Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4180)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 5667)	% of Background Sequences with Motif
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.265e+00	1.0000	3491.0	83.52%	4677.9	82.54%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.194e+00	1.0000	976.0	23.35%	1263.4	22.29%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.823e+00	1.0000	610.0	14.59%	786.5	13.88%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.787e+00	1.0000	1462.0	34.98%	1928.1	34.02%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-1.734e+00	1.0000	3545.0	84.81%	4766.8	84.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.713e+00	1.0000	2170.0	51.91%	2888.4	50.97%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.703e+00	1.0000	38.0	0.91%	41.3	0.73%
Tal1	CATCTG	1e0	-1.657e+00	1.0000	220.0	5.26%	275.1	4.85%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.625e+00	1.0000	527.0	12.61%	681.4	12.02%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.506e+00	1.0000	490.0	11.72%	635.5	11.21%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.482e+00	1.0000	229.0	5.48%	290.9	5.13%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.474e+00	1.0000	27.0	0.65%	29.7	0.52%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.434e+00	1.0000	298.0	7.13%	382.8	6.75%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.398e+00	1.0000	41.0	0.98%	47.7	0.84%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-1.387e+00	1.0000	1302.0	31.15%	1728.7	30.50%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.387e+00	1.0000	644.0	15.41%	844.7	14.91%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.369e+00	1.0000	76.0	1.82%	92.9	1.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.342e+00	1.0000	68.0	1.63%	82.9	1.46%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.303e+00	1.0000	1047.0	25.05%	1388.6	24.50%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.285e+00	1.0000	76.0	1.82%	93.0	1.64%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.255e+00	1.0000	267.0	6.39%	345.9	6.10%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.249e+00	1.0000	465.0	11.12%	609.8	10.76%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.248e+00	1.0000	21.0	0.50%	23.8	0.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.245e+00	1.0000	1510.0	36.12%	2015.8	35.57%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.238e+00	1.0000	64.0	1.53%	78.1	1.38%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.232e+00	1.0000	244.0	5.84%	315.3	5.56%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-1.218e+00	1.0000	28.0	0.67%	32.1	0.57%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.212e+00	1.0000	63.0	1.51%	77.7	1.37%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.197e+00	1.0000	1620.0	38.76%	2166.8	38.23%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.196e+00	1.0000	59.0	1.41%	72.7	1.28%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.185e+00	1.0000	11.0	0.26%	11.8	0.21%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.181e+00	1.0000	75.0	1.79%	93.5	1.65%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.173e+00	1.0000	23.0	0.55%	26.3	0.46%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.156e+00	1.0000	308.0	7.37%	402.5	7.10%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.155e+00	1.0000	37.0	0.89%	44.5	0.79%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.144e+00	1.0000	307.0	7.34%	401.6	7.09%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.136e+00	1.0000	10.0	0.24%	10.7	0.19%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.128e+00	1.0000	76.0	1.82%	95.4	1.68%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.128e+00	1.0000	43.0	1.03%	52.5	0.93%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.124e+00	1.0000	356.0	8.52%	467.3	8.25%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.109e+00	1.0000	25.0	0.60%	29.6	0.52%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.098e+00	1.0000	495.0	11.84%	654.7	11.55%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.088e+00	1.0000	45.0	1.08%	55.9	0.99%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.086e+00	1.0000	71.0	1.70%	89.0	1.57%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.086e+00	1.0000	152.0	3.64%	196.3	3.46%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.079e+00	1.0000	361.0	8.64%	476.0	8.40%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.077e+00	1.0000	130.0	3.11%	167.0	2.95%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.072e+00	1.0000	64.0	1.53%	80.3	1.42%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.070e+00	1.0000	108.0	2.58%	138.4	2.44%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.053e+00	1.0000	394.0	9.43%	520.1	9.18%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.050e+00	1.0000	382.0	9.14%	505.0	8.91%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.039e+00	1.0000	3032.0	72.54%	4090.8	72.18%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.020e+00	1.0000	3.0	0.07%	2.8	0.05%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.019e+00	1.0000	154.0	3.68%	200.6	3.54%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.019e+00	1.0000	382.0	9.14%	505.3	8.92%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.013e+00	1.0000	102.0	2.44%	131.7	2.32%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.976e-01	1.0000	22.0	0.53%	26.1	0.46%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-9.877e-01	1.0000	73.0	1.75%	93.7	1.65%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-9.832e-01	1.0000	402.0	9.62%	533.7	9.42%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-9.820e-01	1.0000	11.0	0.26%	13.0	0.23%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-9.756e-01	1.0000	18.0	0.43%	21.5	0.38%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-9.750e-01	1.0000	190.0	4.55%	249.1	4.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-9.734e-01	1.0000	178.0	4.26%	233.5	4.12%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-9.707e-01	1.0000	145.0	3.47%	189.6	3.35%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.674e-01	1.0000	69.0	1.65%	88.5	1.56%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.638e-01	1.0000	75.0	1.79%	96.9	1.71%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-9.617e-01	1.0000	397.0	9.50%	527.2	9.30%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-9.595e-01	1.0000	21.0	0.50%	25.9	0.46%
SeqBias: TA-repeat	TATATATATA	1e0	-9.548e-01	1.0000	105.0	2.51%	136.7	2.41%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.537e-01	1.0000	129.0	3.09%	168.5	2.97%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-9.525e-01	1.0000	262.0	6.27%	346.4	6.11%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-9.507e-01	1.0000	59.0	1.41%	75.3	1.33%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-9.478e-01	1.0000	2.0	0.05%	1.7	0.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.478e-01	1.0000	2.0	0.05%	1.7	0.03%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.478e-01	1.0000	2.0	0.05%	2.0	0.03%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-9.478e-01	1.0000	2.0	0.05%	1.8	0.03%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-9.414e-01	1.0000	395.0	9.45%	525.7	9.28%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-9.385e-01	1.0000	86.0	2.06%	112.0	1.98%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.365e-01	1.0000	46.0	1.10%	58.9	1.04%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-9.252e-01	1.0000	286.0	6.84%	379.6	6.70%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.235e-01	1.0000	64.0	1.53%	82.4	1.45%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-9.187e-01	1.0000	82.0	1.96%	106.4	1.88%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.130e-01	1.0000	6.0	0.14%	6.9	0.12%
SeqBias: CA-repeat	CACACACACA	1e0	-9.108e-01	1.0000	1862.0	44.55%	2509.1	44.27%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.097e-01	1.0000	153.0	3.66%	201.5	3.56%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-9.018e-01	1.0000	117.0	2.80%	153.9	2.72%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-8.995e-01	1.0000	102.0	2.44%	134.0	2.36%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.899e-01	1.0000	35.0	0.84%	44.8	0.79%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-8.818e-01	1.0000	19.0	0.45%	23.1	0.41%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.800e-01	1.0000	761.0	18.21%	1021.2	18.02%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.797e-01	1.0000	224.0	5.36%	297.6	5.25%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-8.784e-01	1.0000	148.0	3.54%	195.2	3.44%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.776e-01	1.0000	74.0	1.77%	96.6	1.70%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.774e-01	1.0000	68.0	1.63%	88.2	1.56%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-8.773e-01	1.0000	9.0	0.22%	10.5	0.18%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-8.622e-01	1.0000	31.0	0.74%	39.5	0.70%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-8.620e-01	1.0000	364.0	8.71%	486.8	8.59%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.594e-01	1.0000	12.0	0.29%	14.5	0.26%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-8.578e-01	1.0000	79.0	1.89%	104.0	1.83%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-8.569e-01	1.0000	1.0	0.02%	0.9	0.02%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-8.569e-01	1.0000	1.0	0.02%	1.0	0.02%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-8.569e-01	1.0000	1.0	0.02%	0.7	0.01%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-8.560e-01	1.0000	43.0	1.03%	55.8	0.98%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.547e-01	1.0000	55.0	1.32%	71.1	1.25%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.496e-01	1.0000	111.0	2.66%	146.4	2.58%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-8.488e-01	1.0000	15.0	0.36%	18.7	0.33%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-8.482e-01	1.0000	146.0	3.49%	193.3	3.41%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-8.455e-01	1.0000	5.0	0.12%	5.7	0.10%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.444e-01	1.0000	137.0	3.28%	181.6	3.20%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.403e-01	1.0000	656.0	15.69%	881.1	15.55%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-8.363e-01	1.0000	4179.0	99.98%	5664.6	99.95%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.358e-01	1.0000	72.0	1.72%	94.5	1.67%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.339e-01	1.0000	621.0	14.86%	834.9	14.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-8.327e-01	1.0000	746.0	17.85%	1003.2	17.70%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-8.327e-01	1.0000	200.0	4.78%	266.1	4.70%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-8.303e-01	1.0000	51.0	1.22%	67.0	1.18%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-8.300e-01	1.0000	33.0	0.79%	42.8	0.76%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-8.262e-01	1.0000	409.0	9.78%	548.5	9.68%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-8.209e-01	1.0000	8.0	0.19%	10.0	0.18%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-8.209e-01	1.0000	8.0	0.19%	9.4	0.17%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-8.207e-01	1.0000	1008.0	24.11%	1358.3	23.97%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-8.135e-01	1.0000	2682.0	64.16%	3627.8	64.01%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-8.103e-01	1.0000	11.0	0.26%	13.9	0.24%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.102e-01	1.0000	155.0	3.71%	206.2	3.64%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-8.085e-01	1.0000	56.0	1.34%	73.2	1.29%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-8.047e-01	1.0000	14.0	0.33%	17.2	0.30%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-7.989e-01	1.0000	108.0	2.58%	143.8	2.54%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.900e-01	1.0000	93.0	2.22%	123.7	2.18%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-7.855e-01	1.0000	55.0	1.32%	72.5	1.28%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.817e-01	1.0000	130.0	3.11%	173.7	3.07%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.740e-01	1.0000	69.0	1.65%	91.1	1.61%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-7.737e-01	1.0000	961.0	22.99%	1297.3	22.89%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.726e-01	1.0000	138.0	3.30%	184.7	3.26%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-7.721e-01	1.0000	92.0	2.20%	122.1	2.15%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.696e-01	1.0000	4.0	0.10%	4.1	0.07%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.692e-01	1.0000	737.0	17.63%	994.3	17.55%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-7.660e-01	1.0000	25.0	0.60%	32.7	0.58%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.657e-01	1.0000	425.0	10.17%	572.1	10.09%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.656e-01	1.0000	728.0	17.42%	982.9	17.34%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-7.656e-01	1.0000	83.0	1.99%	110.8	1.96%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.610e-01	1.0000	7.0	0.17%	8.9	0.16%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.608e-01	1.0000	16.0	0.38%	20.5	0.36%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.576e-01	1.0000	48.0	1.15%	63.0	1.11%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-7.530e-01	1.0000	330.0	7.89%	444.9	7.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.524e-01	1.0000	548.0	13.11%	739.5	13.05%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-7.515e-01	1.0000	108.0	2.58%	144.3	2.55%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.499e-01	1.0000	624.0	14.93%	842.3	14.86%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.496e-01	1.0000	672.0	16.08%	907.2	16.01%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-7.496e-01	1.0000	85.0	2.03%	113.7	2.01%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-7.478e-01	1.0000	142.0	3.40%	190.4	3.36%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-7.477e-01	1.0000	179.0	4.28%	240.9	4.25%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-7.426e-01	1.0000	116.0	2.78%	155.8	2.75%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-7.396e-01	1.0000	167.0	4.00%	224.6	3.96%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.348e-01	1.0000	444.0	10.62%	599.3	10.58%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.320e-01	1.0000	121.0	2.89%	162.5	2.87%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.310e-01	1.0000	223.0	5.33%	300.2	5.30%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.296e-01	1.0000	1044.0	24.98%	1412.8	24.93%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-7.283e-01	1.0000	542.0	12.97%	732.2	12.92%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-7.250e-01	1.0000	95.0	2.27%	128.0	2.26%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.198e-01	1.0000	72.0	1.72%	96.4	1.70%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-7.194e-01	1.0000	89.0	2.13%	119.7	2.11%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-7.191e-01	1.0000	15.0	0.36%	20.0	0.35%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.191e-01	1.0000	15.0	0.36%	19.7	0.35%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.191e-01	1.0000	15.0	0.36%	19.3	0.34%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-7.166e-01	1.0000	185.0	4.43%	249.4	4.40%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.135e-01	1.0000	49.0	1.17%	65.1	1.15%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-7.110e-01	1.0000	97.0	2.32%	130.5	2.30%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.061e-01	1.0000	9.0	0.22%	11.3	0.20%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-7.061e-01	1.0000	9.0	0.22%	11.7	0.21%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-7.060e-01	1.0000	4178.0	99.95%	5663.9	99.94%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-7.048e-01	1.0000	26.0	0.62%	34.1	0.60%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.010e-01	1.0000	40.0	0.96%	53.7	0.95%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.991e-01	1.0000	23.0	0.55%	30.2	0.53%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.966e-01	1.0000	279.0	6.67%	377.9	6.67%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-6.966e-01	1.0000	6.0	0.14%	7.9	0.14%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-6.960e-01	1.0000	338.0	8.09%	457.2	8.07%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-6.920e-01	1.0000	138.0	3.30%	186.9	3.30%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-6.912e-01	1.0000	211.0	5.05%	285.4	5.04%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.906e-01	1.0000	107.0	2.56%	144.6	2.55%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.903e-01	1.0000	48.0	1.15%	64.3	1.14%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-6.903e-01	1.0000	48.0	1.15%	64.4	1.14%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-6.900e-01	1.0000	121.0	2.89%	163.6	2.89%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-6.896e-01	1.0000	3168.0	75.79%	4294.9	75.78%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-6.833e-01	1.0000	1168.0	27.94%	1583.4	27.94%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-6.830e-01	1.0000	171.0	4.09%	231.2	4.08%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.817e-01	1.0000	1252.0	29.95%	1697.0	29.94%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-6.808e-01	1.0000	940.0	22.49%	1275.0	22.50%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-6.805e-01	1.0000	3.0	0.07%	3.4	0.06%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.805e-01	1.0000	3.0	0.07%	3.9	0.07%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-6.805e-01	1.0000	3.0	0.07%	3.2	0.06%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.798e-01	1.0000	28.0	0.67%	37.4	0.66%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-6.767e-01	1.0000	4152.0	99.33%	5628.3	99.31%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-6.755e-01	1.0000	134.0	3.21%	182.0	3.21%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.731e-01	1.0000	25.0	0.60%	33.5	0.59%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.727e-01	1.0000	131.0	3.13%	177.6	3.13%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-6.702e-01	1.0000	1101.0	26.34%	1493.2	26.35%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-6.678e-01	1.0000	86.0	2.06%	116.5	2.05%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.641e-01	1.0000	83.0	1.99%	112.4	1.98%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-6.547e-01	1.0000	88.0	2.11%	119.4	2.11%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-6.480e-01	1.0000	157.0	3.76%	213.9	3.77%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-6.478e-01	1.0000	221.0	5.29%	300.6	5.30%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-6.384e-01	1.0000	43.0	1.03%	58.5	1.03%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.341e-01	1.0000	1013.0	24.23%	1376.2	24.28%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.337e-01	1.0000	203.0	4.86%	276.5	4.88%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-6.329e-01	1.0000	381.0	9.11%	518.6	9.15%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-6.294e-01	1.0000	103.0	2.46%	140.0	2.47%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-6.294e-01	1.0000	103.0	2.46%	140.7	2.48%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.277e-01	1.0000	136.0	3.25%	185.8	3.28%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-6.263e-01	1.0000	5.0	0.12%	6.4	0.11%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.263e-01	1.0000	5.0	0.12%	6.6	0.12%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.254e-01	1.0000	169.0	4.04%	230.3	4.06%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.238e-01	1.0000	56.0	1.34%	76.8	1.36%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.164e-01	1.0000	10.0	0.24%	13.1	0.23%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.150e-01	1.0000	1873.0	44.81%	2544.3	44.89%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.131e-01	1.0000	423.0	10.12%	576.7	10.18%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.111e-01	1.0000	110.0	2.63%	150.4	2.65%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.077e-01	1.0000	39.0	0.93%	53.3	0.94%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-6.035e-01	1.0000	55.0	1.32%	75.7	1.34%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.031e-01	1.0000	430.0	10.29%	586.7	10.35%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-6.026e-01	1.0000	355.0	8.49%	484.6	8.55%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-6.013e-01	1.0000	123.0	2.94%	168.2	2.97%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.999e-01	1.0000	36.0	0.86%	49.0	0.87%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.998e-01	1.0000	563.0	13.47%	767.6	13.55%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.942e-01	1.0000	1039.0	24.86%	1414.7	24.96%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.892e-01	1.0000	12.0	0.29%	16.3	0.29%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-5.847e-01	1.0000	1230.0	29.43%	1674.1	29.54%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.819e-01	1.0000	127.0	3.04%	174.7	3.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-5.784e-01	1.0000	154.0	3.68%	211.8	3.74%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.764e-01	1.0000	43.0	1.03%	59.6	1.05%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.681e-01	1.0000	205.0	4.90%	281.4	4.96%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.680e-01	1.0000	2.0	0.05%	2.3	0.04%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-5.667e-01	1.0000	153.0	3.66%	211.0	3.72%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-5.664e-01	1.0000	14.0	0.33%	19.6	0.35%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.652e-01	1.0000	265.0	6.34%	363.6	6.42%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.635e-01	1.0000	19.0	0.45%	26.7	0.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.635e-01	1.0000	19.0	0.45%	26.7	0.47%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-5.622e-01	1.0000	45.0	1.08%	62.3	1.10%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.596e-01	1.0000	37.0	0.89%	51.8	0.91%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.481e-01	1.0000	4.0	0.10%	5.7	0.10%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.467e-01	1.0000	16.0	0.38%	22.5	0.40%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-5.436e-01	1.0000	52.0	1.24%	72.0	1.27%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.378e-01	1.0000	164.0	3.92%	226.8	4.00%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.319e-01	1.0000	41.0	0.98%	57.9	1.02%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-5.312e-01	1.0000	577.0	13.80%	790.6	13.95%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-5.294e-01	1.0000	23.0	0.55%	32.8	0.58%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.290e-01	1.0000	310.0	7.42%	426.3	7.52%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-5.223e-01	1.0000	331.0	7.92%	455.9	8.04%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-5.150e-01	1.0000	566.0	13.54%	776.8	13.71%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.127e-01	1.0000	8.0	0.19%	11.0	0.19%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.127e-01	1.0000	8.0	0.19%	11.4	0.20%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.114e-01	1.0000	850.0	20.33%	1163.5	20.53%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.998e-01	1.0000	37.0	0.89%	52.9	0.93%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.998e-01	1.0000	37.0	0.89%	52.3	0.92%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.990e-01	1.0000	298.0	7.13%	411.5	7.26%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-4.978e-01	1.0000	10.0	0.24%	14.7	0.26%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-4.959e-01	1.0000	203.0	4.86%	281.8	4.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.956e-01	1.0000	65.0	1.56%	91.1	1.61%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.938e-01	1.0000	52.0	1.24%	73.7	1.30%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-4.915e-01	1.0000	157.0	3.76%	218.9	3.86%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-4.887e-01	1.0000	34.0	0.81%	48.1	0.85%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-4.886e-01	1.0000	62.0	1.48%	87.3	1.54%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.883e-01	1.0000	29.0	0.69%	41.4	0.73%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-4.833e-01	1.0000	85.0	2.03%	119.0	2.10%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.737e-01	1.0000	765.0	18.30%	1050.5	18.54%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.713e-01	1.0000	316.0	7.56%	437.4	7.72%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.708e-01	1.0000	400.0	9.57%	552.9	9.76%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.631e-01	1.0000	261.0	6.24%	362.2	6.39%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.629e-01	1.0000	28.0	0.67%	40.1	0.71%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-4.623e-01	1.0000	524.0	12.54%	722.6	12.75%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.609e-01	1.0000	68.0	1.63%	96.7	1.71%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-4.587e-01	1.0000	1533.0	36.67%	2096.5	36.99%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-4.584e-01	1.0000	3.0	0.07%	4.8	0.09%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-4.582e-01	1.0000	23.0	0.55%	33.2	0.59%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.578e-01	1.0000	7.0	0.17%	10.7	0.19%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.578e-01	1.0000	7.0	0.17%	10.2	0.18%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-4.578e-01	1.0000	7.0	0.17%	10.2	0.18%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-4.568e-01	1.0000	616.0	14.74%	848.0	14.96%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-4.452e-01	1.0000	240.0	5.74%	335.0	5.91%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.424e-01	1.0000	11.0	0.26%	16.7	0.29%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.407e-01	1.0000	4173.0	99.83%	5658.6	99.85%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.396e-01	1.0000	20.0	0.48%	29.5	0.52%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.395e-01	1.0000	87.0	2.08%	124.0	2.19%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-4.385e-01	1.0000	49.0	1.17%	70.1	1.24%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.379e-01	1.0000	487.0	11.65%	673.3	11.88%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.376e-01	1.0000	44.0	1.05%	64.0	1.13%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-4.360e-01	1.0000	97.0	2.32%	137.3	2.42%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-4.340e-01	1.0000	13.0	0.31%	19.2	0.34%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.332e-01	1.0000	386.0	9.23%	535.9	9.46%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-4.314e-01	1.0000	475.0	11.36%	657.9	11.61%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-4.300e-01	1.0000	51.0	1.22%	73.7	1.30%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.258e-01	1.0000	15.0	0.36%	23.0	0.41%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-4.206e-01	1.0000	48.0	1.15%	69.8	1.23%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.149e-01	1.0000	65.0	1.56%	93.2	1.64%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.139e-01	1.0000	55.0	1.32%	79.6	1.41%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.103e-01	1.0000	326.0	7.80%	454.8	8.03%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.029e-01	1.0000	451.0	10.79%	626.1	11.05%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-4.029e-01	1.0000	203.0	4.86%	285.8	5.04%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.022e-01	1.0000	1.0	0.02%	1.9	0.03%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.022e-01	1.0000	1.0	0.02%	1.0	0.02%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.022e-01	1.0000	1.0	0.02%	1.2	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-4.022e-01	1.0000	1.0	0.02%	1.1	0.02%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-4.022e-01	1.0000	1.0	0.02%	1.0	0.02%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.022e-01	1.0000	1.0	0.02%	1.9	0.03%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-4.019e-01	1.0000	8.0	0.19%	12.6	0.22%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.976e-01	1.0000	171.0	4.09%	241.3	4.26%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-3.882e-01	1.0000	51.0	1.22%	74.6	1.32%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.882e-01	1.0000	51.0	1.22%	74.4	1.31%
SeqBias: CG bias	SSSSSSSSSS	1e0	-3.871e-01	1.0000	4171.0	99.78%	5657.0	99.82%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.859e-01	1.0000	16.0	0.38%	24.6	0.43%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-3.859e-01	1.0000	16.0	0.38%	24.7	0.44%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-3.787e-01	1.0000	115.0	2.75%	164.6	2.90%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-3.760e-01	1.0000	1001.0	23.95%	1380.9	24.37%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-3.748e-01	1.0000	20.0	0.48%	30.3	0.53%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.683e-01	1.0000	243.0	5.81%	342.4	6.04%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.655e-01	1.0000	372.0	8.90%	520.9	9.19%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.586e-01	1.0000	854.0	20.43%	1181.9	20.85%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-3.577e-01	1.0000	151.0	3.61%	215.0	3.79%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-3.473e-01	1.0000	382.0	9.14%	535.3	9.45%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.410e-01	1.0000	934.0	22.34%	1292.5	22.81%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.363e-01	1.0000	74.0	1.77%	108.2	1.91%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-3.328e-01	1.0000	113.0	2.70%	163.9	2.89%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-3.307e-01	1.0000	158.0	3.78%	226.0	3.99%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-3.219e-01	1.0000	16.0	0.38%	25.9	0.46%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.193e-01	1.0000	10.0	0.24%	16.2	0.29%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-3.183e-01	1.0000	87.0	2.08%	127.1	2.24%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.126e-01	1.0000	24.0	0.57%	37.2	0.66%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.902e-01	1.0000	800.0	19.14%	1114.2	19.66%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.793e-01	1.0000	353.0	8.44%	501.0	8.84%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-2.699e-01	1.0000	195.0	4.67%	281.1	4.96%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.676e-01	1.0000	1264.0	30.24%	1751.3	30.90%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.661e-01	1.0000	3430.0	82.06%	4681.8	82.61%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.653e-01	1.0000	52.0	1.24%	80.0	1.41%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.647e-01	1.0000	14.0	0.33%	23.0	0.41%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-2.545e-01	1.0000	38.0	0.91%	59.2	1.04%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.456e-01	1.0000	159.0	3.80%	233.0	4.11%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.333e-01	1.0000	259.0	6.20%	373.5	6.59%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.235e-01	1.0000	38.0	0.91%	60.6	1.07%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-2.159e-01	1.0000	1312.0	31.39%	1824.9	32.20%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-2.146e-01	1.0000	61.0	1.46%	94.9	1.68%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.133e-01	1.0000	351.0	8.40%	503.4	8.88%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.114e-01	1.0000	1.0	0.02%	2.3	0.04%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-2.114e-01	1.0000	1.0	0.02%	2.2	0.04%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.110e-01	1.0000	25.0	0.60%	41.9	0.74%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.926e-01	1.0000	189.0	4.52%	278.2	4.91%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.870e-01	1.0000	367.0	8.78%	528.9	9.33%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.862e-01	1.0000	8.0	0.19%	15.5	0.27%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.560e-01	1.0000	482.0	11.53%	693.0	12.23%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.534e-01	1.0000	357.0	8.54%	518.6	9.15%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.511e-01	1.0000	82.0	1.96%	128.3	2.26%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.452e-01	1.0000	750.0	17.94%	1065.2	18.80%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-1.447e-01	1.0000	64.0	1.53%	102.6	1.81%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.411e-01	1.0000	507.0	12.13%	729.4	12.87%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.379e-01	1.0000	2.0	0.05%	5.0	0.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.315e-01	1.0000	9.0	0.22%	19.0	0.33%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.313e-01	1.0000	50.0	1.20%	82.5	1.46%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.137e-01	1.0000	287.0	6.87%	425.6	7.51%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.067e-01	1.0000	232.0	5.55%	348.3	6.15%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.034e-01	1.0000	356.0	8.52%	524.7	9.26%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.013e-01	1.0000	292.0	6.99%	434.4	7.66%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-8.805e-02	1.0000	467.0	11.17%	683.7	12.06%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-8.629e-02	1.0000	815.0	19.50%	1168.7	20.62%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-8.616e-02	1.0000	324.0	7.75%	482.1	8.51%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-8.216e-02	1.0000	251.0	6.00%	379.4	6.70%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-7.773e-02	1.0000	289.0	6.91%	434.8	7.67%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-7.190e-02	1.0000	372.0	8.90%	553.4	9.77%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-7.172e-02	1.0000	279.0	6.67%	421.8	7.44%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.977e-02	1.0000	271.0	6.48%	410.8	7.25%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.663e-02	1.0000	314.0	7.51%	472.4	8.34%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.243e-02	1.0000	429.0	10.26%	636.3	11.23%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-5.981e-02	1.0000	620.0	14.83%	905.7	15.98%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-4.962e-02	1.0000	177.0	4.23%	279.1	4.92%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.761e-02	1.0000	77.0	1.84%	131.8	2.33%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-4.734e-02	1.0000	165.0	3.95%	262.2	4.63%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.295e-02	1.0000	182.0	4.35%	288.5	5.09%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-4.094e-02	1.0000	691.0	16.53%	1012.6	17.87%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.073e-02	1.0000	601.0	14.38%	887.0	15.65%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.714e-02	1.0000	253.0	6.05%	393.4	6.94%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.163e-02	1.0000	609.0	14.57%	902.9	15.93%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-2.893e-02	1.0000	855.0	20.45%	1248.7	22.03%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.812e-02	1.0000	147.0	3.52%	241.5	4.26%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.579e-02	1.0000	81.0	1.94%	142.4	2.51%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.943e-02	1.0000	101.0	2.42%	175.5	3.10%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.834e-02	1.0000	376.0	9.00%	580.2	10.24%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.621e-02	1.0000	680.0	16.27%	1014.1	17.89%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-0.000e+00	1.0000	23.0	0.55%	144.8	2.55%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	0.000e+00	1.0000	4180.0	100.00%	5667.3	100.00%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	4180.0	100.00%	5667.3	100.00%