Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 9370)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 12415)	% of Background Sequences with Motif
SeqBias: A/T bias	WWWWWWWWWW	1e-1	-2.520e+00	1.0000	3167.0	33.80%	4082.1	32.88%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.295e+00	1.0000	186.0	1.98%	217.0	1.75%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.140e+00	1.0000	2109.0	22.51%	2709.3	21.82%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.997e+00	1.0000	2368.0	25.27%	3055.3	24.61%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.965e+00	1.0000	196.0	2.09%	233.9	1.88%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.901e+00	1.0000	1147.0	12.24%	1461.0	11.77%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.885e+00	1.0000	248.0	2.65%	300.3	2.42%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.729e+00	1.0000	1420.0	15.15%	1824.0	14.69%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.711e+00	1.0000	1663.0	17.75%	2143.8	17.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.709e+00	1.0000	1453.0	15.51%	1868.8	15.05%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.696e+00	1.0000	139.0	1.48%	165.5	1.33%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.696e+00	1.0000	139.0	1.48%	165.6	1.33%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.689e+00	1.0000	221.0	2.36%	269.3	2.17%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.676e+00	1.0000	1748.0	18.65%	2256.7	18.18%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.624e+00	1.0000	206.0	2.20%	251.7	2.03%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-1.603e+00	1.0000	1506.0	16.07%	1942.1	15.64%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.556e+00	1.0000	266.0	2.84%	329.0	2.65%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.548e+00	1.0000	1604.0	17.12%	2073.2	16.70%
Tal1	CATCTG	1e0	-1.516e+00	1.0000	647.0	6.90%	823.6	6.63%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.486e+00	1.0000	282.0	3.01%	351.8	2.83%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.478e+00	1.0000	40.0	0.43%	44.2	0.36%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.450e+00	1.0000	460.0	4.91%	582.5	4.69%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.435e+00	1.0000	34.0	0.36%	38.0	0.31%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.414e+00	1.0000	228.0	2.43%	283.9	2.29%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.414e+00	1.0000	895.0	9.55%	1150.5	9.27%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.412e+00	1.0000	2306.0	24.61%	3003.7	24.20%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.384e+00	1.0000	2159.0	23.04%	2811.7	22.65%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.364e+00	1.0000	266.0	2.84%	333.9	2.69%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.349e+00	1.0000	106.0	1.13%	128.6	1.04%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.345e+00	1.0000	390.0	4.16%	494.2	3.98%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.341e+00	1.0000	216.0	2.30%	269.4	2.17%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.338e+00	1.0000	3241.0	34.59%	4241.1	34.16%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.332e+00	1.0000	1373.0	14.65%	1780.8	14.34%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.331e+00	1.0000	2118.0	22.60%	2760.2	22.23%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.326e+00	1.0000	208.0	2.22%	259.0	2.09%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.322e+00	1.0000	1499.0	16.00%	1946.4	15.68%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.304e+00	1.0000	2597.0	27.71%	3393.7	27.34%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.295e+00	1.0000	271.0	2.89%	341.9	2.75%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.294e+00	1.0000	178.0	1.90%	221.8	1.79%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.262e+00	1.0000	1746.0	18.63%	2274.7	18.32%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.241e+00	1.0000	260.0	2.77%	329.0	2.65%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.239e+00	1.0000	463.0	4.94%	592.9	4.78%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.236e+00	1.0000	36.0	0.38%	41.7	0.34%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.234e+00	1.0000	44.0	0.47%	51.2	0.41%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.232e+00	1.0000	222.0	2.37%	279.7	2.25%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.219e+00	1.0000	1981.0	21.14%	2586.5	20.83%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.213e+00	1.0000	51.0	0.54%	60.7	0.49%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.207e+00	1.0000	548.0	5.85%	704.7	5.68%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.177e+00	1.0000	742.0	7.92%	959.4	7.73%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.169e+00	1.0000	975.0	10.40%	1265.3	10.19%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.166e+00	1.0000	12.0	0.13%	12.9	0.10%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.150e+00	1.0000	25.0	0.27%	28.6	0.23%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.150e+00	1.0000	25.0	0.27%	29.0	0.23%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.129e+00	1.0000	1017.0	10.85%	1322.1	10.65%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.127e+00	1.0000	1356.0	14.47%	1768.7	14.25%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.125e+00	1.0000	91.0	0.97%	112.3	0.90%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.123e+00	1.0000	11.0	0.12%	11.1	0.09%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.116e+00	1.0000	87.0	0.93%	107.9	0.87%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.114e+00	1.0000	156.0	1.66%	196.2	1.58%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.106e+00	1.0000	246.0	2.63%	313.8	2.53%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.096e+00	1.0000	131.0	1.40%	164.4	1.32%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.095e+00	1.0000	487.0	5.20%	628.2	5.06%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.093e+00	1.0000	301.0	3.21%	386.0	3.11%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.086e+00	1.0000	89.0	0.95%	110.7	0.89%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.080e+00	1.0000	927.0	9.89%	1206.4	9.72%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.080e+00	1.0000	224.0	2.39%	285.2	2.30%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.079e+00	1.0000	10.0	0.11%	10.7	0.09%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.059e+00	1.0000	573.0	6.11%	742.2	5.98%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.047e+00	1.0000	349.0	3.72%	449.9	3.62%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.041e+00	1.0000	211.0	2.25%	269.4	2.17%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.037e+00	1.0000	83.0	0.89%	104.0	0.84%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.034e+00	1.0000	2095.0	22.36%	2748.6	22.14%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.034e+00	1.0000	174.0	1.86%	221.6	1.78%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.027e+00	1.0000	995.0	10.62%	1298.7	10.46%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.017e+00	1.0000	82.0	0.88%	102.5	0.83%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.017e+00	1.0000	2294.0	24.48%	3012.2	24.26%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.015e+00	1.0000	13.0	0.14%	14.9	0.12%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.008e+00	1.0000	251.0	2.68%	323.0	2.60%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.007e+00	1.0000	2111.0	22.53%	2771.6	22.33%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.005e+00	1.0000	2039.0	21.76%	2676.9	21.56%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.004e+00	1.0000	630.0	6.72%	819.4	6.60%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.003e+00	1.0000	32.0	0.34%	38.5	0.31%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.003e+00	1.0000	64.0	0.68%	79.8	0.64%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.000e+00	1.0000	5019.0	53.56%	6619.7	53.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.961e-01	1.0000	263.0	2.81%	338.5	2.73%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-9.923e-01	1.0000	3.0	0.03%	3.0	0.02%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-9.882e-01	1.0000	720.0	7.68%	938.6	7.56%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-9.880e-01	1.0000	285.0	3.04%	367.1	2.96%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-9.856e-01	1.0000	187.0	2.00%	239.7	1.93%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-9.834e-01	1.0000	8.0	0.09%	8.2	0.07%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-9.809e-01	1.0000	474.0	5.06%	615.5	4.96%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-9.774e-01	1.0000	20.0	0.21%	23.8	0.19%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.717e-01	1.0000	762.0	8.13%	994.4	8.01%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.643e-01	1.0000	218.0	2.33%	280.5	2.26%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-9.614e-01	1.0000	208.0	2.22%	267.6	2.16%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-9.589e-01	1.0000	2362.0	25.21%	3106.4	25.02%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.538e-01	1.0000	375.0	4.00%	486.9	3.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-9.495e-01	1.0000	448.0	4.78%	582.5	4.69%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-9.464e-01	1.0000	125.0	1.33%	159.8	1.29%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.394e-01	1.0000	141.0	1.50%	180.8	1.46%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-9.327e-01	1.0000	101.0	1.08%	128.5	1.04%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.307e-01	1.0000	26.0	0.28%	31.3	0.25%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.192e-01	1.0000	285.0	3.04%	369.3	2.98%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-9.105e-01	1.0000	53.0	0.57%	66.2	0.53%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.073e-01	1.0000	181.0	1.93%	233.5	1.88%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.007e-01	1.0000	76.0	0.81%	96.4	0.78%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-8.960e-01	1.0000	254.0	2.71%	329.4	2.65%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-8.944e-01	1.0000	489.0	5.22%	638.7	5.15%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-8.938e-01	1.0000	69.0	0.74%	87.6	0.71%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-8.857e-01	1.0000	2475.0	26.41%	3261.7	26.27%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.850e-01	1.0000	237.0	2.53%	307.3	2.48%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.843e-01	1.0000	1443.0	15.40%	1897.3	15.28%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-8.832e-01	1.0000	28.0	0.30%	34.1	0.27%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.828e-01	1.0000	418.0	4.46%	545.1	4.39%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-8.809e-01	1.0000	195.0	2.08%	252.6	2.03%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-8.807e-01	1.0000	111.0	1.18%	142.1	1.14%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.806e-01	1.0000	124.0	1.32%	159.3	1.28%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-8.800e-01	1.0000	65.0	0.69%	82.2	0.66%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-8.797e-01	1.0000	10.0	0.11%	11.8	0.09%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-8.767e-01	1.0000	114.0	1.22%	146.8	1.18%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.753e-01	1.0000	38.0	0.41%	47.3	0.38%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.743e-01	1.0000	6.0	0.06%	6.7	0.05%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-8.738e-01	1.0000	188.0	2.01%	243.1	1.96%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-8.675e-01	1.0000	1003.0	10.70%	1317.8	10.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.652e-01	1.0000	302.0	3.22%	393.3	3.17%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-8.647e-01	1.0000	51.0	0.54%	64.2	0.52%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-8.587e-01	1.0000	129.0	1.38%	166.5	1.34%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.537e-01	1.0000	67.0	0.71%	85.6	0.69%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.475e-01	1.0000	83.0	0.89%	106.7	0.86%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.448e-01	1.0000	3482.0	37.16%	4597.1	37.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-8.434e-01	1.0000	344.0	3.67%	449.9	3.62%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-8.420e-01	1.0000	115.0	1.23%	148.8	1.20%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-8.404e-01	1.0000	1434.0	15.30%	1888.3	15.21%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.399e-01	1.0000	814.0	8.69%	1069.7	8.62%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-8.379e-01	1.0000	315.0	3.36%	411.2	3.31%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-8.297e-01	1.0000	143.0	1.53%	185.4	1.49%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.290e-01	1.0000	1956.0	20.87%	2579.9	20.78%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.238e-01	1.0000	367.0	3.92%	480.2	3.87%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-8.230e-01	1.0000	1048.0	11.18%	1379.1	11.11%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-8.153e-01	1.0000	785.0	8.38%	1032.3	8.32%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-8.132e-01	1.0000	221.0	2.36%	288.8	2.33%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-8.129e-01	1.0000	513.0	5.47%	673.3	5.42%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.125e-01	1.0000	1130.0	12.06%	1488.1	11.99%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-8.119e-01	1.0000	5.0	0.05%	5.5	0.04%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-8.071e-01	1.0000	318.0	3.39%	416.9	3.36%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.035e-01	1.0000	32.0	0.34%	40.8	0.33%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-7.966e-01	1.0000	542.0	5.78%	712.9	5.74%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.956e-01	1.0000	370.0	3.95%	485.1	3.91%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-7.942e-01	1.0000	172.0	1.84%	224.6	1.81%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-7.929e-01	1.0000	260.0	2.77%	340.3	2.74%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-7.917e-01	1.0000	613.0	6.54%	806.2	6.49%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.911e-01	1.0000	137.0	1.46%	178.8	1.44%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-7.911e-01	1.0000	25.0	0.27%	31.5	0.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.869e-01	1.0000	184.0	1.96%	240.7	1.94%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.818e-01	1.0000	3279.0	34.99%	4334.9	34.92%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-7.807e-01	1.0000	337.0	3.60%	443.0	3.57%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.771e-01	1.0000	18.0	0.19%	22.0	0.18%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-7.769e-01	1.0000	158.0	1.69%	206.3	1.66%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.700e-01	1.0000	560.0	5.98%	737.9	5.94%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.676e-01	1.0000	21.0	0.22%	26.6	0.21%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.676e-01	1.0000	88.0	0.94%	115.0	0.93%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.650e-01	1.0000	91.0	0.97%	118.5	0.95%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.599e-01	1.0000	24.0	0.26%	30.1	0.24%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.579e-01	1.0000	59.0	0.63%	76.4	0.62%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.547e-01	1.0000	62.0	0.66%	80.1	0.64%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-7.491e-01	1.0000	14.0	0.15%	18.0	0.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-7.487e-01	1.0000	811.0	8.65%	1070.6	8.62%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-7.460e-01	1.0000	71.0	0.76%	92.5	0.75%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-7.454e-01	1.0000	143.0	1.53%	187.3	1.51%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.430e-01	1.0000	33.0	0.35%	42.9	0.35%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-7.411e-01	1.0000	3227.0	34.44%	4269.8	34.40%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.324e-01	1.0000	1250.0	13.34%	1652.3	13.31%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-7.282e-01	1.0000	45.0	0.48%	58.6	0.47%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-7.262e-01	1.0000	9333.0	99.59%	12362.5	99.59%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-7.242e-01	1.0000	6363.0	67.90%	8425.3	67.87%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-7.226e-01	1.0000	587.0	6.26%	775.7	6.25%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-7.202e-01	1.0000	110.0	1.17%	144.9	1.17%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.184e-01	1.0000	144.0	1.54%	189.4	1.53%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-7.146e-01	1.0000	218.0	2.33%	287.1	2.31%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-7.141e-01	1.0000	388.0	4.14%	512.1	4.13%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-7.123e-01	1.0000	607.0	6.48%	802.0	6.46%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.056e-01	1.0000	44.0	0.47%	57.5	0.46%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.056e-01	1.0000	44.0	0.47%	57.5	0.46%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-7.049e-01	1.0000	430.0	4.59%	568.9	4.58%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.008e-01	1.0000	229.0	2.44%	302.4	2.44%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.000e-01	1.0000	454.0	4.84%	600.9	4.84%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.997e-01	1.0000	19.0	0.20%	24.6	0.20%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.945e-01	1.0000	2834.0	30.24%	3753.2	30.23%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.941e-01	1.0000	25.0	0.27%	33.0	0.27%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-6.918e-01	1.0000	28.0	0.30%	36.6	0.29%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.909e-01	1.0000	228.0	2.43%	301.8	2.43%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.826e-01	1.0000	3634.0	38.78%	4814.7	38.78%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.808e-01	1.0000	1011.0	10.79%	1340.0	10.79%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-6.779e-01	1.0000	55.0	0.59%	72.5	0.58%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-6.779e-01	1.0000	55.0	0.59%	72.9	0.59%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.707e-01	1.0000	1012.0	10.80%	1341.8	10.81%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-6.686e-01	1.0000	689.0	7.35%	913.8	7.36%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.654e-01	1.0000	15.0	0.16%	19.7	0.16%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.643e-01	1.0000	158.0	1.69%	209.9	1.69%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-6.639e-01	1.0000	1284.0	13.70%	1702.0	13.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.616e-01	1.0000	112.0	1.20%	148.5	1.20%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-6.581e-01	1.0000	54.0	0.58%	71.4	0.58%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-6.575e-01	1.0000	57.0	0.61%	75.3	0.61%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.558e-01	1.0000	362.0	3.86%	480.8	3.87%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.556e-01	1.0000	512.0	5.46%	679.7	5.47%
SeqBias: TA-repeat	TATATATATA	1e0	-6.550e-01	1.0000	564.0	6.02%	748.1	6.03%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-6.547e-01	1.0000	420.0	4.48%	557.5	4.49%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.537e-01	1.0000	1684.0	17.97%	2233.9	17.99%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-6.525e-01	1.0000	84.0	0.90%	111.6	0.90%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.486e-01	1.0000	2783.0	29.70%	3690.3	29.73%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.476e-01	1.0000	1492.0	15.92%	1979.6	15.95%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-6.384e-01	1.0000	53.0	0.57%	71.0	0.57%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-6.341e-01	1.0000	113.0	1.21%	150.3	1.21%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.313e-01	1.0000	234.0	2.50%	311.5	2.51%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-6.308e-01	1.0000	927.0	9.89%	1231.1	9.92%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-6.283e-01	1.0000	170.0	1.81%	226.8	1.83%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.279e-01	1.0000	404.0	4.31%	538.0	4.33%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.227e-01	1.0000	385.0	4.11%	512.4	4.13%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.218e-01	1.0000	11.0	0.12%	14.6	0.12%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.218e-01	1.0000	11.0	0.12%	14.5	0.12%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-6.196e-01	1.0000	415.0	4.43%	552.1	4.45%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.188e-01	1.0000	52.0	0.55%	69.4	0.56%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.164e-01	1.0000	3698.0	39.46%	4906.0	39.52%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.137e-01	1.0000	8.0	0.09%	10.7	0.09%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.137e-01	1.0000	8.0	0.09%	10.7	0.09%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.009e-01	1.0000	279.0	2.98%	372.6	3.00%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.962e-01	1.0000	161.0	1.72%	215.5	1.74%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.940e-01	1.0000	104.0	1.11%	139.4	1.12%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.933e-01	1.0000	98.0	1.05%	131.4	1.06%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-5.925e-01	1.0000	6003.0	64.06%	7962.1	64.14%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-5.887e-01	1.0000	1214.0	12.95%	1615.6	13.01%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-5.885e-01	1.0000	468.0	4.99%	624.7	5.03%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.873e-01	1.0000	13.0	0.14%	17.1	0.14%
SeqBias: CA-repeat	CACACACACA	1e0	-5.864e-01	1.0000	4358.0	46.51%	5784.4	46.60%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-5.838e-01	1.0000	130.0	1.39%	174.1	1.40%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-5.813e-01	1.0000	7564.0	80.72%	10029.7	80.79%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.766e-01	1.0000	10.0	0.11%	13.9	0.11%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.761e-01	1.0000	44.0	0.47%	59.3	0.48%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.755e-01	1.0000	1165.0	12.43%	1551.1	12.49%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.734e-01	1.0000	705.0	7.52%	940.7	7.58%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-5.712e-01	1.0000	38.0	0.41%	51.0	0.41%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-5.648e-01	1.0000	32.0	0.34%	43.7	0.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-5.588e-01	1.0000	75.0	0.80%	101.3	0.82%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.585e-01	1.0000	696.0	7.43%	929.4	7.49%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-5.576e-01	1.0000	1048.0	11.18%	1397.7	11.26%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.563e-01	1.0000	1142.0	12.19%	1522.5	12.26%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-5.538e-01	1.0000	5634.0	60.12%	7478.0	60.24%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-5.456e-01	1.0000	308.0	3.29%	413.6	3.33%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-5.452e-01	1.0000	34.0	0.36%	46.3	0.37%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-5.445e-01	1.0000	272.0	2.90%	365.5	2.94%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.388e-01	1.0000	94.0	1.00%	127.9	1.03%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.363e-01	1.0000	88.0	0.94%	119.7	0.96%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.314e-01	1.0000	576.0	6.15%	771.1	6.21%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-5.274e-01	1.0000	178.0	1.90%	240.2	1.93%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.273e-01	1.0000	131.0	1.40%	177.1	1.43%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-5.239e-01	1.0000	216.0	2.30%	291.0	2.34%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.210e-01	1.0000	195.0	2.08%	263.8	2.13%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.185e-01	1.0000	987.0	10.53%	1319.3	10.63%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-5.162e-01	1.0000	130.0	1.39%	176.4	1.42%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-5.158e-01	1.0000	218.0	2.33%	294.6	2.37%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.100e-01	1.0000	27.0	0.29%	37.3	0.30%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.091e-01	1.0000	179.0	1.91%	242.7	1.95%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-5.070e-01	1.0000	106.0	1.13%	144.7	1.17%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-5.040e-01	1.0000	9370.0	99.99%	12412.6	99.99%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.013e-01	1.0000	6.0	0.06%	8.6	0.07%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-5.013e-01	1.0000	6.0	0.06%	8.9	0.07%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-4.993e-01	1.0000	32.0	0.34%	44.7	0.36%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.958e-01	1.0000	68.0	0.73%	93.1	0.75%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.921e-01	1.0000	4552.0	48.58%	6053.6	48.76%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-4.909e-01	1.0000	425.0	4.54%	572.5	4.61%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.844e-01	1.0000	1202.0	12.83%	1608.0	12.95%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.840e-01	1.0000	185.0	1.97%	251.1	2.02%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-4.834e-01	1.0000	56.0	0.60%	77.1	0.62%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-4.786e-01	1.0000	6800.0	72.56%	9030.6	72.75%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.709e-01	1.0000	627.0	6.69%	843.8	6.80%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-4.657e-01	1.0000	335.0	3.57%	453.1	3.65%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-4.596e-01	1.0000	393.0	4.19%	531.8	4.28%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-4.529e-01	1.0000	333.0	3.55%	451.8	3.64%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.524e-01	1.0000	9355.0	99.83%	12394.5	99.84%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-4.486e-01	1.0000	9176.0	97.92%	12163.2	97.98%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.435e-01	1.0000	166.0	1.77%	227.9	1.84%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.392e-01	1.0000	472.0	5.04%	638.7	5.14%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-4.375e-01	1.0000	278.0	2.97%	378.4	3.05%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.374e-01	1.0000	451.0	4.81%	610.8	4.92%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.327e-01	1.0000	1148.0	12.25%	1541.6	12.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-4.310e-01	1.0000	657.0	7.01%	886.1	7.14%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.157e-01	1.0000	1245.0	13.29%	1672.3	13.47%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-4.154e-01	1.0000	177.0	1.89%	243.6	1.96%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.133e-01	1.0000	191.0	2.04%	262.5	2.11%
SeqBias: CG bias	SSSSSSSSSS	1e0	-4.133e-01	1.0000	9345.0	99.72%	12382.1	99.74%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.122e-01	1.0000	137.0	1.46%	189.7	1.53%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.089e-01	1.0000	28.0	0.30%	40.5	0.33%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.034e-01	1.0000	224.0	2.39%	307.9	2.48%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.983e-01	1.0000	229.0	2.44%	314.3	2.53%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.976e-01	1.0000	172.0	1.84%	237.2	1.91%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.947e-01	1.0000	758.0	8.09%	1024.3	8.25%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.934e-01	1.0000	1166.0	12.44%	1569.2	12.64%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.923e-01	1.0000	1553.0	16.57%	2085.9	16.80%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-3.903e-01	1.0000	9328.0	99.54%	12361.1	99.57%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.799e-01	1.0000	153.0	1.63%	212.5	1.71%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.763e-01	1.0000	147.0	1.57%	204.0	1.64%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-3.762e-01	1.0000	1331.0	14.20%	1792.0	14.44%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-3.747e-01	1.0000	1151.0	12.28%	1551.6	12.50%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-3.746e-01	1.0000	990.0	10.56%	1336.1	10.76%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.739e-01	1.0000	57.0	0.61%	81.6	0.66%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-3.475e-01	1.0000	338.0	3.61%	464.9	3.75%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-3.421e-01	1.0000	357.0	3.81%	490.3	3.95%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.368e-01	1.0000	145.0	1.55%	203.2	1.64%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.302e-01	1.0000	1377.0	14.69%	1858.6	14.97%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.183e-01	1.0000	338.0	3.61%	466.3	3.76%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.181e-01	1.0000	159.0	1.70%	223.9	1.80%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.151e-01	1.0000	443.0	4.73%	608.2	4.90%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.008e-01	1.0000	253.0	2.70%	352.3	2.84%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.984e-01	1.0000	159.0	1.70%	224.8	1.81%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.982e-01	1.0000	365.0	3.89%	504.4	4.06%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.952e-01	1.0000	3.0	0.03%	5.4	0.04%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-2.944e-01	1.0000	25.0	0.27%	38.7	0.31%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-2.792e-01	1.0000	1108.0	11.82%	1505.3	12.13%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-2.759e-01	1.0000	1521.0	16.23%	2059.0	16.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.736e-01	1.0000	1514.0	16.16%	2049.2	16.51%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-2.702e-01	1.0000	1178.0	12.57%	1600.2	12.89%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.662e-01	1.0000	288.0	3.07%	402.7	3.24%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-2.550e-01	1.0000	1310.0	13.98%	1779.4	14.33%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-2.449e-01	1.0000	417.0	4.45%	579.8	4.67%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.422e-01	1.0000	1778.0	18.97%	2407.4	19.39%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-2.336e-01	1.0000	1086.0	11.59%	1482.3	11.94%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.331e-01	1.0000	1675.0	17.87%	2271.8	18.30%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.319e-01	1.0000	657.0	7.01%	905.1	7.29%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-2.251e-01	1.0000	646.0	6.89%	891.8	7.18%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.217e-01	1.0000	3348.0	35.73%	4503.2	36.27%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.117e-01	1.0000	120.0	1.28%	175.3	1.41%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.083e-01	1.0000	1487.0	15.87%	2024.8	16.31%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.046e-01	1.0000	1.0	0.01%	2.8	0.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.046e-01	1.0000	1.0	0.01%	2.1	0.02%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.001e-01	1.0000	482.0	5.14%	672.2	5.41%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.933e-01	1.0000	742.0	7.92%	1025.3	8.26%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.915e-01	1.0000	97.0	1.04%	144.2	1.16%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.880e-01	1.0000	70.0	0.75%	106.7	0.86%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.800e-01	1.0000	1086.0	11.59%	1492.0	12.02%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.793e-01	1.0000	1251.0	13.35%	1713.0	13.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.745e-01	1.0000	576.0	6.15%	803.9	6.48%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.678e-01	1.0000	5097.0	54.39%	6837.8	55.08%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.668e-01	1.0000	838.0	8.94%	1159.3	9.34%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.657e-01	1.0000	2184.0	23.31%	2966.5	23.90%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-1.638e-01	1.0000	985.0	10.51%	1358.4	10.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.579e-01	1.0000	2419.0	25.81%	3282.5	26.44%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.537e-01	1.0000	1911.0	20.39%	2604.8	20.98%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.503e-01	1.0000	4697.0	50.12%	6313.4	50.86%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.385e-01	1.0000	1033.0	11.02%	1428.7	11.51%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.382e-01	1.0000	1922.0	20.51%	2623.3	21.13%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.278e-01	1.0000	438.0	4.67%	622.5	5.01%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.261e-01	1.0000	793.0	8.46%	1106.2	8.91%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.218e-01	1.0000	596.0	6.36%	839.5	6.76%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.212e-01	1.0000	1597.0	17.04%	2192.3	17.66%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.199e-01	1.0000	764.0	8.15%	1068.8	8.61%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.184e-01	1.0000	270.0	2.88%	392.9	3.17%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.142e-01	1.0000	691.0	7.37%	970.2	7.82%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-1.137e-01	1.0000	872.0	9.31%	1216.0	9.80%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.080e-01	1.0000	279.0	2.98%	406.9	3.28%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-9.849e-02	1.0000	2818.0	30.07%	3835.9	30.90%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-9.839e-02	1.0000	1137.0	12.13%	1579.0	12.72%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.561e-02	1.0000	870.0	9.28%	1218.1	9.81%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-9.257e-02	1.0000	1163.0	12.41%	1616.0	13.02%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-8.878e-02	1.0000	6495.0	69.31%	8710.9	70.17%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.145e-02	1.0000	2.0	0.02%	6.4	0.05%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.800e-02	1.0000	756.0	8.07%	1068.2	8.60%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-7.711e-02	1.0000	2702.0	28.83%	3690.4	29.73%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.089e-02	1.0000	429.0	4.58%	624.5	5.03%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-5.281e-02	1.0000	121.0	1.29%	192.9	1.55%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-5.157e-02	1.0000	1287.0	13.73%	1802.0	14.52%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.932e-02	1.0000	301.0	3.21%	449.4	3.62%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.161e-02	1.0000	46.0	0.49%	84.3	0.68%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-3.081e-02	1.0000	2017.0	21.52%	2803.9	22.59%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.677e-02	1.0000	1535.0	16.38%	2168.6	17.47%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-9.439e-03	1.0000	2208.0	23.56%	3095.2	24.93%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.572e-03	1.0000	366.0	3.91%	567.2	4.57%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-7.174e-03	1.0000	1500.0	16.01%	2141.7	17.25%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.239e-03	1.0000	164.0	1.75%	277.6	2.24%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.295e-03	1.0000	178.0	1.90%	302.5	2.44%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-6.930e-04	1.0000	1441.0	15.38%	2108.4	16.98%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-6.830e-04	1.0000	1605.0	17.13%	2334.6	18.81%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-3.690e-04	1.0000	801.0	8.55%	1226.3	9.88%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.070e-04	1.0000	1658.0	17.69%	2430.0	19.57%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	84.0	0.90%	334.8	2.70%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	0.000e+00	1.0000	9371.0	100.00%	12414.0	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	9371.0	100.00%	12414.0	100.00%