.064e-01	1.0000	39.0	1.21%	39.0	1.21%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.064e-01	1.0000	39.0	1.21%	39.0	1.21%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-6.064e-01	1.0000	39.0	1.21%	39.0	1.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-6.042e-01	1.0000	37.0	1.14%	37.0	1.14%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.042e-01	1.0000	37.0	1.14%	37.0	1.14%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.042e-01	1.0000	37.0	1.14%	37.0	1.14%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.042e-01	1.0000	37.0	1.14%	37.0	1.14%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.031e-01	1.0000	36.0	1.11%	36.0	1.11%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-6.031e-01	1.0000	36.0	1.11%	36.0	1.11%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-6.019e-01	1.0000	35.0	1.08%	35.0	1.08%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-6.019e-01	1.0000	35.0	1.08%	35.0	1.08%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.006e-01	1.0000	34.0	1.05%	34.0	1.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.980e-01	1.0000	32.0	0.99%	32.0	0.99%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.966e-01	1.0000	31.0	0.96%	31.0	0.96%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.951e-01	1.0000	30.0	0.93%	30.0	0.93%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-5.935e-01	1.0000	29.0	0.90%	29.0	0.90%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.935e-01	1.0000	29.0	0.90%	29.0	0.90%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.935e-01	1.0000	29.0	0.90%	29.0	0.90%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-5.918e-01	1.0000	28.0	0.87%	28.0	0.87%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-5.918e-01	1.0000	28.0	0.87%	28.0	0.87%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-5.918e-01	1.0000	28.0	0.87%	28.0	0.87%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.901e-01	1.0000	27.0	0.83%	27.0	0.83%
SeqBias: CG bias	SSSSSSSSSS	1e0	-5.863e-01	1.0000	3211.0	99.23%	3211.0	99.23%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.843e-01	1.0000	24.0	0.74%	24.0	0.74%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-5.843e-01	1.0000	24.0	0.74%	24.0	0.74%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-5.843e-01	1.0000	24.0	0.74%	24.0	0.74%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.821e-01	1.0000	23.0	0.71%	23.0	0.71%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.821e-01	1.0000	23.0	0.71%	23.0	0.71%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.821e-01	1.0000	23.0	0.71%	23.0	0.71%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.798e-01	1.0000	22.0	0.68%	22.0	0.68%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.798e-01	1.0000	22.0	0.68%	22.0	0.68%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-5.773e-01	1.0000	21.0	0.65%	21.0	0.65%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-5.747e-01	1.0000	20.0	0.62%	20.0	0.62%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-5.688e-01	1.0000	3218.0	99.44%	3218.0	99.44%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.688e-01	1.0000	18.0	0.56%	18.0	0.56%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.688e-01	1.0000	18.0	0.56%	18.0	0.56%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.655e-01	1.0000	17.0	0.53%	17.0	0.53%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-5.619e-01	1.0000	16.0	0.49%	16.0	0.49%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-5.619e-01	1.0000	16.0	0.49%	16.0	0.49%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.579e-01	1.0000	15.0	0.46%	15.0	0.46%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.488e-01	1.0000	13.0	0.40%	13.0	0.40%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.488e-01	1.0000	13.0	0.40%	13.0	0.40%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-5.488e-01	1.0000	13.0	0.40%	13.0	0.40%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-5.435e-01	1.0000	12.0	0.37%	12.0	0.37%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-5.374e-01	1.0000	11.0	0.34%	11.0	0.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-5.374e-01	1.0000	11.0	0.34%	11.0	0.34%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.374e-01	1.0000	11.0	0.34%	11.0	0.34%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-5.374e-01	1.0000	11.0	0.34%	11.0	0.34%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.306e-01	1.0000	10.0	0.31%	10.0	0.31%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-5.306e-01	1.0000	10.0	0.31%	10.0	0.31%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.228e-01	1.0000	9.0	0.28%	9.0	0.28%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-5.228e-01	1.0000	9.0	0.28%	9.0	0.28%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.228e-01	1.0000	9.0	0.28%	9.0	0.28%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.228e-01	1.0000	9.0	0.28%	9.0	0.28%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.136e-01	1.0000	8.0	0.25%	8.0	0.25%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.136e-01	1.0000	8.0	0.25%	8.0	0.25%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.136e-01	1.0000	8.0	0.25%	8.0	0.25%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-5.028e-01	1.0000	7.0	0.22%	7.0	0.22%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.896e-01	1.0000	6.0	0.19%	6.0	0.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.896e-01	1.0000	6.0	0.19%	6.0	0.19%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.896e-01	1.0000	6.0	0.19%	6.0	0.19%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-4.730e-01	1.0000	5.0	0.15%	5.0	0.15%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.513e-01	1.0000	4.0	0.12%	4.0	0.12%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.513e-01	1.0000	4.0	0.12%	4.0	0.12%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-4.513e-01	1.0000	4.0	0.12%	4.0	0.12%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-4.211e-01	1.0000	3.0	0.09%	3.0	0.09%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-3.746e-01	1.0000	3234.0	99.94%	3234.0	99.94%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-3.746e-01	1.0000	2.0	0.06%	2.0	0.06%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.746e-01	1.0000	2.0	0.06%	2.0	0.06%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-2.876e-01	1.0000	3235.0	99.97%	3235.0	99.97%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.876e-01	1.0000	1.0	0.03%	1.0	0.03%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.876e-01	1.0000	1.0	0.03%	1.0	0.03%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.876e-01	1.0000	1.0	0.03%	1.0	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	3236.0	100.00%	3236.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	3236.0	100.00%	3236.0	100.00%