cmd = /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HughesZnfData/KLF12/out/peak/idr/pseudo_reps/rep1/KLF12_rep1-pr.IDR0.05.filt.noYY1.fa fasta /srv/persistent/imk1/TFBindingPredictionProject/HughesZnfData/KLF12/out/peak/idr/pseudo_reps/rep1/KLF12_rep1-pr.IDR0.05.filt.noYY1VsAll.HomerResults -fasta /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HughesZnfData/KLF12/out/peak/idr/pseudo_reps/rep1/KLF12_rep1-pr.IDR0.05.filt.fa